HRADILOVÁ, Jana and Břetislav BRZOBOHATÝ. Tissue specific alternative splicing in the gene for AHP5, a histidine-containing phosphotransfer protein from Arabidopsis thaliana. In IV. Mezioborové setkání mladých biologů, biochemiků a chemiků, Chemické listy. Praha: Česká společnost chemická, 2004, p. 282. ISBN 0009-2770.
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Basic information
Original name Tissue specific alternative splicing in the gene for AHP5, a histidine-containing phosphotransfer protein from Arabidopsis thaliana
Authors HRADILOVÁ, Jana (203 Czech Republic) and Břetislav BRZOBOHATÝ (203 Czech Republic, guarantor).
Edition Praha, IV. Mezioborové setkání mladých biologů, biochemiků a chemiků, Chemické listy, p. 282-282, 2004.
Publisher Česká společnost chemická
Other information
Original language English
Type of outcome Proceedings paper
Field of Study Genetics and molecular biology
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
Organization unit Faculty of Science
ISBN 0009-2770
Keywords in English AHP5; alternative splicing; two-component system; Arabidopsis thaliana
Tags AHP5, alternative splicing, Arabidopsis thaliana, TWO-COMPONENT SYSTEM
Changed by Changed by: Mgr. Jana Hradilová, Ph.D., učo 21324. Changed: 30/9/2004 15:37.
Abstract
A multistep two-component system is involved in signal transduction in Arabidopsis and consists of a sensory histidine kinase, a phosphotransfer factor and a response regulator. Factors with histidine-containing phosphotransfer domains (AHPs) transfer the phosphoryl group from membrane localised receptor (histidine kinases) to effectors (response regulators) localised in the nucleus. Five AHPs have been identified in Arabidopsis. AHPs are small proteins (14,5 18 kDa), with a predicted acidic isoeletric point (5.53.9) and a typical phosphotransfer domain, including the conserved sequence XHQXKGSSXS. AHP5 comprises six exons and five introns. RNA was prepared using Trizol reagent from different plant tissues: leaves, roots, shoot, flowers, siliques and seedlings. Using RT-PCR we detected two products (AHP5s and AHP5l). Following sequencing, the second intron was found intact at position 211 bp in the longer product (AHP5l). Real time RT-PCR showed that the ratio between spliced and nonspliced products is in tested tissues significant different. Other AHPs (AHP1, AHP2, AHP3 and AHP4) were established to be normally spliced. AHP5l comprises two open reading frames, and in the longer of them the phosphotransfer domain is preserved intact as the original reading frame is not altered. This protein has a predicted molecular mass of 11.7kDa and the putative isoeletric point is 7.72.
Links
MSM 143100008, plan (intention)Name: Genomy a jejich funkce
Investor: Ministry of Education, Youth and Sports of the CR, Genomes and their functions
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