Virtual Laser Scanning Approach to Assessing Impact of
Geometric Inaccuracy on 3D Plant Traits

J 2022

Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits

HENKE, Michael and Evgeny GLADILIN

Basic information

Original name

Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits

Authors

HENKE, Michael (276 Germany, guarantor, belonging to the institution) and Evgeny GLADILIN

Edition

REMOTE SENSING, MDPI, 2022, 2072-4292

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

Canada

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

odkaz na webovou stránku

Impact factor

Impact factor: 5.000

RIV identification code

RIV/00216224:14740/22:00127314

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.3390/rs14194727

UT WoS

000868040300001

Keywords in English

3D plant phenotyping; virtual laser scanning; computational plant modeling; light interception; shoot architecture; trait sensitivity; GroIMP

Abstract

V originále

In recent years, 3D imaging became an increasingly popular screening modality for high-throughput plant phenotyping. The 3D scans provide a rich source of information about architectural plant organization which cannot always be derived from multi-view projection 2D images. On the other hand, 3D scanning is associated with a principle inaccuracy by assessment of geometrically complex plant structures, for example, due the loss of geometrical information on reflective, shadowed, inclined and/or curved leaf surfaces. Here, we aim to quantitatively assess the impact of geometrical inaccuracies in 3D plant data on phenotypic descriptors of four different shoot architectures, including tomato, maize, cucumber, and arabidopsis. For this purpose, virtual laser scanning of synthetic models of these four plant species was used. This approach was applied to simulate different scenarios of 3D model perturbation, as well as the principle loss of geometrical information in shadowed plant regions. Our experimental results show that different plant traits exhibit different and, in general, plant type specific dependency on the level of geometrical perturbations. However, some phenotypic traits are tendentially more or less correlated with the degree of geometrical inaccuracies in assessing 3D plant architecture. In particular, integrative traits, such as plant area, volume, and physiologically important light absorption show stronger correlation with the effectively visible plant area than linear shoot traits, such as total plant height and width crossover different scenarios of geometrical perturbation. Our study addresses an important question of reliability and accuracy of 3D plant measurements and provides solution suggestions for consistent quantitative analysis and interpretation of imperfect data by combining measurement results with computational simulation of synthetic plant models.

Links

EF16_026/0008446, research and development project

Name: Integrace signálu a epigenetické reprogramování pro produktivitu rostlin

Citovat

HENKE, Michael and Evgeny GLADILIN. Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits. REMOTE SENSING. MDPI, 2022, vol. 14, No 19, p. 1-19. ISSN 2072-4292. Available from: https://dx.doi.org/10.3390/rs14194727.

@article{2235887,
   author = {Henke, Michael and Gladilin, Evgeny},
   article_number = {19},
   doi = {http://dx.doi.org/10.3390/rs14194727},
   keywords = {3D plant phenotyping; virtual laser scanning; computational plant modeling; light interception; shoot architecture; trait sensitivity; GroIMP},
   language = {eng},
   issn = {2072-4292},
   journal = {REMOTE SENSING},
   title = {Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits},
   url = {https://www.mdpi.com/2072-4292/14/19/4727},
   volume = {14},
   year = {2022}
}

TY  - JOUR
ID  - 2235887
AU  - Henke, Michael - Gladilin, Evgeny
PY  - 2022
TI  - Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits
JF  - REMOTE SENSING
VL  - 14
IS  - 19
SP  - 1-19
EP  - 1-19
PB  - MDPI
SN  - 20724292
KW  - 3D plant phenotyping
KW  - virtual laser scanning
KW  - computational plant modeling
KW  - light interception
KW  - shoot architecture
KW  - trait sensitivity
KW  - GroIMP
UR  - https://www.mdpi.com/2072-4292/14/19/4727
N2  - In recent years, 3D imaging became an increasingly popular screening modality for high-throughput plant phenotyping. The 3D scans provide a rich source of information about architectural plant organization which cannot always be derived from multi-view projection 2D images. On the other hand, 3D scanning is associated with a principle inaccuracy by assessment of geometrically complex plant structures, for example, due the loss of geometrical information on reflective, shadowed, inclined and/or curved leaf surfaces. Here, we aim to quantitatively assess the impact of geometrical inaccuracies in 3D plant data on phenotypic descriptors of four different shoot architectures, including tomato, maize, cucumber, and arabidopsis. For this purpose, virtual laser scanning of synthetic models of these four plant species was used. This approach was applied to simulate different scenarios of 3D model perturbation, as well as the principle loss of geometrical information in shadowed plant regions. Our experimental results show that different plant traits exhibit different and, in general, plant type specific dependency on the level of geometrical perturbations. However, some phenotypic traits are tendentially more or less correlated with the degree of geometrical inaccuracies in assessing 3D plant architecture. In particular, integrative traits, such as plant area, volume, and physiologically important light absorption show stronger correlation with the effectively visible plant area than linear shoot traits, such as total plant height and width crossover different scenarios of geometrical perturbation. Our study addresses an important question of reliability and accuracy of 3D plant measurements and provides solution suggestions for consistent quantitative analysis and interpretation of imperfect data by combining measurement results with computational simulation of synthetic plant models.
ER  -

HENKE, Michael and Evgeny GLADILIN. Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits. \textit{REMOTE SENSING}. MDPI, 2022, vol.~14, No~19, p.~1-19. ISSN~2072-4292. Available from: https://dx.doi.org/10.3390/rs14194727.

Detailed Information on Publication Record