MATOUŠEK, Jiří, Petr KULHÁNEK, Michal ČAJAN and Jaroslav KOČA. Effect of Solvation on Pinched Cone-Pinched Cone Interconversion of Tetraethoxycalix[4]arene and Tetraethoxythiacalix[4]arene. Journal of Physical Chemistry A. 2006, vol. 110, No 3, p. 861-867. ISSN 1089-5639.
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Basic information
Original name Effect of Solvation on Pinched Cone-Pinched Cone Interconversion of Tetraethoxycalix[4]arene and Tetraethoxythiacalix[4]arene
Name in Czech Role solventu v pinched cone - pinched cone interkonverzi tetraethoxycalix[4]arenu a tetraethoxythiacalix[4]arenu
Authors MATOUŠEK, Jiří (203 Czech Republic), Petr KULHÁNEK (203 Czech Republic), Michal ČAJAN (203 Czech Republic) and Jaroslav KOČA (203 Czech Republic, guarantor).
Edition Journal of Physical Chemistry A, 2006, 1089-5639.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10403 Physical chemistry
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 3.047
RIV identification code RIV/00216224:14310/06:00015290
Organization unit Faculty of Science
UT WoS 000235046100004
Keywords in English calixarene; calix[4]arene; molecular dynamics; force field; free energy calculations; solvent
Tags calixarene, calix[4]arene, force field, free energy calculations, molecular dynamics, SOLVENT
Tags International impact, Reviewed
Changed by Changed by: prof. RNDr. Jaroslav Koča, DrSc., učo 610. Changed: 14/2/2007 15:16.
Abstract
The pinched cone-pinched cone interconversion (PCI) of tetraethoxy substituted calix[4]arene and thiacalix[4]arene was studied by means of molecular dynamics using the GAFF force field and quantum mechanics. Influence of solvent was expressed by changes in cavity geometries as well as in free energy barriers that were calculated using constrained MD simulations. Water and chloroform were found to reduce the energy barriers in comparison with vacuum simulations. Only qualitative agreement between energy barriers calculated by MD and experimental values was achieved. Also, quantum chemical calculations were performed with the RI-MP2 method, and a better description of PCI was achieved than that previously obtained by HF or DFT methods. The combination of qualitative MD data on solvated systems with RI-MP2 gas-phase data gave us very good agreement with experimental results.
Abstract (in Czech)
Interkonverze calix[4]arenu
Links
GD204/03/H016, research and development projectName: Strukturní biofyzika makromolekul
Investor: Czech Science Foundation, Structural biophysics of macromolecules
IAA400200503, research and development projectName: Léčiva na bázi sacharidů a calixarenů - design, struktura, protinádorová a protivirová aktivita
Investor: Academy of Sciences of the Czech Republic, Calixarenes based glycodrugs - design, structure, antitumor and antiviral activity
MSM0021622413, plan (intention)Name: Proteiny v metabolismu a při interakci organismů s prostředím
Investor: Ministry of Education, Youth and Sports of the CR, Proteins in metabolism and interaction of organisms with the environment
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