High-resolution cytometry network project: Towards remote and
distributed acquisition, processing and visualisation of 3D
image data in human genome research

D 2002

High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research

KOZUBEK, Michal, Petr MATULA, Pavel MATULA and Petr MEJZLÍK

Basic information

Original name

High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research

Authors

KOZUBEK, Michal (203 Czech Republic, guarantor), Petr MATULA (203 Czech Republic), Pavel MATULA (203 Czech Republic) and Petr MEJZLÍK (203 Czech Republic)

Edition

Los Alamitos, 3D data processing, visualization and transmission, p. 99-106, 2002

Publisher

IEEE Computer Society

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

RIV identification code

RIV/00216224:14330/02:00006217

Organization unit

Faculty of Informatics

ISBN

0-7695-1521-5

UT WoS

000177028700017

Keywords in English

automated microscopy; high-resolution cytometry; FISH imaging; interphase cell nuclei

Abstract

V originále

The absence of common image storage, processing and visualisation approaches is a very serious problem of the collaboration between optical microscopy laboratories. The results produced by individual groups are therefore often not comparable. Even a simple visualisation of image data acquired in a different laboratory is often time-consuming because of the non-existence of a common 3D image file format. In this paper we present a solution to these problems for the specific task of acquisition, storage, processing and visualisation of 3D image data of fluorescently stained genetic material used in the research of the spatial organisation of human genome. We have developed a special software system based on the client/server architecture that enables the collaboration of laboratories active in this field. Each laboratory acquires the 3D image data using its own microscopes but stores them together with a detailed description of the samples on a central high-performance multi-processor UNIX server that acts as a file server, database server and image analysis server that accepts orders from individual clients.

Links

IBS5004010, research and development project

Name: Vývoj nových diagnostických technik pro onkologii

Investor: Academy of Sciences of the Czech Republic, Development of new diagnostic teniques for oncology

MSM 143300002, plan (intention)

Name: Využití počítačové analýzy obrazu v optické mikroskopii

Investor: Ministry of Education, Youth and Sports of the CR, Application of computer image analysis in optical microscopy

Citovat

KOZUBEK, Michal, Petr MATULA, Pavel MATULA and Petr MEJZLÍK. High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research. In 3D data processing, visualization and transmission. Los Alamitos: IEEE Computer Society, 2002, p. 99-106. ISBN 0-7695-1521-5.

@inproceedings{404452,
   author = {Kozubek, Michal and Matula, Petr and Matula, Pavel and Mejzlík, Petr},
   address = {Los Alamitos},
   booktitle = {3D data processing, visualization and transmission},
   keywords = {automated microscopy; high-resolution cytometry; FISH imaging; interphase cell nuclei},
   language = {eng},
   location = {Los Alamitos},
   isbn = {0-7695-1521-5},
   pages = {99-106},
   publisher = {IEEE Computer Society},
   title = {High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research},
   year = {2002}
}

TY  - JOUR
ID  - 404452
AU  - Kozubek, Michal - Matula, Petr - Matula, Pavel - Mejzlík, Petr
PY  - 2002
TI  - High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research
PB  - IEEE Computer Society
CY  - Los Alamitos
SN  - 0769515215
KW  - automated microscopy
KW  - high-resolution cytometry
KW  - FISH imaging
KW  - interphase cell nuclei
N2  - The absence of common image storage, processing and visualisation approaches is a very serious problem of the collaboration between optical microscopy laboratories. The results produced by individual groups are therefore often not comparable. Even a simple visualisation of image data acquired in a different laboratory is often time-consuming because of the non-existence of a common 3D image file format. In this paper we present a solution to these problems for the specific task of acquisition, storage, processing and visualisation of 3D image data of fluorescently stained genetic material used in the research of the spatial organisation of human genome. We have developed a special software system based on the client/server architecture that enables the collaboration of laboratories active in this field. Each laboratory acquires the 3D image data using its own microscopes but stores them together with a detailed description of the samples on a central high-performance multi-processor UNIX server that acts as a file server, database server and image analysis server that accepts orders from individual clients.
ER  -

KOZUBEK, Michal, Petr MATULA, Pavel MATULA and Petr MEJZLÍK. High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research. In \textit{3D data processing, visualization and transmission}. Los Alamitos: IEEE Computer Society, 2002, p.~99-106. ISBN~0-7695-1521-5.

Detailed Information on Publication Record