LUX, Filip and Petr MATULA. Cell Tracking based on Integer Linear Programming and Probability Scores. In Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging. Athens: IEEE 21th International Symposium on Biomedical Imaging, 2024, 5 pp. ISSN 1945-7928.
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Basic information
Original name Cell Tracking based on Integer Linear Programming and Probability Scores
Authors LUX, Filip and Petr MATULA.
Edition Athens, Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging, 5 pp. 2024.
Publisher IEEE 21th International Symposium on Biomedical Imaging
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Organization unit Faculty of Informatics
ISSN 1945-7928
UT WoS bez WOS
Tags cbia-web
Tags International impact, Reviewed
Changed by Changed by: RNDr. Filip Lux, učo 456519. Changed: 20/3/2024 10:15.
Abstract
The cell tracking problem can be formulated as a global optimization problem based on integer linear (IL) programming. The obtained solution depends on the definition of the IL program and the chosen costs of the events considered in the problem formulation. In general, balancing meaningful costs across different events is difficult. To simplify this problem, we propose a cost assignment approach based on probability scores, allowing us to easily interpret the free parameters. The idea is presented based on the BF-C2DL-HSC dataset from the Cell Tracking Challenge. We show our method reaches state-of-the-art performance when evaluating both technical and biological tracking measures.
Links
GA21-20374S, research and development projectName: Segmentace a sledování buněk se složitým tvarem
Investor: Czech Science Foundation
LM2023050, research and development projectName: Národní infrastruktura pro biologické a medicínské zobrazování
Investor: Ministry of Education, Youth and Sports of the CR, Czech BioImaging: National research infrastructure for biological and medical imaging
MUNI/A/1592/2023, interní kód MUName: Modelování, analýza a verifikace (2024)
Investor: Masaryk University, Modeling, analysis, and verification (2024)
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