Complementing model species with model clades

J 2024

Complementing model species with model clades

MABRY, Makenzie E, R Shawn ABRAHAMS, Ihsan A AL-SHEHBAZ, William J BAKER, Simon BARAK et. al.

Basic information

Original name

Complementing model species with model clades

Authors

MABRY, Makenzie E, R Shawn ABRAHAMS, Ihsan A AL-SHEHBAZ, William J BAKER, Simon BARAK, Michael S BARKER, Russell L BARRETT, Aleksandra BERIC, Samik BHATTACHARYA, Sarah B CAREY, Gavin C CONANT, John G CONRAN, Maheshi DASSANAYAKE, Patrick P EDGER, Jocelyn C HALL, Yue HAO, Kasper P HENDRIKS, Julian M HIBBERD, Graham J KING, Daniel J KLIEBENSTEIN, Marcus A KOCH, Ilia J LEITCH, Frederic LENS, Martin LYSÁK (203 Czech Republic, belonging to the institution), Alex C MCALVAY, Michael T W MCKIBBEN, Francesco MERCATI, Richard C MOORE, Klaus MUMMENHOFF, Daniel J MURPHY, Lachezar A NIKOLOV, Michael PISIAS, Eric H ROALSON, M Eric SCHRANZ, Shawn K THOMAS, Qingyi YU, Alan YOCCA, J Chris PIRES and Alex E HARKESS (guarantor)

Edition

Plant Cell, Oxford University Press, 2024, 1040-4651

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10611 Plant sciences, botany

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 11.600 in 2022

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1093/plcell/koad260

UT WoS

001129158300001

Keywords in English

GLUCOSINOLATE-PRODUCING PLANTS; WHOLE-GENOME DUPLICATION; GENE BALANCE HYPOTHESIS; SELF-INCOMPATIBILITY; ARABIDOPSIS-THALIANA; C-4 PHOTOSYNTHESIS; C-3-C-4 INTERMEDIATE; BIOCHEMICAL-CHARACTERIZATION; THELLUNGIELLA-HALOPHILA; DOMINANCE RELATIONSHIPS

Abstract

V originále

Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a "model clade." These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a "model clade" and make suggestions for building global networks to support future studies in the model order Brassicales.

Citovat

MABRY, Makenzie E, R Shawn ABRAHAMS, Ihsan A AL-SHEHBAZ, William J BAKER, Simon BARAK, Michael S BARKER, Russell L BARRETT, Aleksandra BERIC, Samik BHATTACHARYA, Sarah B CAREY, Gavin C CONANT, John G CONRAN, Maheshi DASSANAYAKE, Patrick P EDGER, Jocelyn C HALL, Yue HAO, Kasper P HENDRIKS, Julian M HIBBERD, Graham J KING, Daniel J KLIEBENSTEIN, Marcus A KOCH, Ilia J LEITCH, Frederic LENS, Martin LYSÁK, Alex C MCALVAY, Michael T W MCKIBBEN, Francesco MERCATI, Richard C MOORE, Klaus MUMMENHOFF, Daniel J MURPHY, Lachezar A NIKOLOV, Michael PISIAS, Eric H ROALSON, M Eric SCHRANZ, Shawn K THOMAS, Qingyi YU, Alan YOCCA, J Chris PIRES and Alex E HARKESS. Complementing model species with model clades. Plant Cell. Oxford University Press, 2024, vol. 2023, Jan, p. 1-22. ISSN 1040-4651. Available from: https://dx.doi.org/10.1093/plcell/koad260.

@article{2381878,
   author = {Mabry, Makenzie E and Abrahams, R Shawn and AlandShehbaz, Ihsan A and Baker, William J and Barak, Simon and Barker, Michael S and Barrett, Russell L and Beric, Aleksandra and Bhattacharya, Samik and Carey, Sarah B and Conant, Gavin C and Conran, John G and Dassanayake, Maheshi and Edger, Patrick P and Hall, Jocelyn C and Hao, Yue and Hendriks, Kasper P and Hibberd, Julian M and King, Graham J and Kliebenstein, Daniel J and Koch, Marcus A and Leitch, Ilia J and Lens, Frederic and Lysák, Martin and Mcalvay, Alex C and McKibben, Michael T W and Mercati, Francesco and Moore, Richard C and Mummenhoff, Klaus and Murphy, Daniel J and Nikolov, Lachezar A and Pisias, Michael and Roalson, Eric H and Schranz, M Eric and Thomas, Shawn K and Yu, Qingyi and Yocca, Alan and Pires, J Chris and Harkess, Alex E},
   article_number = {Jan},
   doi = {http://dx.doi.org/10.1093/plcell/koad260},
   keywords = {GLUCOSINOLATE-PRODUCING PLANTS; WHOLE-GENOME DUPLICATION; GENE BALANCE HYPOTHESIS; SELF-INCOMPATIBILITY; ARABIDOPSIS-THALIANA; C-4 PHOTOSYNTHESIS; C-3-C-4 INTERMEDIATE; BIOCHEMICAL-CHARACTERIZATION; THELLUNGIELLA-HALOPHILA; DOMINANCE RELATIONSHIPS},
   language = {eng},
   issn = {1040-4651},
   journal = {Plant Cell},
   title = {Complementing model species with model clades},
   url = {https://academic.oup.com/plcell/advance-article/doi/10.1093/plcell/koad260/7310837},
   volume = {2023},
   year = {2024}
}

TY  - JOUR
ID  - 2381878
AU  - Mabry, Makenzie E - Abrahams, R Shawn - Al-Shehbaz, Ihsan A - Baker, William J - Barak, Simon - Barker, Michael S - Barrett, Russell L - Beric, Aleksandra - Bhattacharya, Samik - Carey, Sarah B - Conant, Gavin C - Conran, John G - Dassanayake, Maheshi - Edger, Patrick P - Hall, Jocelyn C - Hao, Yue - Hendriks, Kasper P - Hibberd, Julian M - King, Graham J - Kliebenstein, Daniel J - Koch, Marcus A - Leitch, Ilia J - Lens, Frederic - Lysák, Martin - Mcalvay, Alex C - McKibben, Michael T W - Mercati, Francesco - Moore, Richard C - Mummenhoff, Klaus - Murphy, Daniel J - Nikolov, Lachezar A - Pisias, Michael - Roalson, Eric H - Schranz, M Eric - Thomas, Shawn K - Yu, Qingyi - Yocca, Alan - Pires, J Chris - Harkess, Alex E
PY  - 2024
TI  - Complementing model species with model clades
JF  - Plant Cell
VL  - 2023
IS  - Jan
SP  - 1-22
EP  - 1-22
PB  - Oxford University Press
SN  - 10404651
KW  - GLUCOSINOLATE-PRODUCING PLANTS
KW  - WHOLE-GENOME DUPLICATION
KW  - GENE BALANCE HYPOTHESIS
KW  - SELF-INCOMPATIBILITY
KW  - ARABIDOPSIS-THALIANA
KW  - C-4 PHOTOSYNTHESIS
KW  - C-3-C-4 INTERMEDIATE
KW  - BIOCHEMICAL-CHARACTERIZATION
KW  - THELLUNGIELLA-HALOPHILA
KW  - DOMINANCE RELATIONSHIPS
UR  - https://academic.oup.com/plcell/advance-article/doi/10.1093/plcell/koad260/7310837
N2  - Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a "model clade." These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a "model clade" and make suggestions for building global networks to support future studies in the model order Brassicales.
ER  -

MABRY, Makenzie E, R Shawn ABRAHAMS, Ihsan A AL-SHEHBAZ, William J BAKER, Simon BARAK, Michael S BARKER, Russell L BARRETT, Aleksandra BERIC, Samik BHATTACHARYA, Sarah B CAREY, Gavin C CONANT, John G CONRAN, Maheshi DASSANAYAKE, Patrick P EDGER, Jocelyn C HALL, Yue HAO, Kasper P HENDRIKS, Julian M HIBBERD, Graham J KING, Daniel J KLIEBENSTEIN, Marcus A KOCH, Ilia J LEITCH, Frederic LENS, Martin LYSÁK, Alex C MCALVAY, Michael T W MCKIBBEN, Francesco MERCATI, Richard C MOORE, Klaus MUMMENHOFF, Daniel J MURPHY, Lachezar A NIKOLOV, Michael PISIAS, Eric H ROALSON, M Eric SCHRANZ, Shawn K THOMAS, Qingyi YU, Alan YOCCA, J Chris PIRES and Alex E HARKESS. Complementing model species with model clades. \textit{Plant Cell}. Oxford University Press, 2024, vol.~2023, Jan, p.~1-22. ISSN~1040-4651. Available from: https://dx.doi.org/10.1093/plcell/koad260.

Detailed Information on Publication Record