Detailed Information on Publication Record
2007
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
HOLT, Jason A, Sierra Dawn STONEBERG HOLT and Petr BUREŠBasic information
Original name
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
Name in Czech
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
Authors
HOLT, Jason A (840 United States of America), Sierra Dawn STONEBERG HOLT (840 United States of America) and Petr BUREŠ (203 Czech Republic, guarantor, belonging to the institution)
Edition
Taxon, Vienna, International Assoc. for Plant Taxonomy, 2007, 0040-0262
Other information
Language
English
Type of outcome
Článek v odborném periodiku
Field of Study
10600 1.6 Biological sciences
Country of publisher
Austria
Confidentiality degree
není předmětem státního či obchodního tajemství
Impact factor
Impact factor: 2.524
RIV identification code
RIV/00216224:14310/07:00022667
Organization unit
Faculty of Science
UT WoS
000249247400020
Keywords in English
bulking; haplotype frequency confidence intervals; inclusion-exclusion principle; intraspecific sequence studies; phylogeography; proportion estimates
Tags
Tags
International impact, Reviewed
Změněno: 21/4/2011 12:47, prof. RNDr. Petr Bureš, Ph.D.
V originále
Statistical methods are proposed for analyzing the experimental design, preliminary results, and final results of phylogenetic studies of organelle DNA sequence at low taxonomic levels. Such studies require sampling numerous individuals, many of which share identical haplotypes. The proportions of the haplotypes sampled can help answer the following questions: (1) Is one haplotype so dominant that the particular DNA region is without meaningful variation within the scope of the study? (2) Were all prevalent haplotypes found? (3) What are the proportions of each haplotype within the studied group? (4) What percentage of the studied group can be confidently asserted to belong to the haplotypes that were found? Examples are given in which the statistics techniques are applied to data drawn from the botanical literature. Tables are included as a quick reference for the researcher who wishes to circumvent calculation. A Microsoft Excel 2000 spreadsheet (titled HaploPro.xls) for performing some of the more complicated calculations is offered online. Finally, the limitations of these methods and their applicability to nuclear DNA and other characters studies are discussed.
In Czech
Statistical methods are proposed for analyzing the experimental design, preliminary results, and final results of phylogenetic studies of organelle DNA sequence at low taxonomic levels. Such studies require sampling numerous individuals, many of which share identical haplotypes. The proportions of the haplotypes sampled can help answer the following questions: (1) Is one haplotype so dominant that the particular DNA region is without meaningful variation within the scope of the study? (2) Were all prevalent haplotypes found? (3) What are the proportions of each haplotype within the studied group? (4) What percentage of the studied group can be confidently asserted to belong to the haplotypes that were found? Examples are given in which the statistics techniques are applied to data drawn from the botanical literature. Tables are included as a quick reference for the researcher who wishes to circumvent calculation. A Microsoft Excel 2000 spreadsheet (titled HaploPro.xls) for performing some of the more complicated calculations is offered online. Finally, the limitations of these methods and their applicability to nuclear DNA and other characters studies are discussed.
Links
| LC06073, research and development project |
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| MSM0021622416, plan (intention) |
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