CAVER 2.0

MEDEK, Petr, Petr BENEŠ, Barbora KOZLÍKOVÁ, Eva CHOVANCOVÁ, Antonín PAVELKA, Tibor SZABÓ, Matúš ZAMBORSKÝ, Filip ANDRES, Martin KLVAŇA, Jan BREZOVSKÝ, Jiří SOCHOR and Jiří DAMBORSKÝ. CAVER 2.0. 2008.

Basic information

• Original name: CAVER 2.0
• Name in Czech: CAVER 2.0
• Authors: MEDEK, Petr (203 Czech Republic), Petr BENEŠ (203 Czech Republic), Barbora KOZLÍKOVÁ (203 Czech Republic), Eva CHOVANCOVÁ (203 Czech Republic), Antonín PAVELKA (203 Czech Republic), Tibor SZABÓ (703 Slovakia), Matúš ZAMBORSKÝ (703 Slovakia), Filip ANDRES (203 Czech Republic, guarantor), Martin KLVAŇA (203 Czech Republic), Jan BREZOVSKÝ (203 Czech Republic), Jiří SOCHOR (203 Czech Republic) and Jiří DAMBORSKÝ (203 Czech Republic).
• Edition: 2008.

Other information

• Original language: English
• Type of outcome: Software
• Field of Study: 10600 1.6 Biological sciences
• Country of publisher: Czech Republic
• Confidentiality degree: is not subject to a state or trade secret
• WWW: URL URL URL
• RIV identification code: RIV/00216224:14310/08:00024501
• Organization unit: Faculty of Science
• Keywords (in Czech): tunel výpočet
• Keywords in English: tunnel calculation
• Technical parameters: computer program
• Tags: tunnel calculation
• Tags: International impact

Abstract

CAVER provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in protein structures. Study of these pathways is important in drug design and molecular enzymology. CAVER facilitates analysis of any molecular structure including proteins, nucleic acids, inorganic materials, and is available as online version or PyMOL plugin. CAVER Viewer enables efficient visualization of calculated pathways and can be run online using Java Web Start technology.

Abstract (in Czech)

CAVER poskytuje rychlý a přesný výpočet tunelů v proteinech.

Links

• GA201/07/0927, research and development project: Name: Vizualizace proteinových struktur

Investor: Czech Science Foundation, Visualization of protein structures

• IAA100040602, research and development project: Name: Nové přístupy v elektrochemické analýze nukleových kyselin a oligonukleotidů zaměřené na ultrasensitivní mikrodetekci DNA a detekci DNA hybridizace.

Investor: Academy of Sciences of the Czech Republic, New approaches in electrochemical analysis of nucleic acids and oligonucleotides aimed at a ultrasensitive microdetection of DNA and DNA hybridization

• LC06010, research and development project: Name: Centrum biokatalýzy a biotransformací

Investor: Ministry of Education, Youth and Sports of the CR, Center of Biocatalysis and Biotransformation

• MSM0021622412, plan (intention): Name: Interakce mezi chemickými látkami, prostředím a biologickými systémy a jejich důsledky na globální, regionální a lokální úrovni (INCHEMBIOL) (Acronym: INCHEMBIOL)

Investor: Ministry of Education, Youth and Sports of the CR, Interactions among the chemicals, environment and biological systems and their consequences on the global, regional and local scales (INCHEMBIOL)