TASLEROVÁ, Renata, Stanislav KOZUBEK, Eva BÁRTOVÁ, Pavla GAJDUŠKOVÁ, Roman KODET and Michal KOZUBEK. Localization of genetic elements of intact and derivative chromosome 11 and 22 territories in nuclei of Ewing sarcoma cells. Journal of Structural Biology. San Diego,USA: Academic Press, 2006, vol. 155, No 3, p. 493-504. ISSN 1047-8477.
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Basic information
Original name Localization of genetic elements of intact and derivative chromosome 11 and 22 territories in nuclei of Ewing sarcoma cells
Authors TASLEROVÁ, Renata (203 Czech Republic), Stanislav KOZUBEK (203 Czech Republic, guarantor), Eva BÁRTOVÁ (203 Czech Republic), Pavla GAJDUŠKOVÁ (203 Czech Republic), Roman KODET (203 Czech Republic) and Michal KOZUBEK (203 Czech Republic).
Edition Journal of Structural Biology, San Diego,USA, Academic Press, 2006, 1047-8477.
Other information
Original language English
Type of outcome Article in a journal
Field of Study Genetics and molecular biology
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 3.496
RIV identification code RIV/00216224:14330/06:00040618
Organization unit Faculty of Informatics
UT WoS 000241168000009
Keywords in English HIGH-RESOLUTION CYTOMETRY; HUMAN LEUKEMIC-CELLS; HUMAN-LYMPHOCYTES; EXCHANGE ABERRATIONS; SPATIAL-ORGANIZATION; INTERPHASE NUCLEUS; BCR GENES; DOMAINS; CYCLE; TOPOGRAPHY
Tags cbia-web
Tags International impact, Reviewed
Changed by Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 30/10/2010 11:09.
Abstract
Recurring chromosomal abnormalities are associated with specific tumour types. The EWSR1 and FLI1 genes are involved in balanced translocation t(11;22)(q24;q12), which is present in more than 85% of Ewing sarcomas. In our previous study, we have found that the fusion genes pertaining to both derivative chromosomes 11 and 22 in Ewing sarcoma cell nuclei are shifted to the midway nuclear position between the native EWSR1 and FLI1 genes. In this contribution we focused our attention at nuclear positioning of other genetic elements of chromosomes 11 and 22 in order to find if the whole derivative chromosomes or only their translocated parts change their nuclear positions in comparison with the native chromosomes. Using repeated fluorescence in situ hybridization and high-resolution cytometry, 2D radial positions of EWSR1, BCR, FLI1, BCL1 genes and fluorescence weight centres of chromosome territories were compared for intact and derivative chromosomes 11 and 22 in nuclei of three Ewing sarcoma samples. Significant radial shift was obtained for the derivative EWSR1, FLI1 and BCL1 genes and for the derivative chromosome 11 compared with the intact ones and not very significant for chromosome 22 and the BCR gene. Our results also suggest that the mean nuclear positions of fusion genes are determined by the final structure of the derivative chromosomes and do not depend on the location of the translocation event. (c) 2006 Elsevier Inc. All rights reserved.
Links
GA202/04/0907, research and development projectName: Cytometrie s vysokým rozlišením na živých buňkách
Investor: Czech Science Foundation, High-resolution cytometry of living cells
IAA5004306, research and development projectName: Struktura lidského genomu
Investor: Academy of Sciences of the Czech Republic, Human genome structure
LC535, research and development projectName: Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii
Investor: Ministry of Education, Youth and Sports of the CR, Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii
MSM 143300002, plan (intention)Name: Využití počítačové analýzy obrazu v optické mikroskopii
Investor: Ministry of Education, Youth and Sports of the CR, Application of computer image analysis in optical microscopy
1A8241, research and development projectName: Nové možnosti diagnostiky leukémií s využitím technologie DNA-mikročipů
Investor: Ministry of Health of the CR, New possibilities of diagnostics of leukemia using DNA-microarrays
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