BILANOVIČOVÁ, Veronika, Nikola RÝDZA, Lilla KOCZKA, Martin HESS, Elena FERARU, Jiri FRIML and Tomasz NODZYNSKI. The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux Carrier Harbors Hallmarks of an Intrinsically Disordered Protein. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2022, vol. 23, No 11, p. 6352-6369. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms23116352.
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Basic information
Original name The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux Carrier Harbors Hallmarks of an Intrinsically Disordered Protein
Authors BILANOVIČOVÁ, Veronika (703 Slovakia, belonging to the institution), Nikola RÝDZA (703 Slovakia, belonging to the institution), Lilla KOCZKA (348 Hungary, belonging to the institution), Martin HESS (203 Czech Republic, belonging to the institution), Elena FERARU, Jiri FRIML and Tomasz NODZYNSKI (616 Poland, guarantor, belonging to the institution).
Edition International Journal of Molecular Sciences, Basel, Multidisciplinary Digital Publishing Institute, 2022, 1422-0067.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10608 Biochemistry and molecular biology
Country of publisher Switzerland
Confidentiality degree is not subject to a state or trade secret
WWW URL
Impact factor Impact factor: 5.600
RIV identification code RIV/00216224:14740/22:00128182
Organization unit Central European Institute of Technology
Doi http://dx.doi.org/10.3390/ijms23116352
UT WoS 000808733300001
Keywords in English PIN1; hydrophilic hoop; dimerization; intrinsic disorder; subcellular trafficking
Tags CF BIC, CF CELLIM, CF PLANT, rivok
Tags International impact, Reviewed
Changed by Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 3/4/2023 10:33.
Abstract
Much of plant development depends on cell-to-cell redistribution of the plant hormone auxin, which is facilitated by the plasma membrane (PM) localized PIN FORMED (PIN) proteins. Auxin export activity, developmental roles, subcellular trafficking, and polarity of PINs have been well studied, but their structure remains elusive besides a rough outline that they contain two groups of 5 alpha-helices connected by a large hydrophilic loop (HL). Here, we focus on the PIN1 HL as we could produce it in sufficient quantities for biochemical investigations to provide insights into its secondary structure. Circular dichroism (CD) studies revealed its nature as an intrinsically disordered protein (IDP), manifested by the increase of structure content upon thermal melting. Consistent with IDPs serving as interaction platforms, PIN1 loops homodimerize. PIN1 HL cytoplasmic overexpression in Arabidopsis disrupts early endocytic trafficking of PIN1 and PIN2 and causes defects in the cotyledon vasculature formation. In summary, we demonstrate that PIN1 HL has an intrinsically disordered nature, which must be considered to gain further structural insights. Some secondary structures may form transiently during pairing with known and yet-to-be-discovered interactors.
Links
EF18_046/0015974, research and development projectName: Modernizace České infrastruktury pro integrativní strukturní biologii
LM2018127, research and development projectName: Česká infrastruktura pro integrativní strukturní biologii (Acronym: CIISB)
Investor: Ministry of Education, Youth and Sports of the CR
LM2018129, research and development projectName: Národní infrastruktura pro biologické a medicínské zobrazování Czech-BioImaging
Investor: Ministry of Education, Youth and Sports of the CR
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