D 2009

Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ, Jaroslav KOČA et. al.

Basic information

Original name

Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies

Name in Czech

Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies

Authors

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ and Jaroslav KOČA

Edition

Brno, XIII. Setkání biochemiků a molekulárních biologů, p. 3-3, 2009

Publisher

Masarykova Univerzita

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

10600 1.6 Biological sciences

Country of publisher

Czech Republic

Confidentiality degree

není předmětem státního či obchodního tajemství

Organization unit

Faculty of Science

ISBN

978-80-210-4830-0

Keywords (in Czech)

molecular modelling; docking; lectin engineering

Keywords in English

molecular modelling; docking; lectin engineering
Změněno: 9/4/2010 09:16, prof. RNDr. Michaela Wimmerová, Ph.D.

Abstract

V originále

The current computational capacity allows to perform sophisticated simulations and modelling of complicated, yet, for the living organisms essential processes - the biomolecular interactions Lectins are proteins capable of binding saccharide structures with both high affinity and specificity. Several types of molecular modeling applications were combined into a robust method of prediction of the binding behavior of several lectins. The method was tested and validated against the experimental results , and recently, the identification of possible mutations favourable for shifting the binding preferences in desired directions is underway. Besides the protein engineering, the molecular modeling also offered new insights and possible explanations of the molecule behavior in situations where experimental data are not available yet. The use of molecular modeling for in silico predictions can greatly help to increase the efficiency of the whole biomolecular research.

In Czech

Kombinaci nekolika dostupnych prostredku vypocetni chemie a molekuloveho modelovani byla vyvinuta metoda, kterou je mozno vyuzit k in silico modelovani chovani lektin-sacharidoveho systemu v zavislosti na provedenych mutacich. Pouzitim teto metody je mozno usetrit experimentalni cas diky casove nepomerne mensim narokum na urceni potencialne slibnych mutaci in silico.

Links

LC06030, research and development project
Name: Biomolekulární centrum
Investor: Ministry of Education, Youth and Sports of the CR, Biomolecular centre
MSM0021622413, plan (intention)
Name: Proteiny v metabolismu a při interakci organismů s prostředím
Investor: Ministry of Education, Youth and Sports of the CR, Proteins in metabolism and interaction of organisms with the environment