OralDisk: A Chair-Side Compatible Molecular Platform Using
Whole Saliva for Monitoring Oral Health at the Dental Practice

J 2021

OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice

BAUMGARTNER, D., B. JOHANNSEN, M. SPECHT, J. LUEDDECKE, M. ROMBACH et. al.

Basic information

Original name

OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice

Authors

BAUMGARTNER, D. (guarantor), B. JOHANNSEN, M. SPECHT, J. LUEDDECKE, M. ROMBACH, S. HIN, N. PAUST, F. VON STETTEN, R. ZENGERLE, Ch. HERZ, J.R. PEHAM, P.N. PAQUE, T. ATTIN, J.S. JENZER, P. KOERNER, P.R. SCHMIDLIN, T. THURNHEER, F.J. WEGEHAUPT, W.E. KAMAN, A. STUBBS, J.P. HAYS, V. RUSU, A. MICHIE, T. BINSL, D. STEJSKAL, Michal KARPÍŠEK (203 Czech Republic, belonging to the institution), K. BAO, N. BOSTANCI, G.N. BELIBASAKIS and K. MITSAKAKIS

Edition

BIOSENSORS-BASEL, Basel, MDPI, 2021, 2079-6374

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

30104 Pharmacology and pharmacy

Country of publisher

Switzerland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 5.743

RIV identification code

RIV/00216224:14160/21:00124580

Organization unit

Faculty of Pharmacy

DOI

http://dx.doi.org/10.3390/bios11110423

UT WoS

000784464100001

Keywords in English

dental practice; point-of-care diagnostics; treatment monitoring; oral health; periodontitis; caries; saliva diagnostics

Abstract

V originále

first_page settings Open AccessArticle OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice by Desirée Baumgartner 1,2,*, Benita Johannsen 1, Mara Specht 1, Jan Lüddecke 1, Markus Rombach 1, Sebastian Hin 1, Nils Paust 1,2, Felix von Stetten 1,2 [ORCID] , Roland Zengerle 1,2, Christopher Herz 3, Johannes R. Peham 3 [ORCID] , Pune N. Paqué 4 [ORCID] , Thomas Attin 4, Joël S. Jenzer 4 [ORCID] , Philipp Körner 4, Patrick R. Schmidlin 4 [ORCID] , Thomas Thurnheer 4 [ORCID] , Florian J. Wegehaupt 4 [ORCID] , Wendy E. Kaman 5,6, Andrew Stubbs 7 [ORCID] , add Show full author list 1 Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany 2 Laboratory for MEMS Applications, IMTEK–Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany 3 AIT Austrian Institute of Technology, Molecular Diagnostics, Giefinggasse 4, 1210 Wien, Austria 4 Clinic of Conservative and Preventive Dentistry, Center of Dental Medicine, University of Zurich, Plattenstrasse 11, 8032 Zurich, Switzerland 5 Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre Rotterdam (Erasmus MC), 3015 CN Rotterdam, The Netherlands 6 Department of Oral Biochemistry, Academic Centre for Dentistry Amsterdam (ACTA), Free University of Amsterdam and University of Amsterdam, 1081 LA Amsterdam, The Netherlands 7 Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre Rotterdam (Erasmus MC), 3015 CN Rotterdam, The Netherlands 8 Magtivio B.V., Daelderweg 9, 6361 HK Nuth, The Netherlands 9 ClinicaGeno Ltd., 11 Station Approach, Coulsdon CR5 2NR, UK 10 Department of Biomedical Sciences, Faculty of Medicine, University of Ostrava, Syllabova 19, 70300 Ostrava, Czech Republic add Show full affiliation list * Authors to whom correspondence should be addressed. Biosensors 2021, 11(11), 423; https://doi.org/10.3390/bios11110423 Received: 1 October 2021 / Revised: 22 October 2021 / Accepted: 24 October 2021 / Published: 28 October 2021 (This article belongs to the Special Issue Microfluidics for Biosensing) Download PDF Browse Figures Citation Export Abstract Periodontitis and dental caries are two major bacterially induced, non-communicable diseases that cause the deterioration of oral health, with implications in patients’ general health. Early, precise diagnosis and personalized monitoring are essential for the efficient prevention and management of these diseases. Here, we present a disk-shaped microfluidic platform (OralDisk) compatible with chair-side use that enables analysis of non-invasively collected whole saliva samples and molecular-based detection of ten bacteria: seven periodontitis-associated (Aggregatibacter actinomycetemcomitans, Campylobacter rectus, Fusobacterium nucleatum, Prevotella intermedia, Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola) and three caries-associated (oral Lactobacilli, Streptococcus mutans, Streptococcus sobrinus). Each OralDisk test required 400 µL of homogenized whole saliva. The automated workflow included bacterial DNA extraction, purification and hydrolysis probe real-time PCR detection of the target pathogens. All reagents were pre-stored within the disk and sample-to-answer processing took < 3 h using a compact, customized processing device. A technical feasibility study (25 OralDisks) was conducted using samples from healthy, periodontitis and caries patients. The comparison of the OralDisk with a lab-based reference method revealed a ~90% agreement amongst targets detected as positive and negative. This shows the OralDisk’s potential and suitability for inclusion in larger prospective implementation studies in dental care settings.

Citovat

BAUMGARTNER, D., B. JOHANNSEN, M. SPECHT, J. LUEDDECKE, M. ROMBACH, S. HIN, N. PAUST, F. VON STETTEN, R. ZENGERLE, Ch. HERZ, J.R. PEHAM, P.N. PAQUE, T. ATTIN, J.S. JENZER, P. KOERNER, P.R. SCHMIDLIN, T. THURNHEER, F.J. WEGEHAUPT, W.E. KAMAN, A. STUBBS, J.P. HAYS, V. RUSU, A. MICHIE, T. BINSL, D. STEJSKAL, Michal KARPÍŠEK, K. BAO, N. BOSTANCI, G.N. BELIBASAKIS and K. MITSAKAKIS. OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice. BIOSENSORS-BASEL. Basel: MDPI, 2021, vol. 11, No 11, p. 1-21. ISSN 2079-6374. Available from: https://dx.doi.org/10.3390/bios11110423.

@article{1852668,
   author = {Baumgartner, D. and Johannsen, B. and Specht, M. and Lueddecke, J. and Rombach, M. and Hin, S. and Paust, N. and von Stetten, F. and Zengerle, R. and Herz, Ch. and Peham, J.R. and Paque, P.N. and Attin, T. and Jenzer, J.S. and Koerner, P. and Schmidlin, P.R. and Thurnheer, T. and Wegehaupt, F.J. and Kaman, W.E. and Stubbs, A. and Hays, J.P. and Rusu, V. and Michie, A. and Binsl, T. and Stejskal, D. and Karpíšek, Michal and Bao, K. and Bostanci, N. and Belibasakis, G.N. and Mitsakakis, K.},
   article_location = {Basel},
   article_number = {11},
   doi = {http://dx.doi.org/10.3390/bios11110423},
   keywords = {dental practice; point-of-care diagnostics; treatment monitoring; oral health; periodontitis; caries; saliva diagnostics},
   language = {eng},
   issn = {2079-6374},
   journal = {BIOSENSORS-BASEL},
   title = {OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice},
   url = {https://www.mdpi.com/2079-6374/11/11/423},
   volume = {11},
   year = {2021}
}

TY  - JOUR
ID  - 1852668
AU  - Baumgartner, D. - Johannsen, B. - Specht, M. - Lueddecke, J. - Rombach, M. - Hin, S. - Paust, N. - von Stetten, F. - Zengerle, R. - Herz, Ch. - Peham, J.R. - Paque, P.N. - Attin, T. - Jenzer, J.S. - Koerner, P. - Schmidlin, P.R. - Thurnheer, T. - Wegehaupt, F.J. - Kaman, W.E. - Stubbs, A. - Hays, J.P. - Rusu, V. - Michie, A. - Binsl, T. - Stejskal, D. - Karpíšek, Michal - Bao, K. - Bostanci, N. - Belibasakis, G.N. - Mitsakakis, K.
PY  - 2021
TI  - OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice
JF  - BIOSENSORS-BASEL
VL  - 11
IS  - 11
SP  - 1-21
EP  - 1-21
PB  - MDPI
SN  - 20796374
KW  - dental practice
KW  - point-of-care diagnostics
KW  - treatment monitoring
KW  - oral health
KW  - periodontitis
KW  - caries
KW  - saliva diagnostics
UR  - https://www.mdpi.com/2079-6374/11/11/423
N2  - first_page settings Open AccessArticle OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice by Desirée Baumgartner 1,2,*, Benita Johannsen 1, Mara Specht 1, Jan Lüddecke 1, Markus Rombach 1, Sebastian Hin 1, Nils Paust 1,2, Felix von Stetten 1,2 [ORCID] , Roland Zengerle 1,2, Christopher Herz 3, Johannes R. Peham 3 [ORCID] , Pune N. Paqué 4 [ORCID] , Thomas Attin 4, Joël S. Jenzer 4 [ORCID] , Philipp Körner 4, Patrick R. Schmidlin 4 [ORCID] , Thomas Thurnheer 4 [ORCID] , Florian J. Wegehaupt 4 [ORCID] , Wendy E. Kaman 5,6, Andrew Stubbs 7 [ORCID] , add Show full author list 1 Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany 2 Laboratory for MEMS Applications, IMTEK–Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany 3 AIT Austrian Institute of Technology, Molecular Diagnostics, Giefinggasse 4, 1210 Wien, Austria 4 Clinic of Conservative and Preventive Dentistry, Center of Dental Medicine, University of Zurich, Plattenstrasse 11, 8032 Zurich, Switzerland 5 Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre Rotterdam (Erasmus MC), 3015 CN Rotterdam, The Netherlands 6 Department of Oral Biochemistry, Academic Centre for Dentistry Amsterdam (ACTA), Free University of Amsterdam and University of Amsterdam, 1081 LA Amsterdam, The Netherlands 7 Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre Rotterdam (Erasmus MC), 3015 CN Rotterdam, The Netherlands 8 Magtivio B.V., Daelderweg 9, 6361 HK Nuth, The Netherlands 9 ClinicaGeno Ltd., 11 Station Approach, Coulsdon CR5 2NR, UK 10 Department of Biomedical Sciences, Faculty of Medicine, University of Ostrava, Syllabova 19, 70300 Ostrava, Czech Republic add Show full affiliation list * Authors to whom correspondence should be addressed. Biosensors 2021, 11(11), 423; https://doi.org/10.3390/bios11110423 Received: 1 October 2021 / Revised: 22 October 2021 / Accepted: 24 October 2021 / Published: 28 October 2021 (This article belongs to the Special Issue Microfluidics for Biosensing) Download PDF Browse Figures Citation Export Abstract Periodontitis and dental caries are two major bacterially induced, non-communicable diseases that cause the deterioration of oral health, with implications in patients’ general health. Early, precise diagnosis and personalized monitoring are essential for the efficient prevention and management of these diseases. Here, we present a disk-shaped microfluidic platform (OralDisk) compatible with chair-side use that enables analysis of non-invasively collected whole saliva samples and molecular-based detection of ten bacteria: seven periodontitis-associated (Aggregatibacter actinomycetemcomitans, Campylobacter rectus, Fusobacterium nucleatum, Prevotella intermedia, Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola) and three caries-associated (oral Lactobacilli, Streptococcus mutans, Streptococcus sobrinus). Each OralDisk test required 400 µL of homogenized whole saliva. The automated workflow included bacterial DNA extraction, purification and hydrolysis probe real-time PCR detection of the target pathogens. All reagents were pre-stored within the disk and sample-to-answer processing took < 3 h using a compact, customized processing device. A technical feasibility study (25 OralDisks) was conducted using samples from healthy, periodontitis and caries patients. The comparison of the OralDisk with a lab-based reference method revealed a ~90% agreement amongst targets detected as positive and negative. This shows the OralDisk’s potential and suitability for inclusion in larger prospective implementation studies in dental care settings.
ER  -

BAUMGARTNER, D., B. JOHANNSEN, M. SPECHT, J. LUEDDECKE, M. ROMBACH, S. HIN, N. PAUST, F. VON STETTEN, R. ZENGERLE, Ch. HERZ, J.R. PEHAM, P.N. PAQUE, T. ATTIN, J.S. JENZER, P. KOERNER, P.R. SCHMIDLIN, T. THURNHEER, F.J. WEGEHAUPT, W.E. KAMAN, A. STUBBS, J.P. HAYS, V. RUSU, A. MICHIE, T. BINSL, D. STEJSKAL, Michal KARPÍŠEK, K. BAO, N. BOSTANCI, G.N. BELIBASAKIS and K. MITSAKAKIS. OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice. \textit{BIOSENSORS-BASEL}. Basel: MDPI, 2021, vol.~11, No~11, p.~1-21. ISSN~2079-6374. Available from: https://dx.doi.org/10.3390/bios11110423.

Detailed Information on Publication Record