Publication Records

WEISSENSTEINER, Matthias H, Marzia A CREMONA, Wilfried M GUIBLET, Nicholas STOLER, Robert S HARRIS, Monika ČECHOVÁ, Kristin A ECKERT, Francesca CHIAROMONTE, Yi-Fei HUANG and Kateryna D MAKOVA. Accurate sequencing of DNA motifs able to form alternative (non-B) structures. Genome research. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT, 2023, vol. 33, No 6, p. 907-922. ISSN 1088-9051. Available from: https://dx.doi.org/10.1101/gr.277490.122.

RHIE, Arang, Sergey NURK, Monika ČECHOVÁ, Savannah J HOYT, Dylan J TAYLOR, Nicolas ALTEMOSE, Paul W HOOK, Sergey KOREN, Mikko RAUTIAINEN, Ivan A ALEXANDROV, Jamie ALLEN, Mobin ASRI, Andrey V BZIKADZE, Nae-Chyun CHEN, Chen-Shan CHIN, Mark DIEKHANS, Paul FLICEK, Giulio FORMENTI, Arkarachai FUNGTAMMASAN, Garcia Giron CARLOS, Erik GARRISON, Ariel GERSHMAN, Jennifer L GERTON, Patrick G S GRADY, Andrea GUARRACINO, Leanne HAGGERTY, Reza HALABIAN, Nancy F HANSEN, Robert HARRIS, Gabrielle A HARTLEY, William T HARVEY, Marina HAUKNESS, Jakob HEINZ, Thibaut HOURLIER, Robert M HUBLEY, Sarah E HUNT, Stephen HWANG, Miten JAIN, Rupesh K KESHARWANI, Alexandra P LEWIS, Li HENG, Glennis A LOGSDON, Julian K LUCAS, Wojciech MAKALOWSKI, Christopher MARKOVIC, Fergal J MARTIN, Ann M Mc CARTNEY, Rajiv C MCCOY, Jennifer MCDANIEL, Brandy M MCNULTY, Paul MEDVEDEV, Alla MIKHEENKO, Katherine M MUNSON, Terence D MURPHY, Hugh E OLSEN, Nathan D OLSON, Luis F PAULIN, David PORUBSKY, Tamara POTAPOVA, Fedor RYABOV, Steven L SALZBERG, Michael E G SAURIA, Fritz J SEDLAZECK, Kishwar SHAFIN, Valery A SHEPELEV, Alaina SHUMATE, Jessica M STORER, Likhitha SURAPANENI, Angella M. Taravella OILL, Francoise THIBAUD-NISSEN, Winston TIMP, Marta TOMASZKIEWICZ, Mitchell R VOLLGER, Brian P WALENZ, Allison C WATWOOD, Matthias H WEISSENSTEINER, Aaron M WENGER, Melissa A WILSON, Samantha ZARATE, Yiming ZHU, Justin M ZOOK, Evan E EICHLER, Rachel J NEILL, Michael C SCHATZ, Karen H MIGA, Kateryna D MAKOVA and Adam M PHILLIPPY. The complete sequence of a human Y chromosome. Nature. BERLIN: NATURE PORTFOLIO, 2023, vol. 621, No 7978, p. 344-354. ISSN 0028-0836. Available from: https://dx.doi.org/10.1038/s41586-023-06457-y.

LEXA, Matej, Monika ČECHOVÁ, Son Hoang NGUYEN, Pavel JEDLIČKA, Viktor TOKAN, Zdeněk KUBÁT, Roman HOBZA and Eduard KEJNOVSKÝ. HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization. BIOINFORMATICS. ENGLAND: OXFORD UNIV PRESS, 2022, vol. 38, No 16, p. 4030-4032. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btac442.

ČECHOVÁ, Monika and Karen H MIGA. Satellite DNAs and human sex chromosome variation. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. LONDON: ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2022, vol. 128, No 128, p. 15-25. ISSN 1084-9521. Available from: https://dx.doi.org/10.1016/j.semcdb.2022.04.022.

ČECHOVÁ, Monika and Vegesna RAHULSIMHAM. Dynamic evolution of great ape Y chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 2020.

ČECHOVÁ, Monika. Probably Correct: Rescuing Repeats with Short and Long Reads. genes. 2020.

ČECHOVÁ, Monika. Ten simple rules for biologists initiating a collaboration with computer scientists. Plos Computational Biology. 2020.

ČECHOVÁ, Monika. High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies. Molecular Biology and Evolution. 2019.

TOMASKIEWICZ, Marta and Monika ČECHOVÁ. A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y. Genome Research. 2016.

MICHALOVOVÁ, Monika, Z KUBAT, Roman HOBZA, Boris VYSKOT and Eduard KEJNOVSKÝ. Fully automated pipeline for detection of sex linked genes using RNA-Seq data. BMC Bioinformatics. London: BioMed Central, 2015, vol. 16, 8 pp. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-015-0509-0.

MICHALOVOVÁ, Monika, Boris VYSKOT and Eduard KEJNOVSKÝ. Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization. Heredity. LONDON: NATURE PUBLISHING GROUP, 2013, vol. 111, No 4, p. 314-320. ISSN 0018-067X. Available from: https://dx.doi.org/10.1038/hdy.2013.51.

KEJNOVSKÝ, Eduard, Monika MICHALOVOVÁ, Pavlína ŠTEFLOVÁ, Iva KEJNOVSKÁ, Susana MANZANO, Roman HOBZA, Zdeněk KUBÁT, Jan KOVAŘÍK, Manuel JAMILENA and Boris VYSKOT. Expansion of Microsatellites on Evolutionary Young Y Chromosome. PLoS One. San Francisco, CA, USA: Public Library of Science, 2013, vol. 8, No 1, p. "nestránkováno", 10 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0045519.