PORUBSKÁ, Jana, Veronika HORSKÁ, Vladimír HORSKÝ and Radka SVOBODOVÁ. Journal metrics and structures: A dynamic interplay. In XXII. Meeting of Biochemists and Molecular Biologists. 2023. ISBN 978-80-280-0409-5.
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Basic information
Original name Journal metrics and structures: A dynamic interplay
Authors PORUBSKÁ, Jana, Veronika HORSKÁ, Vladimír HORSKÝ and Radka SVOBODOVÁ.
Edition XXII. Meeting of Biochemists and Molecular Biologists, 2023.
Other information
Original language English
Type of outcome Conference abstract
Field of Study 10608 Biochemistry and molecular biology
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
WWW Conference website
Organization unit Central European Institute of Technology
ISBN 978-80-280-0409-5
Keywords in English PDB; PDBe; Protein Data Bank; three-dimensional macromolecular structure; validation; database; trends in quality; Journal Impact Factor; Structure Quality Metrics
Changed by Changed by: Mgr. Bc. Jana Porubská, učo 436837. Changed: 23/12/2023 16:27.
Abstract
The basis of scientific research in structural bioinformatics depends on the amount of structural data stored in the Protein Data Bank (PDB). Maintaining structural integrity becomes more critical as the scientific community continually relies on structural models. This underlines the focus on structural validation, where PDB consistently documents the quality of individual structures through various quality metrics. Our research project examines the course of structural quality within various scientific journals. We discuss the relationships between structural quality metrics and journal impact factors. Our approach begins with selecting journals with a significant volume of published structures. Journals are subsequently categorized based on their respective impact factors. In the next phase, we compile a data set containing selected quality factors of these structures. Finally, through rigorous statistical analysis, we provide a detailed description of the nature of structural quality within each journal category.
Links
LM2023055, research and development projectName: Česká národní infrastruktura pro biologická data
Investor: Ministry of Education, Youth and Sports of the CR, ELIXIR-CZ: Czech National Infrastructure for Biological Data
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