KHORRAMAKI, Maliheh, Mohammad ABAD, Vahidreza DARUGAR, Mehrdad POURAYOUBI, Mohammad VAKILI, Marek NEČAS, Duane CHOQUESILLO-LAZARTE, Pavel V. ANDREEV and Ekaterina S. SHCHEGRAVINA. Competitor hydrogen-bond acceptors in the SP(NH)3-based structures: Comparison of structural features – Computational/database and experimental. Polyhedron. Elsevier, 2022, vol. 228, December, p. 1-15. ISSN 0277-5387. Available from: https://dx.doi.org/10.1016/j.poly.2022.116157.
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Basic information
Original name Competitor hydrogen-bond acceptors in the SP(NH)3-based structures: Comparison of structural features – Computational/database and experimental
Authors KHORRAMAKI, Maliheh, Mohammad ABAD, Vahidreza DARUGAR, Mehrdad POURAYOUBI (guarantor), Mohammad VAKILI, Marek NEČAS (203 Czech Republic, belonging to the institution), Duane CHOQUESILLO-LAZARTE, Pavel V. ANDREEV and Ekaterina S. SHCHEGRAVINA.
Edition Polyhedron, Elsevier, 2022, 0277-5387.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10400 1.4 Chemical sciences
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
WWW URL
Impact factor Impact factor: 2.600
RIV identification code RIV/00216224:14310/22:00128142
Organization unit Faculty of Science
Doi http://dx.doi.org/10.1016/j.poly.2022.116157
UT WoS 000877346700002
Keywords in English Phosphorothioic triamide; Mercury(II) complex; Hirshfeld surface analysis; DFT; NBO
Tags CF SAXS, rivok
Tags International impact, Reviewed
Changed by Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 19/1/2023 17:24.
Abstract
The phosphorothioic triamides (4-Cl-C6H4CH2NH)3P(S) (I) and (4-CH3-C6H4CH2NH)3P(S) (II) were synthesized to study their coordination behaviors towards Hg(II) cation. The resulting complexes, [(4-Cl-C6H4CH2NH)3P(S)]2Hg2Cl4 (III) and [(4-CH3-C6H4CH2NH)3P(S)]2Hg2Cl4 (IV), are the first examples of mercury complexes with SP(NHR)3 ligands characterized by X-ray crystallography. The presence of NH/CH units and some potential competitor acceptors with moderate/weak acceptor capabilities (sulfur, chlorine and π system) provides the opportunity to study the hydrogen bond elements of (I), (III) and (IV), structurally and of all four compounds theoretically. The strengths of inter- and intramolecular hydrogen bonds were assessed by quantum chemical calculations (Atoms In Molecules (AIM), and Natural Bond Orbital (NBO)), and the internal interactions were further examined by reduced density gradient (RDG) analysis. The differences/similarities of structures were addressed in the view point of geometry, conformations related to flexible substituted benzyl moieties, crowding in the structures and non-bonded contacts, stabilization of four-membered Hg2Cl2 rings and some topics related to solution nuclear magnetic resonance studies (chemical shifts and coupling constants). The similarity of structures investigated allowed for a precise assignment of vibrational frequencies. A survey of the Hg—Sdouble bondP segment in the Cambridge Structural Database shows that the Hg—S bond lengths in (III) and (IV) are among the smallest Hg—S bonds in the structures with the thiophosphoryl-holding ligands.
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LM2018127, research and development projectName: Česká infrastruktura pro integrativní strukturní biologii (Acronym: CIISB)
Investor: Ministry of Education, Youth and Sports of the CR
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