KILIAN, Joachim, Dion WHITEHEAD, Jakub HORÁK, Dierk WANKE, Stefan WEINL, Oliver BATISTIC, Cecilia D´ANGELO, Erich BORNBERG-BAUER, Jörg KUDLA and Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Online. The Plant Journal. England: BLACKWELL PUBLISHING, 2007, vol. 50, No 2, p. 347-363. ISSN 0960-7412. [citováno 2024-04-24]
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Basic information
Original name The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
Authors KILIAN, Joachim (276 Germany), Dion WHITEHEAD (826 United Kingdom of Great Britain and Northern Ireland), Jakub HORÁK (203 Czech Republic, guarantor), Dierk WANKE (276 Germany), Stefan WEINL (276 Germany), Oliver BATISTIC (276 Germany), Cecilia D´ANGELO (380 Italy), Erich BORNBERG-BAUER (276 Germany), Jörg KUDLA (276 Germany) and Klaus HARTER (276 Germany)
Edition The Plant Journal, England, BLACKWELL PUBLISHING, 2007, 0960-7412.
Other information
Original language English
Type of outcome Article in a journal
Field of Study Genetics and molecular biology
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
WWW URL
Impact factor Impact factor: 6.751
RIV identification code RIV/00216224:14310/07:00035260
Organization unit Faculty of Science
UT WoS 000245697900014
Keywords in English AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress
Tags abiotic stress, AtGenExpress, bioinformatics, GENE EXPRESSION, microarray
Tags International impact, Reviewed
Changed by Changed by: Mgr. Jakub Horák, Dr. rer. nat., učo 21777. Changed: 12/4/2010 08:43.
Abstract
The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project a comprehensive Arabidopsis thaliana genome transcript expression study was performed using the Affymetrix ATH1 microarray in order to understand these regulatory networks in detail. In contrast to earlier studies, we subjected, side-by-side and in a high-resolution kinetic series, Arabidopsis plants, of identical genotype grown under identical conditions, to different environmental stresses comprising heat, cold, drought, salt, high osmolarity, UV-B light and wounding. Here we describe the technical performance of the experiments. We also present a general overview of environmental abiotic stress-induced gene expression patterns and the results of a model bioinformatics analysis of gene expression in response to UV-B light, drought and cold stress.
Links
MSM0021622415, plan (intention)Name: Molekulární podstata buněčných a tkáňových regulací
Investor: Ministry of Education, Youth and Sports of the CR, Molecular basis of cell and tissue regulations
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