| ŠPAČKOVÁ, Naděžda, Kamila RÉBLOVÁ a Jiri SPONER. Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations. Jouranl of Physical Chemistry B. roč. 114, č. 32, 13 s. ISSN 1520-6106. 2010. |
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@article{900384,
author = {Špačková, Naděžda and Réblová, Kamila and Sponer, Jiri},
article_number = {32},
keywords = {RNA-protein complex; molecular dynamics; kink-turn; A-minor interaction},
language = {eng},
issn = {1520-6106},
journal = {Jouranl of Physical Chemistry B},
title = {Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations},
volume = {114},
year = {2010}
}
TY - JOUR
ID - 900384
AU - Špačková, Naděžda - Réblová, Kamila - Sponer, Jiri
PY - 2010
TI - Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations
JF - Jouranl of Physical Chemistry B
VL - 114
IS - 32
SN - 15206106
KW - RNA-protein complex
KW - molecular dynamics
KW - kink-turn
KW - A-minor interaction
N2 - The study is focused on investigation of Box C/D RNA Kink-Turn with two proteins: native archaeal L7ae protein and human 15.5 kDa protein. The simulations reveal structural details of the studied molecules on nanosecond time scale, i.e. structural dynamics of essential tertiary interaction within kink-turn, reduced kink-turn flexibility upon protein binding, structurally important water molecules and ion binding sites.
ER -
ŠPAČKOVÁ, Naděžda, Kamila RÉBLOVÁ a Jiri SPONER. Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations. \textit{Jouranl of Physical Chemistry B}. roč.~114, č.~32, 13 s. ISSN~1520-6106. 2010.
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