Algorithms and data representation in the FISH 3.0 image processing system

MEJZLÍK, Petr, Petr MATULA and Pavel MATULA. Algorithms and data representation in the FISH 3.0 image processing system. Online. In Biophysics of the genome and its interactions. Brno: Masaryk University, 2002. p. 80-81. ISBN 80-210-2853-X. [citováno 2024-04-23]

Basic information

• Original name: Algorithms and data representation in the FISH 3.0 image processing system
• Authors: MEJZLÍK, Petr (203 Czech Republic), Petr MATULA (203 Czech Republic, guarantor) and Pavel MATULA (203 Czech Republic)
• Edition: Brno, Biophysics of the genome and its interactions, p. 80-81, 2002.
• Publisher: Masaryk University

Other information

• Original language: English
• Type of outcome: Proceedings paper
• Field of Study: 20200 2.2 Electrical engineering, Electronic engineering, Information engineering
• Country of publisher: Czech Republic
• Confidentiality degree: is not subject to a state or trade secret
• RIV identification code: RIV/00216224:14330/02:00006219
• Organization unit: Faculty of Informatics
• ISBN: 80-210-2853-X
• Keywords in English: image processing; automated microscopy
• Tags: automated microscopy, image processing
• Tags: International impact

Abstract

FISH 3.0 is a new client-server software system developed in the Laboratory of Optical Microscopy at the Faculty of Informatics, Masaryk University. From the technical point of view it differs from its predecessor, FISH 2.0, in the possibility to store data and analyze images on a remote server or cluster. Therefore its performance is not limited by the user's hardware and massive transfers of the 3D image data are not required. FISH 3.0 contains tools for true 3D representation of cell compounds and specific algorithms for 3D image processing. Besides that, every acquired image or a result of analysis stored in the FISH 3.0 system is linked to a dataset with all information necessary to repeat the acquisition or analysis. This contribution mainly concerns the concept of image and cell model representation used in FISH 3.0 and newly implemented algorithms for image analysis. It presents the top-level schema of data representation, FISH 3.0 data formats for 3D images, boundaries and signals, available algorithms, and practical issues concerning data management in FISH 3.0.

Links

• IBS5004010, research and development project: Name: Vývoj nových diagnostických technik pro onkologii

Investor: Academy of Sciences of the Czech Republic, Development of new diagnostic teniques for oncology

• MSM 143300002, plan (intention): Name: Využití počítačové analýzy obrazu v optické mikroskopii

Investor: Ministry of Education, Youth and Sports of the CR, Application of computer image analysis in optical microscopy