GraSR: Protein structural embeddings of AlphaFold DB

NOVOTNÁ, Lucie; Terézia SLANINÁKOVÁ; David PROCHÁZKA; Lukáš HEJTMÁNEK; Adrián ROŠINEC; Jaroslav OĽHA; Katarína GREŠOVÁ; Vlastislav DOHNAL and Matej ANTOL. GraSR: Protein structural embeddings of AlphaFold DB. 2024.

Basic information

Original name

GraSR: Protein structural embeddings of AlphaFold DB

Authors

NOVOTNÁ, Lucie; Terézia SLANINÁKOVÁ; David PROCHÁZKA; Lukáš HEJTMÁNEK; Adrián ROŠINEC; Jaroslav OĽHA; Katarína GREŠOVÁ; Vlastislav DOHNAL and Matej ANTOL

Edition

2024

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Other information

Language

English

Type of outcome

Research and development projects

Field of Study

10201 Computer sciences, information science, bioinformatics

Country of publisher

Czech Republic

Confidentiality degree

is not subject to a state or trade secret

References:

URL

Organization unit

Faculty of Informatics

Keywords in English

protein structure;similarity search;AlphaFold;embeddings;AlphaFind

Tags

AlphaFind, AlphaFold, embeddings, LMI, protein structure, similarity search

Tags

International impact

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Links

GF23-07040K, research and development project	Name: Naučené indexy pro podobností hledání Investor: Czech Science Foundation, Learned Indexing for Similarity Searching, Lead Agency
LM2023055, research and development project	Name: Česká národní infrastruktura pro biologická data Investor: Ministry of Education, Youth and Sports of the CR, ELIXIR-CZ: Czech National Infrastructure for Biological Data
MUNI/A/1590/2023, interní kód MU	Name: Využití technik umělé inteligence pro zpracování dat, komplexní analýzy a vizualizaci rozsáhlých dat Investor: Masaryk University, Using artificial intelligence techniques for data processing, complex analysis and visualization of large-scale data
752/2024, interní kód MU	Name: Nástroj na automatickou anotaci a prohledávání velkých sad proteinů na základě podobnosti jejich struktur Investor: CESNET
90254, large research infrastructures	Name: e-INFRA CZ II