Detailed Information on Publication Record
2007
Genomic PCR simulation with hardware-accelerated approximate sequence matching
LEXA, Matej, Tomáš MARTÍNEK, Patrik BECK, Otto FUČÍK, Giorgio VALLE et. al.Basic information
Original name
Genomic PCR simulation with hardware-accelerated approximate sequence matching
Name in Czech
Simulace genomové PCR s hardwarově urychlovaným přibližným vyhledáváním sekvencí
Authors
LEXA, Matej (703 Slovakia, guarantor, belonging to the institution), Tomáš MARTÍNEK (203 Czech Republic), Patrik BECK (703 Slovakia), Otto FUČÍK (203 Czech Republic), Giorgio VALLE (380 Italy) and Ivano ZARA (380 Italy)
Edition
Praha, Proceedings 21st European Conference on Modelling and Simulation, p. 333-338, 6 pp. 2007
Publisher
ECMS
Other information
Language
English
Type of outcome
Stať ve sborníku
Field of Study
20206 Computer hardware and architecture
Country of publisher
Czech Republic
Confidentiality degree
není předmětem státního či obchodního tajemství
RIV identification code
RIV/00216224:14330/07:00041408
Organization unit
Faculty of Informatics
ISBN
978-0-9553018-2-7
UT WoS
000252306400053
Keywords in English
Virtual PCR; FPGA; sequence alignment; mathematical model
Tags
International impact, Reviewed
Změněno: 27/4/2011 09:54, doc. Ing. Matej Lexa, Ph.D.
V originále
We report the latest details on improvements made or planned for the VPCR simulation software currently accessible on the Internet. We describe the inner workings of the dynamic amplification simulation model, concentrating mostly on the time- and sensitivity-critical step of sequence matching. Replacement of BLAST by the more sensitive and faster PRMEX similarity search program resulted in a marked improvement of PCR product predictions. Further speed improvements were acheived using hardware acceleration of approximate sequence matching.
In Czech
Publikace popisuje vylepšení programu pro simulaci PCR na genomových templátech s využitím programu PRIMEX a programovatelného hardwaru na báze FPGA čipů.
Links
| MSM0021622419, plan (intention) |
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