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@article{966068,
author = {Rapoport, Alexandra E. and Trifonov, Eduard},
article_number = {1-2},
doi = {http://dx.doi.org/10.1016/j.gene.2011.08.002},
keywords = {Amphipathic alpha helices; Evolution of nucleosome positioning pattern; Hidden sequence patterns; Sequence periodicity; Shannon N-gram extension},
language = {eng},
issn = {0378-1119},
journal = {Gene},
title = {"Anticipated" nucleosome positioning pattern in prokaryotes},
volume = {488},
year = {2011}
}
TY - JOUR
ID - 966068
AU - Rapoport, Alexandra E. - Trifonov, Eduard
PY - 2011
TI - "Anticipated" nucleosome positioning pattern in prokaryotes
JF - Gene
VL - 488
IS - 1-2
SP - 41-45
EP - 41-45
PB - Elsevier
SN - 03781119
KW - Amphipathic alpha helices
KW - Evolution of nucleosome positioning pattern
KW - Hidden sequence patterns
KW - Sequence periodicity
KW - Shannon N-gram extension
N2 - Linguistic (word count) analysis of prokaryotic genome sequences, by Shannon N-gram extension, reveals that the dominant hidden motifs in A+T rich genomes are T(A)(T)A and G(A)(T)C with uncertain number of repeating A and T. In this case the above patterns in prokaryotes may be considered as "anticipated" nucleosome positioning patterns which, quite likely, existed in prokaryotic genomes before the evolutionary separation between eukaryotes and prokaryotes.
ER -
RAPOPORT, Alexandra E. and Eduard TRIFONOV. ''Anticipated'' nucleosome positioning pattern in prokaryotes. \textit{Gene}. Elsevier, 2011, vol.~488, 1-2, p.~41-45. ISSN~0378-1119. Available from: https://dx.doi.org/10.1016/j.gene.2011.08.002.
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