| BERKA, Karel, Ondřej HANÁK, David SEHNAL, Pavel BANÁŠ, Veronika NAVRÁTILOVÁ, Deepti JAISWAL, Crina-Maria IONESCU, Radka SVOBODOVÁ VAŘEKOVÁ, Jaroslav KOČA a Michal OTYEPKA. MOLEonline 2.0: Interactive Web-based Analysis of Biomacromolecular Channels. Nucleic Acids Research. Oxford, UK: Oxford Press, roč. 40, W1, s. "W222"–"W227", 6 s. ISSN 0305-1048. doi:10.1093/nar/gks363. 2012. |
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@article{991130,
author = {Berka, Karel and Hanák, Ondřej and Sehnal, David and Banáš, Pavel and Navrátilová, Veronika and Jaiswal, Deepti and Ionescu, CrinaandMaria and Svobodová Vařeková, Radka and Koča, Jaroslav and Otyepka, Michal},
article_location = {Oxford, UK},
article_number = {W1},
doi = {http://dx.doi.org/10.1093/nar/gks363},
keywords = {CYTOCHROMES P450; PROTEIN STRUCTURES; NUCLEIC-ACIDS; SUBSTRATE PREFERENCES; POTASSIUM CHANNEL; PHOTOSYSTEM-II; ACTIVE-SITES; IDENTIFICATION; TUNNELS; MACROMOLECULES},
language = {eng},
issn = {0305-1048},
journal = {Nucleic Acids Research},
title = {MOLEonline 2.0: Interactive Web-based Analysis of Biomacromolecular Channels},
url = {http://nar.oxfordjournals.org/content/40/W1/W222.full},
volume = {40},
year = {2012}
}
TY - JOUR
ID - 991130
AU - Berka, Karel - Hanák, Ondřej - Sehnal, David - Banáš, Pavel - Navrátilová, Veronika - Jaiswal, Deepti - Ionescu, Crina-Maria - Svobodová Vařeková, Radka - Koča, Jaroslav - Otyepka, Michal
PY - 2012
TI - MOLEonline 2.0: Interactive Web-based Analysis of Biomacromolecular Channels
JF - Nucleic Acids Research
VL - 40
IS - W1
SP - "W222"–"W227"
EP - "W222"–"W227"
PB - Oxford Press
SN - 03051048
KW - CYTOCHROMES P450
KW - PROTEIN STRUCTURES
KW - NUCLEIC-ACIDS
KW - SUBSTRATE PREFERENCES
KW - POTASSIUM CHANNEL
KW - PHOTOSYSTEM-II
KW - ACTIVE-SITES
KW - IDENTIFICATION
KW - TUNNELS
KW - MACROMOLECULES
UR - http://nar.oxfordjournals.org/content/40/W1/W222.full
L2 - http://nar.oxfordjournals.org/content/40/W1/W222.full
N2 - Biomolecular channels play important roles in many biological systems, e.g. enzymes, ribosomes and ion channels. This article introduces a web-based interactive MOLEonline 2.0 application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties. The users can tune advanced parameters when performing a channel search to direct the search according to their needs. The MOLEonline 2.0 application is freely available via the Internet at http://ncbr.muni.cz/mole or http://mole.upol.cz.
ER -
BERKA, Karel, Ondřej HANÁK, David SEHNAL, Pavel BANÁŠ, Veronika NAVRÁTILOVÁ, Deepti JAISWAL, Crina-Maria IONESCU, Radka SVOBODOVÁ VAŘEKOVÁ, Jaroslav KOČA a Michal OTYEPKA. MOLEonline 2.0: Interactive Web-based Analysis of Biomacromolecular Channels. \textit{Nucleic Acids Research}. Oxford, UK: Oxford Press, roč.~40, W1, s.~''W222''–''W227'', 6 s. ISSN~0305-1048. doi:10.1093/nar/gks363. 2012.
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