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@article{2345857,
author = {Schäfer, Marco and Brich, Nicolas and Byška, Jan and Marques, Sérgio Manuel and Bednář, David and Thiel, Philipp and Kozlíková, Barbora and Krone, Michael},
article_number = {4},
doi = {http://dx.doi.org/10.1109/TVCG.2023.3337642},
keywords = {proteins; drugs; visualization; data visualization; three-dimensional displays; receptor (biochemistry); carbon},
language = {eng},
issn = {1077-2626},
journal = {IEEE Transactions on Visualization and Computer Graphics},
title = {InVADo: Interactive Visual Analysis of Molecular Docking Data},
url = {https://ieeexplore.ieee.org/document/10334517},
volume = {30},
year = {2024}
}
TY - JOUR
ID - 2345857
AU - Schäfer, Marco - Brich, Nicolas - Byška, Jan - Marques, Sérgio Manuel - Bednář, David - Thiel, Philipp - Kozlíková, Barbora - Krone, Michael
PY - 2024
TI - InVADo: Interactive Visual Analysis of Molecular Docking Data
JF - IEEE Transactions on Visualization and Computer Graphics
VL - 30
IS - 4
SP - 1984-1997
EP - 1984-1997
PB - IEEE Computer Society
SN - 10772626
KW - proteins
KW - drugs
KW - visualization
KW - data visualization
KW - three-dimensional displays
KW - receptor (biochemistry)
KW - carbon
UR - https://ieeexplore.ieee.org/document/10334517
N2 - Molecular docking is a key technique in various fields like structural biology, medicinal chemistry, and biotechnology. It is widely used for virtual screening during drug discovery, computer-assisted drug design, and protein engineering. A general molecular docking process consists of the protein and ligand selection, their preparation, and the docking process itself, followed by the evaluation of the results. However, the most commonly used docking software provides no or very basic evaluation possibilities. Scripting and external molecular viewers are often used, which are not designed for an efficient analysis of docking results. Therefore, we developed InVADo, a comprehensive interactive visual analysis tool for large docking data. It consists of multiple linked 2D and 3D views. It filters and spatially clusters the data, and enriches it with post-docking analysis results of interactions and functional groups, to enable well-founded decision-making. In an exemplary case study, domain experts confirmed that InVADo facilitates and accelerates the analysis workflow. They rated it as a convenient, comprehensive, and feature-rich tool, especially useful for virtual screening. Like what
ER -
SCHÄFER, Marco, Nicolas BRICH, Jan BYŠKA, Sérgio Manuel MARQUES, David BEDNÁŘ, Philipp THIEL, Barbora KOZLÍKOVÁ and Michael KRONE. InVADo: Interactive Visual Analysis of Molecular Docking Data. \textit{IEEE Transactions on Visualization and Computer Graphics}. IEEE Computer Society, 2024, vol.~30, No~4, p.~1984-1997. ISSN~1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2023.3337642.
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