FOJTA, Miroslav, Pavel KOSTEČKA, Miroslava BITTOVÁ, Martin BARTOŠÍK, Tibor HIANIK, Libuše TRNKOVÁ and Emil PALEČEK. Electrochemical and capillary zone electrophoresis study of pyrimidine residues modification by osmium tetroxide, 2,2´-bipyridine. Detection of unpaired and mispaired thymines in DNA heteroduplexes. In XXIX. moderní elektrochemické metody - sborník příspěvků. Ústí nad Labem: BEST servis. 2 pp. ISBN 978-80-86238-39-5. 2009.
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Basic information
Original name Electrochemical and capillary zone electrophoresis study of pyrimidine residues modification by osmium tetroxide, 2,2´-bipyridine. Detection of unpaired and mispaired thymines in DNA heteroduplexes.
Name in Czech Elektrochemická a elektroforetická studie pyrimidinových zbytků modifikovaných OsO4, bipy. Detekce nespárovaných a chybně spárovaných thyminů v heteroduplexech DNA
Authors FOJTA, Miroslav (203 Czech Republic), Pavel KOSTEČKA (203 Czech Republic), Miroslava BITTOVÁ (203 Czech Republic, belonging to the institution), Martin BARTOŠÍK (203 Czech Republic), Tibor HIANIK (703 Slovakia), Libuše TRNKOVÁ (203 Czech Republic, belonging to the institution) and Emil PALEČEK (203 Czech Republic, guarantor, belonging to the institution).
Edition Ústí nad Labem, XXIX. moderní elektrochemické metody - sborník příspěvků, 2 pp. 2009.
Publisher BEST servis
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10600 1.6 Biological sciences
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
Publication form printed version "print"
RIV identification code RIV/00216224:14310/09:00036238
Organization unit Faculty of Science
ISBN 978-80-86238-39-5
Keywords in English DNA; OsO4 bipy; voltammetry; capillary electrophoresis
Tags Capillary electrophoresis, DNA, OsO4 bipy, Voltammetry
Changed by Changed by: Mgr. Miroslava Bittová, Ph.D., učo 14556. Changed: 18/1/2013 19:51.
Abstract
In this work we used capillary zone electrophoresis (CZE) in combination with square wave voltammetry (SWV) at a pyrolytic graphite electrode (PGE) to study reactivity of different pyrimidine residues, thymine (T), uracil (U), cytosine (C) and 5 methyl cytosine (meC), within a pentanucleotide AAAAY (where Y stands for the pyrimidine residue), towards Os,bipy. Since adenine practically does not react with Os,L, Y residues represent the only reactive centre within the pentamers and their reactivity can thus be easily compared. Both techniques revealed the order of the Y reactivities as follows: T>>MeC~U>C. Hence, our results confirmed (a) highly preferential modification of T among all Ys and (b) increased reactivity of MeC, compared to C that was reported by other authors. However, despite recent papers presenting Os,L modification as useful tool for MeC detection in DNA, the strong modification of T within natural DNA (where T is much more abundant than MeC) makes this approach hardly applicable for real analyses of DNA methylation.
Abstract (in Czech)
V této práci jsme studovali reaktivitu pyrimidinových derivátů (thymin, uracil, 5 methyluracil, cytosin) a OsO4,bipy pomocí voltametrie a kapilární zónové elektroforézy.
Links
LC06035, research and development projectName: Centrum biofyzikální chemie, bioelektrochemie a bioanalýzy. Nové nástroje pro genomiku, proteomiku a biomedicínu.
Investor: Ministry of Education, Youth and Sports of the CR, Centre of Biophysical Chemistry, Bioelectrochemistry and Bioanalysis. New Tools for Genomics, Proteomics and Biomedicine
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