J 2011

"Anticipated" nucleosome positioning pattern in prokaryotes

RAPOPORT, Alexandra E. and Eduard TRIFONOV

Basic information

Original name

"Anticipated" nucleosome positioning pattern in prokaryotes

Authors

RAPOPORT, Alexandra E. (376 Israel) and Eduard TRIFONOV (376 Israel, guarantor, belonging to the institution)

Edition

Gene, Elsevier, 2011, 0378-1119

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

Genetics and molecular biology

Country of publisher

Netherlands

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 2.341

RIV identification code

RIV/00216224:14740/11:00054900

Organization unit

Central European Institute of Technology

DOI

UT WoS

000296316400005

Keywords in English

Amphipathic alpha helices; Evolution of nucleosome positioning pattern; Hidden sequence patterns; Sequence periodicity; Shannon N-gram extension

Tags

Tags

International impact, Reviewed
Změněno: 13/4/2012 08:51, Olga Křížová

Abstract

V originále

Linguistic (word count) analysis of prokaryotic genome sequences, by Shannon N-gram extension, reveals that the dominant hidden motifs in A+T rich genomes are T(A)(T)A and G(A)(T)C with uncertain number of repeating A and T. In this case the above patterns in prokaryotes may be considered as "anticipated" nucleosome positioning patterns which, quite likely, existed in prokaryotic genomes before the evolutionary separation between eukaryotes and prokaryotes.

Links

MSM0021622415, plan (intention)
Name: Molekulární podstata buněčných a tkáňových regulací
Investor: Ministry of Education, Youth and Sports of the CR, Molecular basis of cell and tissue regulations
SIGA 792, interní kód MU
Name: CHROMPLANT
Investor: South-Moravian Region, Incoming grants