J 2020

Structure of two G-quadruplexes in equilibrium in the KRAS promoter

MARQUEVIELLE, Julien, Coralie ROBERT, Olivier LAGRABETTE, Mona WAHID, Anne BOURDONCLE et. al.

Basic information

Original name

Structure of two G-quadruplexes in equilibrium in the KRAS promoter

Authors

MARQUEVIELLE, Julien, Coralie ROBERT, Olivier LAGRABETTE, Mona WAHID, Anne BOURDONCLE, Luigi E XODO, Jean-Louis MERGNY and Gilmar F SALGADO

Edition

Nucleic acids research, Oxford, Oxford University Press, 2020, 0305-1048

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10608 Biochemistry and molecular biology

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 16.971

DOI

http://dx.doi.org/10.1093/nar/gkaa387

UT WoS

000574332700042

Keywords in English

THROUGH-BOND CORRELATION; PANCREATIC-CANCER CELLS; CIRCULAR-DICHROISM; RAS; DNA; POLYMORPHISM; BIND; CRYSTALLOGRAPHY; RESONANCES; MUTATIONS

Tags

CF NMR

Tags

International impact, Reviewed
Změněno: 14/10/2024 17:32, Ing. Jana Kuchtová

Abstract

V originále

KRAS is one of the most mutated oncogenes and still considered an undruggable target. An alternative strategy would consist in targeting its gene rather than the protein, specifically the formation of G-quadruplexes (G4) in its promoter. G4 are secondary structures implicated in biological processes, which can be formed among G-rich DNA (or RNA) sequences. Here we have studied the major conformations of the commonly known KRAS 32R, or simply 32R, a 32 residue sequence within the KRAS Nuclease Hypersensitive Element (NHE) region. We have determined the structure of the two major stable conformers that 32R can adopt and which display slow equilibrium (>ms) with each other. By using different biophysical methods, we found that the nucleotides G9, G25, G28 and G32 are particularly implicated in the exchange between these two conformations. We also showed that a triad at the 3' end further stabilizes one of the G4 conformations, while the second conformer remains more flexible and less stable.

Links

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