| MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA and Marek VINKLER. Acquiarium version 1.6. 2008. |
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| Basic information | |
|---|---|
| Original name | Acquiarium version 1.6 |
| Name in Czech | Acquiarium verze 1.6 |
| Authors | MATULA, Pavel (203 Czech Republic, guarantor, belonging to the institution), Ondřej DANĚK (203 Czech Republic, belonging to the institution), Martin MAŠKA (203 Czech Republic, belonging to the institution) and Marek VINKLER (203 Czech Republic, belonging to the institution). |
| Edition | 2008. |
| Other information | |
|---|---|
| Original language | English |
| Type of outcome | Software |
| Field of Study | 20200 2.2 Electrical engineering, Electronic engineering, Information engineering |
| Country of publisher | Czech Republic |
| Confidentiality degree | is not subject to a state or trade secret |
| WWW | URL |
| RIV identification code | RIV/00216224:14330/08:00027695 |
| Organization unit | Faculty of Informatics |
| Keywords in English | image acquisition; image correction; automated image analysis; fluorescence microscopy |
| Technical parameters | free software distributed as binaries; written in C++ language, version 1.6 |
| Tags | automated image analysis, fluorescence microscopy, image acquisition, image correction |
| Tags | International impact |
| Changed by | Changed by: RNDr. Marek Vinkler, Ph.D., učo 172521. Changed: 27/11/2015 08:08. |
| Abstract |
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| Acquiarium 1.6 is free software for solving the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, quantification of segmented objects and their spatial arrangement, volume rendering, and statistical evaluation. The software is designed for processing of a collection of many 3D images. It can be used for analysis of a collection of 2D images or time lapse series of 2D or 3D images as well. It has a modular design and is extensible via plug-ins. |
| Abstract (in Czech) |
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| Acquiarium 1.6 je volně šiřitelný software pro provádění prostorových studií na buňkách pomocí fluorescenční mikroskopie. Software řeší snímání obrazu, korekce nasnímaných dat, segmentaci obrazu, kvantifikaci segmentovaných objektů a jejich prostorového rozložení, objemové vizualizace a statistické vyhodnocení. Software je navržen pro zpracování kolekce mnoha 3D obrazů. Může však být použit i pro analýzu kolekce 2D obrazů, nebo časových sérií 2D nebo 3D obrazů. Software je modulární a rozšiřitelný pomocí zásuvných modulů. |
| Links | |
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| 2B06052, research and development project | Name: Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů (Acronym: Biomarker) |
| Investor: Ministry of Education, Youth and Sports of the CR, Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images | |
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