Detailed Information on Publication Record
2022
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems
TROJÁK, Matej, David ŠAFRÁNEK, Branislav BROZMANN and Luboš BRIMBasic information
Original name
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems
Authors
TROJÁK, Matej (703 Slovakia, belonging to the institution), David ŠAFRÁNEK (203 Czech Republic, guarantor, belonging to the institution), Branislav BROZMANN (703 Slovakia, belonging to the institution) and Luboš BRIM (203 Czech Republic, belonging to the institution)
Edition
LNBI 13447. Neuveden, 20th International Conference on Computational Methods in Systems Biology, p. 302-309, 8 pp. 2022
Publisher
Springer
Other information
Language
English
Type of outcome
Stať ve sborníku
Field of Study
10201 Computer sciences, information science, bioinformatics
Country of publisher
Netherlands
Confidentiality degree
není předmětem státního či obchodního tajemství
Publication form
electronic version available online
References:
Impact factor
Impact factor: 0.402 in 2005
RIV identification code
RIV/00216224:14330/22:00129141
Organization unit
Faculty of Informatics
ISBN
978-3-031-15033-3
ISSN
Keywords in English
rule-based modelling; regulations; SBML; Galaxy tool
Tags
Tags
International impact, Reviewed
Změněno: 6/1/2023 09:59, prof. RNDr. Luboš Brim, CSc.
Abstract
V originále
eBCSgen is a software tool for developing and analysing models written in Biochemical Space Language (BCSL). BCSL is a rule-based language designed for the description of biological systems with rewriting rules in the form of behavioural patterns. This tool paper describes a new version of the tool, implementing the support for regulations, a mechanism suitable for reducing the branching behaviour of concurrent systems. Additionally, the presented version provides export to SBML, and support for CTL model checking. The paper artefact is available via https://doi.org/10.5281/zenodo.6644973.
Links
GA22-10845S, research and development project |
| ||
MUNI/A/1145/2021, interní kód MU |
|