Automated analysis of multi-dimensional biomedical image data
acquired using optical microscopy

D 2006

Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy

KOZUBEK, Michal

Basic information

Original name

Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy

Name in Czech

Automatická analýza vícerozměrných biomedicínských obrazových dat získaných pomocí optické mikroskopie

Authors

KOZUBEK, Michal (203 Czech Republic, guarantor)
Ed. R. Lechnerová, I. Saxl, V. Beneš.

Edition

Prague, Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry, p. 465-476, 2006

Publisher

Union of Czech Mathematicians and Physicists

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Country of publisher

Czech Republic

Confidentiality degree

není předmětem státního či obchodního tajemství

RIV identification code

RIV/00216224:14330/06:00018293

Organization unit

Faculty of Informatics

ISBN

80-7015-037-8

Keywords in English

image analysis; biomedical applications; multidimensional data; human genome; optical microscopy; automation

Abstract

ORIG CZ

V originále

Biomedical image data can be produced by different instruments. In hospitals the most frequent source of such data are computer tomography (CT), magnetic resonance imaging (MRI), ultrasound imaging or X-ray imaging. For research purposes, however, the most frequent instrument is optical microscope (typically cells or their components stained with fluorescent dyes are observed). The image formed in the microscope is recorded using a special low-light camera, transferred to computer memory and analysed by computer. Although camera is a two-dimensional device, more dimensions can be acquired using scanning (e.g., third spatial dimension, spectral dimension, time dimension or viewing angle dimension). Due to the increasing complexity and volume, the resulting multidimensional data often need computer analysis with a high degree of automation. This paper provides an overview in the field of computer analysis of different types of biomedical image data generated by optical microscopy and related automation efforts.

In Czech

Článek se zabývá automatickou analýzou vícerozměrných biomedicínských obrazových dat získaných pomocí optické mikroskopie.

Links

LC535, research and development project

Name: Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii

Investor: Ministry of Education, Youth and Sports of the CR, Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii

MSM0021622419, plan (intention)

Name: Vysoce paralelní a distribuované výpočetní systémy

Investor: Ministry of Education, Youth and Sports of the CR, Highly Parallel and Distributed Computing Systems

Citovat

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. Ed. R. Lechnerová, I. Saxl, V. Beneš. In Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. Prague: Union of Czech Mathematicians and Physicists, 2006, p. 465-476. ISBN 80-7015-037-8.

@inproceedings{708749,
   author = {Kozubek, Michal},
   address = {Prague},
   booktitle = {Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry},
   keywords = {image analysis; biomedical applications; multidimensional data; human genome; optical microscopy; automation},
   language = {eng},
   location = {Prague},
   isbn = {80-7015-037-8},
   pages = {465-476},
   publisher = {Union of Czech Mathematicians and Physicists},
   title = {Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy},
   year = {2006}
}

TY  - JOUR
ID  - 708749
AU  - Kozubek, Michal
PY  - 2006
TI  - Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy
PB  - Union of Czech Mathematicians and Physicists
CY  - Prague
SN  - 8070150378
KW  - image analysis
KW  - biomedical applications
KW  - multidimensional data
KW  - human genome
KW  - optical microscopy
KW  - automation
N2  - Biomedical image data can be produced by different instruments. In hospitals the most frequent source of such data are computer tomography (CT), magnetic resonance imaging (MRI), ultrasound imaging or X-ray imaging. For research purposes, however, the most frequent instrument is optical microscope (typically cells or their components stained with fluorescent dyes are observed). The image formed in the microscope is recorded using a special low-light camera, transferred to computer memory and analysed by computer. Although camera is a two-dimensional device, more dimensions can be acquired using scanning (e.g., third spatial dimension, spectral dimension, time dimension or viewing angle dimension). Due to the increasing complexity and volume, the resulting multidimensional data often need computer analysis with a high degree of automation. This paper provides an overview in the field of computer analysis of different types of biomedical image data generated by optical microscopy and related automation efforts.
ER  -

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. Ed. R. Lechnerová, I. Saxl, V. Beneš. In \textit{Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry}. Prague: Union of Czech Mathematicians and Physicists, 2006, p.~465-476. ISBN~80-7015-037-8.

Detailed Information on Publication Record