LUKÁŠOVÁ, Emilie, Stanislav KOZUBEK, Michal KOZUBEK, Martin FALK and Jana AMRICHOVÁ. The 3D structure of human chromosomes in cell nuclei. Chromosome Research. Dordrecht: Kluwer Academic, 2002, vol. 10, No 7, p. 535-548. ISSN 0967-3849.
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Basic information
Original name The 3D structure of human chromosomes in cell nuclei
Authors LUKÁŠOVÁ, Emilie (203 Czech Republic), Stanislav KOZUBEK (203 Czech Republic, belonging to the institution), Michal KOZUBEK (203 Czech Republic, guarantor, belonging to the institution), Martin FALK (203 Czech Republic) and Jana AMRICHOVÁ (203 Czech Republic, belonging to the institution).
Edition Chromosome Research, Dordrecht, Kluwer Academic, 2002, 0967-3849.
Other information
Original language English
Type of outcome Article in a journal
Field of Study Genetics and molecular biology
Country of publisher Netherlands
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 1.828
RIV identification code RIV/00216224:14330/02:00006557
Organization unit Faculty of Informatics
UT WoS 000178954300002
Keywords in English chromosome structure; confocal microscopy; mathematical models; nuclear architecture
Tags chromosome structure, confocal microscopy, impacted journals+books, mathematical models, nuclear architecture
Tags International impact, Reviewed
Changed by Changed by: doc. RNDr. Martin Falk, Ph.D., učo 9835. Changed: 24/8/2012 12:24.
Abstract
The spatial arrangement of some genetic elements relative to chromosome territories and in parallel with the cell nucleus was investigated in human lymphocytes. The structure of the chromosome territories was studied in chromosomes containing regions (clusters) of highly expressed genes (HSA 9, 17) and those without such clusters (HSA 8, 13). In chromosomes containing highly expressed regions, the elements pertaining to these regions were found close to the centre of the nucleus on the inner sides of chromosome territories; those pertaining to regions with low expression were localized close to the nuclear membrane on the opposite sides of the territories. In chromosomes with generally low expression (HSA 8, 13), the elements investigated were found symmetrically distributed over the territories. Based on the investigations of the chromosome structure, the following conclusions are suggested: (1) Chromosome territories have a non-random internal 3D structure with defined average mutual positions between elements. For example, RARalpha, TP53 and Iso-q of HSA 17 are nearer to each other than they are to the HSA 17 centromere. (2) The structure of a chromosome territory reflects the number and chromosome location of clusters of highly expressed genes. (3) Chromosome territories behave to some extent as solid bodies: if the territory is found closer to the nuclear centre, the individual genetic elements of this chromosome are also found, on average, closer the centre of the nucleus. (4) The positions of centromeres are, on average, nearer to the fluorescence weight centre of the territory (FWCT) than to genes. (5) Active genes are not found near the centromeres of their own territory. A simple model of the structure of chromosome territory is proposed.
Links
GA301/01/0186, research and development projectName: Studium lokální kontroly exprese genů pomocí spektrální mikroskopie a analýzy obrazu
Investor: Czech Science Foundation, Investigation of the local control of gene expression using spectral microscopy and omage analysis techniques
IAA1065203, research and development projectName: Využití kombinace laserových mikrosvazkových a cytometrických technik ke studiu struktury a dynamiky lidského genomu
Investor: Academy of Sciences of the Czech Republic, The use of combination of laser microbeam and cytometric techniques in the study of the structure and dynamics of human genome
IBS5004010, research and development projectName: Vývoj nových diagnostických technik pro onkologii
Investor: Academy of Sciences of the Czech Republic, Development of new diagnostic teniques for oncology
MSM 143300002, plan (intention)Name: Využití počítačové analýzy obrazu v optické mikroskopii
Investor: Ministry of Education, Youth and Sports of the CR, Application of computer image analysis in optical microscopy
NC5955, research and development projectName: Jak může přispět studium prostorového uspořádání specifických genetických lokusů v jádře buněk zdravých a maligních tkání k diagnostice a léčbě solidních tumorů.
Investor: Ministry of Health of the CR, How the study spatial order of specific genetic loci in nuclei of healthy and malignant tissues can contribute to the diagnostics and treatment of solid tumors.
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