Automation of biomedical image acquisition and processing in optical microscopy: Exploring the structure and function of human genome

KOZUBEK, Michal. Automation of biomedical image acquisition and processing in optical microscopy: Exploring the structure and function of human genome. In Seminar of the Centre for Applied Medical Research. 2006.

Basic information

Original name

Automation of biomedical image acquisition and processing in optical microscopy: Exploring the structure and function of human genome

Name in Czech

Automatizace pořizování a zpracování biomedicínských obrazů v optické mikroskopii: Výzkum struktury a funkce lidského genomu

Authors

KOZUBEK, Michal

Edition

Seminar of the Centre for Applied Medical Research, 2006

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Other information

Language

English

Type of outcome

Prezentace na konferencích

Field of Study

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Country of publisher

Spain

Confidentiality degree

není předmětem státního či obchodního tajemství

Organization unit

Faculty of Informatics

Keywords in English

automated microscopy

Tags

automated microscopy

Tags

International impact

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Abstract

V originále

Biomedical image data can be produced by different instruments. For the exploration of the spatial structure and function of human genome, the most frequent instrument is optical microscope (typically cells or their components stained with fluorescent dyes are observed). The image formed in the microscope is recorded using a special low-light camera, transferred to computer memory and analysed by computer. Although camera is a two-dimensional device, more dimensions can be acquired using scanning (e.g., third spatial dimension, spectral dimension, time dimension or viewing angle dimension). Due to the increasing complexity and volume, the resulting multidimensional data often need computer analysis with a high degree of automation. The talk will attend to the computer analysis of different types of biomedical image data generated by optical microscopy and related automation efforts. It will be accompanied by examples on fixed cells, on live cells as well as on cDNA-microarrays.

In Czech

Přednáška se zabývala automatizací pořizování a zpracování biomedicínských obrazů v optické mikroskopii se zaměřením na výzkum struktury a funkce lidského genomu.

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Links

LC535, research and development project	Name: Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii Investor: Ministry of Education, Youth and Sports of the CR, Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii
MSM0021622419, plan (intention)	Name: Vysoce paralelní a distribuované výpočetní systémy Investor: Ministry of Education, Youth and Sports of the CR, Highly Parallel and Distributed Computing Systems
2B06052, research and development project	Name: Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů (Acronym: Biomarker) Investor: Ministry of Education, Youth and Sports of the CR, Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images