ZEISBERGEROVÁ, Marta, Andrea ADÁMKOVÁ and Zdeněk GLATZ. Integration of on-line protein digestion by trypsin in capillary electrophoresis by means of electrophoretically mediated microanalysis. Electrophoresis. Weinheim: VHC, 2009, vol. 30, No 13, p. 2378-2384, 12 pp. ISSN 0173-0835.
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Basic information
Original name Integration of on-line protein digestion by trypsin in capillary electrophoresis by means of electrophoretically mediated microanalysis
Name in Czech Integrace tryptického štěpení proteinů do CE pomocí metody EMMA
Authors ZEISBERGEROVÁ, Marta (203 Czech Republic), Andrea ADÁMKOVÁ (203 Czech Republic) and Zdeněk GLATZ (203 Czech Republic, guarantor).
Edition Electrophoresis, Weinheim, VHC, 2009, 0173-0835.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10600 1.6 Biological sciences
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 3.077
RIV identification code RIV/00216224:14310/09:00029144
Organization unit Faculty of Science
UT WoS 000268626900017
Keywords in English Proteomics; Tryptic digestion; Electrophoretically mediated microanalysis; EMMA; Partial filling technique; Sandwich injection
Tags Electrophoretically mediated microanalysis, EMMA, partial filling technique, proteomics, Sandwich injection, tryptic digestion
Tags International impact, Reviewed
Changed by Changed by: Mgr. Marta Pelcová, Ph.D., učo 14045. Changed: 9/4/2010 10:03.
Abstract
In this work, electrophoretically mediated microanalysis (EMMA) was applied to the in-capillary tryptic digestion of proteins for proteomic purposes. Compared to classical in-solution tryptic digestion or the trypsin reactor commonly used for this purpose, the EMMA based method is rapid, can be automated and requires only small amounts of trypsin and protein preparations. Moreover, the protein digestion and the analysis of the resulting peptides are integrated into one procedure. A combination of the EMMA methodology with a partial filling technique was used in this study, since the pH optimum of the trypsin reaction differs strongly from the best pH for the CE separation of peptides. In this setup, part of the capillary is filled with the best buffer for the tryptic digestion (50 mM Tris-HCl buffer, pH 8.5) whereas the rest of the capillary is filled with the background electrolyte optimal for peptide separation (0.1 M phosphate buffer, pH 2.5).
Abstract (in Czech)
Byla vypracována metoda pro integrace tryptického štěpení proteinů do CE pomocí metody EMMA.
Links
GA203/06/0047, research and development projectName: Využití kapilární elektroforézy pro studium metabolismu léčiv
Investor: Czech Science Foundation, Capillary electrophoresis as a tool for the drug-metabolism studies
LC06023, research and development projectName: Integrované bioanalytické technologie pro mikroanalýzy a diagnostiku s využitím LIF a hmotnostní spektrometrie
Investor: Ministry of Education, Youth and Sports of the CR
MSM0021622413, plan (intention)Name: Proteiny v metabolismu a při interakci organismů s prostředím
Investor: Ministry of Education, Youth and Sports of the CR, Proteins in metabolism and interaction of organisms with the environment
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