Spatiotemporal cell surface generator

WIESNER, David and Julian SUK. Spatiotemporal cell surface generator. 2023.

Basic information

• Original name: Spatiotemporal cell surface generator
• Authors: WIESNER, David (203 Czech Republic, guarantor, belonging to the institution) and Julian SUK (528 Netherlands).
• Edition: 2023.

Other information

• Original language: English
• Type of outcome: Software
• Field of Study: 20200 2.2 Electrical engineering, Electronic engineering, Information engineering
• Country of publisher: Czech Republic
• Confidentiality degree: is not subject to a state or trade secret
• WWW: URL
• RIV identification code: RIV/00216224:14330/23:00133647
• Organization unit: Faculty of Informatics
• Keywords in English: simulation; cell shape; biomedical
• Technical parameters: licence BSD
• Tags: International impact, Reviewed

Abstract

This software implements a generator of 3D time-lapse sequences of complex living cell shapes, including simulation of phenomena occurring during the cell cycle, such as growth, division, and branching protrusions. The tool is programmed in Python using PyTorch.

Abstract (in Czech)

Tento software implementuje generátor 3D časosběrných sekvencí tvarů živých buněk, včetně simulace jevů probíhajících během buněčného cyklu, jako je růst, dělení a větvení výběžků buněčné membrány. Nástroj je naprogramován v jazyce Python s využitím PyTorch.

Links

• LM2023050, research and development project: Name: Národní infrastruktura pro biologické a medicínské zobrazování

Investor: Ministry of Education, Youth and Sports of the CR, Czech BioImaging: National research infrastructure for biological and medical imaging