VRBKA, Luboš, Petr KLÁN, Zdeněk KŘÍŽ, Jaroslav KOČA and Peter J. WAGNER. Computer Modeling and Simulations on Flexible Bifunctional Systems: Intramolecular Energy Transfer Implications. Journal of Physical Chemistry A. USA: The American Chemical Society, 2003, vol. 107, No 18, p. 3404-3414. ISSN 1089-5639.
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Basic information
Original name Computer Modeling and Simulations on Flexible Bifunctional Systems: Intramolecular Energy Transfer Implications
Authors VRBKA, Luboš (203 Czech Republic), Petr KLÁN (203 Czech Republic, guarantor), Zdeněk KŘÍŽ (203 Czech Republic), Jaroslav KOČA (203 Czech Republic) and Peter J. WAGNER (840 United States of America).
Edition Journal of Physical Chemistry A, USA, The American Chemical Society, 2003, 1089-5639.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10401 Organic chemistry
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 2.792
RIV identification code RIV/00216224:14310/03:00008683
Organization unit Faculty of Science
UT WoS 000182732800032
Keywords in English computational; simulation; flexibility; energy transfer
Tags computational, energy transfer, Flexibility, simulation
Tags International impact
Changed by Changed by: prof. RNDr. Petr Klán, Ph.D., učo 32829. Changed: 9/2/2007 14:21.
Abstract
The conformational search of the potential energy surface using the single coordinate driving method CICADA, molecular dynamics calculations, and quantum mechanical studies using the 6-31G* basis set were used for a detailed analysis of the conformational behavior of various flexible bichromophoric compounds Ph-CO-(CH2)x-O-Ar (x = 3-14; Ar = 2-naphthyl, 2-biphenylyl, 3-biphenylyl, 4-biphenylyl). The results were used for the estimation of the end-to-end intramolecular (exchange) energy transfer efficiency and for comparison to the data recently obtained from the steady-state quenching and quantum yield measurements (Wagner, P. J.; Klan, P. J. Am. Chem. Soc. 1999, 121, 9626-9635). The conformational search clearly supported the dominance of the through-space interaction in longer molecules (x = 5-14), which was still remarkably high even for x = 14. Comparing both computational and experimental results, a ~90% through-bond coupling was estimated for the shortest (x = 3) bichromophores. The molecular dynamics calculations seemed to validate the fact that only a small fraction of ground-state conformations involved ground-state control (static quenching) with the interchromophore distances within 4 Ĺ. Rate-determining bond rotations to such geometries should be then responsible for the energy transfer within the lifetime of the excited donor. The influence of chromophore orientation was found insignificant for long-tether molecules, but important in short-tether ones due to different reactive volumes of different acceptors, such as naphthalene or biphenyl. In addition, a correlation of the calculated average distances between the gamma-hydrogen and the carbonyl oxygen with the experimental hydrogen abstraction rate constants in the Norrish type II process strongly supported the right choice of the computational method.
Links
MSM 143100005, plan (intention)Name: Strukturně-funkční vztahy biomolekul a jejich role v metabolismu
Investor: Ministry of Education, Youth and Sports of the CR, Biomolecular Structure-function Relationships and their role in the Metabolism
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