Detailed Information on Publication Record
2023
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
FARHAT, Perla, Terezie MALÍK MANDÁKOVÁ, Jan DIVÍŠEK, Hiroshi KUDOH, Dmitry A. GERMAN et. al.Basic information
Original name
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
Authors
FARHAT, Perla (422 Lebanon, belonging to the institution), Terezie MALÍK MANDÁKOVÁ (203 Czech Republic, belonging to the institution), Jan DIVÍŠEK (203 Czech Republic, belonging to the institution), Hiroshi KUDOH, Dmitry A. GERMAN and Martin LYSÁK (203 Czech Republic, guarantor, belonging to the institution)
Edition
Frontiers in Plant Science, Lausanne (Switzerland), Frontiers Media SA, 2023, 1664-462X
Other information
Language
English
Type of outcome
Článek v odborném periodiku
Field of Study
10611 Plant sciences, botany
Country of publisher
Switzerland
Confidentiality degree
není předmětem státního či obchodního tajemství
References:
Impact factor
Impact factor: 5.600 in 2022
RIV identification code
RIV/00216224:14740/23:00132119
Organization unit
Central European Institute of Technology
UT WoS
000991541300001
Keywords in English
chromosome painting; Hyb-Seq; Arabidopsis-related model systems; Brassicaceae; Cruciferae; polyploidy; diploidization; whole-genome duplication (WGD)
Tags
International impact, Reviewed
Změněno: 9/10/2024 12:24, Mgr. Eva Dubská
Abstract
V originále
The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is native to temperate Eurasian woodlands, from eastern Europe to the Russian Far East. Here, we analyzed chromosome number, genome structure, intraspecific genetic variation, and habitat suitability of Catolobus pendulus throughout its range. Unexpectedly, all analyzed populations were hypotetraploid (2n = 30, similar to 330 Mb). Comparative cytogenomic analysis revealed that the Catolobus genome arose by a whole-genome duplication in a diploid genome resembling Ancestral Crucifer Karyotype (ACK, n = 8). In contrast to the much younger Capsella allotetraploid genomes, the presumably autotetraploid Catolobus genome (2n = 32) arose early after the Catolobus/Capsella divergence. Since its origin, the tetraploid Catolobus genome has undergone chromosomal rediploidization, including a reduction in chromosome number from 2n = 32 to 2n = 30. Diploidization occurred through end-to-end chromosome fusion and other chromosomal rearrangements affecting a total of six of 16 ancestral chromosomes. The hypotetraploid Catolobus cytotype expanded toward its present range, accompanied by some longitudinal genetic differentiation. The sister relationship between Catolobus and Capsella allows comparative studies of tetraploid genomes of contrasting ages and different degrees of genome diploidization.
Links
GA21-03909S, research and development project |
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LM2018140, research and development project |
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