J 2021

Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA et. al.

Basic information

Original name

Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

Authors

STŘELÁK, David (203 Czech Republic, guarantor, belonging to the institution), Amaya JIMÉNEZ-MORENO (724 Spain), José VILAS (724 Spain), Erney RAMÍREZ-APORTELA (724 Spain), Ruben SÁNCHEZ-GARCÍA (724 Spain), David MALUENDA (724 Spain), Javier VARGAS (724 Spain), David HERREROS (724 Spain), Estrella FERNÁNDEZ-GIMÉNEZ (724 Spain), Federico DE ISIDRO-GÓMEZ (724 Spain), Jan HORÁČEK (203 Czech Republic, belonging to the institution), David MYŠKA (203 Czech Republic, belonging to the institution), Martin HORÁČEK (203 Czech Republic, belonging to the institution), Pablo CONESA (724 Spain), Yunior FONSECA-REYNA (724 Spain), Jorge JIMÉNEZ, Marta MARTÍNEZ (724 Spain), Mohamad HARASTANI (250 France), Slavica JONIĆ (250 France), Jiří FILIPOVIČ (203 Czech Republic, belonging to the institution), Roberto MARABINI (724 Spain), José CARAZO (724 Spain) and Carlos SORZANO (724 Spain)

Edition

Molecules, Mayer und Muller, 2021, 1420-3049

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10201 Computer sciences, information science, bioinformatics

Country of publisher

Switzerland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 4.927

RIV identification code

RIV/00216224:14330/21:00122593

Organization unit

Faculty of Informatics

DOI

http://dx.doi.org/10.3390/molecules26206224

UT WoS

000714566400001

Keywords in English

Xmipp; Cryo-EM; Scipion; single-particle analysis

Tags

J-Q2

Tags

International impact, Reviewed
Změněno: 24/1/2022 18:04, RNDr. David Střelák, Ph.D.

Abstract

V originále

Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.

Links

EF16_013/0001802, research and development project
Name: CERIT Scientific Cloud
MUNI/A/1411/2019, interní kód MU
Name: Aplikovaný výzkum: softwarové architektury kritických infrastruktur, bezpečnost počítačových systémů, zpracování přirozeného jazyka a jazykové inženýrství, vizualizaci velkých dat a rozšířená realita.
Investor: Masaryk University, Category A
MUNI/A/1549/2020, interní kód MU
Name: Zapojení studentů Fakulty informatiky do mezinárodní vědecké komunity 21 (Acronym: SKOMU)
Investor: Masaryk University
Displayed: 9/11/2024 00:15