MAŠKA, Martin, Jan HUBENÝ, David SVOBODA and Michal KOZUBEK. A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. Online. In 3rd International Symposium on Visual Computing. Berlin, Heidelberg: Spinger-Verlag, 2007, p. 571-581. ISBN 978-3-540-76855-5.
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Basic information
Original name A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy
Name in Czech Porovnání rychlých aproximací Level Set metody pro segmentaci obrazu ve fluorescenční mikroskopii
Authors MAŠKA, Martin (203 Czech Republic, guarantor, belonging to the institution), Jan HUBENÝ (203 Czech Republic, belonging to the institution), David SVOBODA (203 Czech Republic, belonging to the institution) and Michal KOZUBEK (203 Czech Republic, belonging to the institution).
Edition Berlin, Heidelberg, 3rd International Symposium on Visual Computing, p. 571-581, 11 pp. 2007.
Publisher Spinger-Verlag
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher Germany
Confidentiality degree is not subject to a state or trade secret
Publication form electronic version available online
WWW URL
RIV identification code RIV/00216224:14330/07:00022769
Organization unit Faculty of Informatics
ISBN 978-3-540-76855-5
UT WoS 000251785200056
Keywords in English image segmentation; level set method; active contours
Tags active contours, cbia-web, image segmentation, level set method
Tags International impact, Reviewed
Changed by Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
Abstract
Image segmentation, one of the fundamental task of image processing, can be accurately solved using the level set framework. However, the computational time demands of the level set methods make them practically useless, especially for segmentation of large threedimensional images. Many approximations have been introduced in recent years to speed up the computation of the level set methods. Although these algorithms provide favourable results, most of them were not properly tested against ground truth images. In this paper we present a comparison of three methods: the Sparse-Field method [1], Deng and Tsui's algorithm [2] and Nilsson and Heyden's algorithm [3]. Our main motivation was to compare these methods on 3D image data acquired using fluorescence microscope, but we suppose that presented results are also valid and applicable to other biomedical images like CT scans, MRI or ultrasound images. We focus on a comparison of the method accuracy, speed and ability to detect several objects located close to each other for both 2D and 3D images. Furthermore, since the input data of our experiments are artificially generated, we are able to compare obtained segmentation results with ground truth images.
Abstract (in Czech)
Segmentaci obrazu, jednu ze základních úloh zpracování obrazu, lze přesně řešit pomocí Level Set metody.
Links
LC535, research and development projectName: Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii
Investor: Ministry of Education, Youth and Sports of the CR, Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii
MSM0021622419, plan (intention)Name: Vysoce paralelní a distribuované výpočetní systémy
Investor: Ministry of Education, Youth and Sports of the CR, Highly Parallel and Distributed Computing Systems
2B06052, research and development projectName: Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů (Acronym: Biomarker)
Investor: Ministry of Education, Youth and Sports of the CR, Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images
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