J 2023

The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella

FARHAT, Perla, Terezie MALÍK MANDÁKOVÁ, Jan DIVÍŠEK, Hiroshi KUDOH, Dmitry A. GERMAN et. al.

Basic information

Original name

The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella

Authors

FARHAT, Perla (422 Lebanon, belonging to the institution), Terezie MALÍK MANDÁKOVÁ (203 Czech Republic, belonging to the institution), Jan DIVÍŠEK (203 Czech Republic, belonging to the institution), Hiroshi KUDOH, Dmitry A. GERMAN and Martin LYSÁK (203 Czech Republic, guarantor, belonging to the institution)

Edition

Frontiers in Plant Science, Lausanne (Switzerland), Frontiers Media SA, 2023, 1664-462X

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10611 Plant sciences, botany

Country of publisher

Switzerland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

Impact factor

Impact factor: 5.600 in 2022

RIV identification code

RIV/00216224:14740/23:00132119

Organization unit

Central European Institute of Technology

UT WoS

000991541300001

Keywords in English

chromosome painting; Hyb-Seq; Arabidopsis-related model systems; Brassicaceae; Cruciferae; polyploidy; diploidization; whole-genome duplication (WGD)

Tags

Tags

International impact, Reviewed
Změněno: 9/10/2024 12:24, Mgr. Eva Dubská

Abstract

V originále

The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is native to temperate Eurasian woodlands, from eastern Europe to the Russian Far East. Here, we analyzed chromosome number, genome structure, intraspecific genetic variation, and habitat suitability of Catolobus pendulus throughout its range. Unexpectedly, all analyzed populations were hypotetraploid (2n = 30, similar to 330 Mb). Comparative cytogenomic analysis revealed that the Catolobus genome arose by a whole-genome duplication in a diploid genome resembling Ancestral Crucifer Karyotype (ACK, n = 8). In contrast to the much younger Capsella allotetraploid genomes, the presumably autotetraploid Catolobus genome (2n = 32) arose early after the Catolobus/Capsella divergence. Since its origin, the tetraploid Catolobus genome has undergone chromosomal rediploidization, including a reduction in chromosome number from 2n = 32 to 2n = 30. Diploidization occurred through end-to-end chromosome fusion and other chromosomal rearrangements affecting a total of six of 16 ancestral chromosomes. The hypotetraploid Catolobus cytotype expanded toward its present range, accompanied by some longitudinal genetic differentiation. The sister relationship between Catolobus and Capsella allows comparative studies of tetraploid genomes of contrasting ages and different degrees of genome diploidization.

Links

GA21-03909S, research and development project
Name: Odhalení evolučních tajů lničky seté a příbuzných druhů
Investor: Czech Science Foundation, Unlocking evolutionary secrets of false flax and its relatives
LM2018140, research and development project
Name: e-Infrastruktura CZ (Acronym: e-INFRA CZ)
Investor: Ministry of Education, Youth and Sports of the CR