j 2023

An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems.

LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD et. al.

Basic information

Original name

An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems.

Authors

LAMOTHE, Lucie (guarantor), Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ (203 Czech Republic, belonging to the institution), Tomáš RAČEK (203 Czech Republic, belonging to the institution), Adrián ROŠINEC (703 Slovakia, belonging to the institution), Matej ANTOL (703 Slovakia, belonging to the institution) and Hervé MÉNAGER

Edition

BioHackrXiv, 2023

Other information

Language

English

Type of outcome

Článek v odborném periodiku (nerecenzovaný)

Field of Study

10201 Computer sciences, information science, bioinformatics

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

RIV identification code

RIV/00216224:14740/23:00131062

Organization unit

Central European Institute of Technology

Keywords in English

metadata; Tools Ecosystem; Galaxy workflows

Tags

International impact
Změněno: 30/3/2024 10:31, Mgr. Eva Dubská

Abstract

V originále

Here we report the results of a project started at the BioHackathon Europe 2022. Its goals were to cross-compare and analyze the metadata centralized in the Tools Ecosystem, and linked to the EDAM ontology, as well as to explore methods for connecting tools used in registered Galaxy workflows (i.e. WorkflowHub entries) to the annotations available in bio.tools.

Links

LM2023055, research and development project
Name: Česká národní infrastruktura pro biologická data
Investor: Ministry of Education, Youth and Sports of the CR, ELIXIR-CZ: Czech National Infrastructure for Biological Data