Publication Records

KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Nicola SALVI, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Lukáš ŽÍDEK, Martin BLACKLEDGE and Fabien FERRAGE. Detailed insight into dynamics of C-terminal domain of δ subunit of RNA polymerase from Bacillus subtilis using high-resolution relaxometry. In IDP Community F2F/hybrid meeting. 2023.

ZAPLETAL, Vojtěch, Nicola SALVI, Andrea FLAMM, Zuzana JASEŇÁKOVÁ, Dennis KURZBACH, Mateos BORJA, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Jozef HRITZ, Robert KONRAT, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE and Pavel KADEŘÁVEK. Detailed insight into dynamics of intrinsically disordered proteins using high-resolution relaxometry. 2023.

TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK and Pavel KADEŘÁVEK. Domain 1.1 of σA factor of RNA polymerase from Bacillus subtilis beyond its major state conformation. In Inaugural Biochemistry Symposium Puzzles of (Bio)molecular Structure and Dynamics: NMR spectroscopy and complementary approaches. 2023.

TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK and Pavel KADEŘÁVEK. Characterisation of invisible conformation of domain 1.1 of σA factor of RNA polymerase from Bacillus subtilis. In 19th European Magnetic Resonance Congress, EUROMAR 2023. 2023.

TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžbeta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK and Pavel KADEŘÁVEK. Characterization of a transitionally occupied state and thermal unfolding of domain 1.1 of σ A factor of RNA polymerase from Bacillus subtilis. Proteins: Structure, Function and Bioinformatics. Wiley, vol. 91, No 9, p. 1276-1287. ISSN 0887-3585. doi:10.1002/prot.26531. 2023.

TUŽINČIN, Dávid, Nicola SALVI, Vojtěch ZAPLETAL, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE and Pavel KADEŘÁVEK. Study of the Dynamics of Flexible Subunits of RNA Polymerase from Bacillus subtilis. 2023.

SALVI, Nicola, Vojtěch ZAPLETAL, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE and Pavel KADEŘÁVEK. Convergent views on disordered protein dynamics from NMR and computational approaches. BIOPHYSICAL JOURNAL. UNITED STATES: CELL PRESS, vol. 121, No 20, p. 3785-3794. ISSN 0006-3495. doi:10.1016/j.bpj.2022.09.016. 2022.

PLUCAROVÁ, Jitka, Séverine JANSEN, Alice LANÍKOVÁ and Lukáš ŽÍDEK. Interactions of adaptor protein Grb2 with microtubule associated protein 2c. In XVIII Discussions in Structural Molecular Biology. 2022.

CAMACHO-ZARCO, Aldo R., Vincent SCHNAPKA, Serafima GUSEVA, Anton ABYZOV, Wiktor ADAMSKI, Sigrid MILLES, Malene Ringkjøbing JENSEN, Lukáš ŽÍDEK, Nicola SALVI and Martin BLACKLEDGE. NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins. CHEMICAL REVIEWS. UNITED STATES: AMER CHEMICAL SOC, vol. 122, No 10, p. 9331-9356. ISSN 0009-2665. doi:10.1021/acs.chemrev.1c01023. 2022.

TUŽINČIN, Dávid, Pavel KADEŘÁVEK, Petr PADRTA and Lukáš ŽÍDEK. Seeing the invisible – Study of transiently formed protein conformation found in domain 1.1 of bacterial transcription factor. In XVIII Discussions in Structural Molecular Biology and 5th User Meeting of CIISB (Czech Infrastructure for Integrative Structural Biology). 2022.

PLUCAROVÁ, Jitka, Séverine JANSEN, Subhash NARASIMHAN, Alice LANÍKOVÁ, Marc LEWITZKY, M. Stephan FELLER and Lukáš ŽÍDEK. Specific phosphorylation of microtubule-associated protein 2c by extracellular signal–regulated kinase reduces interactions at its Pro-rich regions. JOURNAL OF BIOLOGICAL CHEMISTRY. UNITED STATES: ELSEVIER, vol. 298, No 10, p. 102384-102399. ISSN 0021-9258. doi:10.1016/j.jbc.2022.102384. 2022.

TAYLOR, C., N. SCHONBERGER, Alice LANÍKOVÁ, M. PATZSCHKE, B. DROBOT, Lukáš ŽÍDEK and F. LEDERER. Investigation of the structure and dynamics of gallium binding to high-affinity peptides elucidated by multi-scale simulation, quantum chemistry, NMR and ITC dagger. Physical Chemistry Chemical Physics. CAMBRIDGE: Royal Society of Chemistry, vol. 23, No 14, p. 8618-8632. ISSN 1463-9076. doi:10.1039/d1cp00356a. 2021.

JASEŇÁKOVÁ, Zuzana, Vojtěch ZAPLETAL, Petr PADRTA, Milan ZACHRDLA, N. BOLIK-COULON, T. MARQUARDSEN, J.M. TYBURN, Lukáš ŽÍDEK, F. FERRAGE and Pavel KADEŘÁVEK. Boosting the resolution of low-field 15N relaxation experiments on intrinsically disordered proteins with triple-resonance NMR. Journal of biomolecular NMR. Dordrecht: Springer, vol. 74, 2-3, p. 139-145. ISSN 0925-2738. doi:10.1007/s10858-019-00298-6. 2020.

ZAPLETAL, Vojtěch, Arnošt MLÁDEK, Kateřina BENDOVÁ, Petr LOUŠA, Erik NOMILNER, Zuzana JASEŇÁKOVÁ, Vojtěch KUBÁŇ, Markéta MAKOVICKÁ, Alice LANÍKOVÁ, Lukáš ŽÍDEK and Jozef HRITZ. Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions. Biophysical Journal. Bethesda, USA: Biophysical Society, vol. 118, No 7, p. 1621-1633. ISSN 0006-3495. doi:10.1016/j.bpj.2020.02.019. 2020.

KUBÁŇ, Vojtěch, P. MACEK, Jozef HRITZ, K. NECHVATALOVA, K. NEDBALCOVA, M. FALDYNA, Peter ŠEBO, Lukáš ŽÍDEK and L. BUMBA. Structural Basis of Ca2+-Dependent Self-Processing Activity of Repeat-in-Toxin Proteins. MBIO. Washington, D.C.: American Society for Microbiology, vol. 11, No 2, p. 1-18. ISSN 2150-7511. doi:10.1128/mBio.00226-20. 2020.

KUBÁŇ, Vojtěch, Pavel SRB, Hana ŠTÉGNEROVÁ, Petr PADRTA, Milan ZACHRDLA, Zuzana JASEŇÁKOVÁ, H. SANDEROVA, D. VITOVSKA, L. KRASNY, T. KOVAL, J. DOHNALEK, J. ZIEMSKA-LEGIECKA, M. GRYNBERG, P. JARNOT, A. GRUCA, M.R. JENSEN, M. BLACKLEDGE and Lukáš ŽÍDEK. Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase. Journal of the American Chemical Society. Washington: American Chemical Society, vol. 141, No 42, p. 16817-16828. ISSN 0002-7863. doi:10.1021/jacs.9b07837. 2019.

MELKOVÁ, Kateřina, Vojtěch ZAPLETAL, Subhash NARASIMHAN, Séverine JANSEN, Jozef HRITZ, R. SKRABANA, M. ZWECKSTETTER, M. RINGKJOBING JENSEN, M. BLACKLEDGE and Lukáš ŽÍDEK. Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences. Biomolecules. Basel, Switzerland: MDPI AG, vol. 9, No 3, p. 105-136. ISSN 2218-273X. doi:10.3390/biom9030105. 2019.

ZAPLETAL, Vojtěch, Kateřina MELKOVÁ, Séverine JANSEN, Erik NOMILNER, M.R. JENSEN, M. BLACKLEDGE and Lukáš ŽÍDEK. Conformation and dynamics of intrinsically disordered microtubule associated protein 2c. ISSN 2211-5463. doi:10.1002/2211-5463.12453. 2018.

MELKOVÁ, Kateřina, Vojtěch ZAPLETAL, Séverine JANSEN, Erik NOMILNER, Milan ZACHRDLA, Jozef HRITZ, Jiří NOVÁČEK, M. ZWECKSTETTER, M.R. JENSEN, M. BLACKLEDGE and Lukáš ŽÍDEK. Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., vol. 293, No 34, p. 13297-13309. ISSN 0021-9258. doi:10.1074/jbc.RA118.001769. 2018.

ZACHRDLA, Milan, Zuzana JASEŇÁKOVÁ and Lukáš ŽÍDEK. Nuclear Magnetic Resonance. In Jan Hejátko, Toshio Hakoshima. Plant Structural Biology: Hormonal Regulations. 1st ed. CHAM: SPRINGER INT PUBLISHING AG. p. 223-221, 25 pp. n/a. ISBN 978-3-319-91352-0. doi:10.1007/978-3-319-91352-0_12. 2018.

ŠPAČKOVÁ, Naděžda, Zuzana TROŠANOVÁ, F. SEBESTA, Séverine JANSEN, J.V. BURDA, Pavel SRB, Milan ZACHRDLA, Lukáš ŽÍDEK and Jiří KOZELKA. Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants. Physical Chemistry Chemical Physics. CAMBRIDGE: Royal Society of Chemistry, vol. 20, No 18, p. 12664-12677. ISSN 1463-9076. doi:10.1039/c7cp08623g. 2018.

BENEŠÍK, Martin, Jiří NOVÁČEK, Lubomír JANDA, Radka DOPITOVÁ, Markéta PERNISOVÁ, Kateřina MELKOVÁ, Lenka TISAKOVA, Jiří DOŠKAŘ, Lukáš ŽÍDEK, Jan HEJÁTKO and Roman PANTŮČEK. Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity. Virus Genes. DORDRECHT: Springer US, vol. 54, No 1, p. 130-139. ISSN 0920-8569. doi:10.1007/s11262-017-1507-2. 2018.

ZAPLETAL, Vojtěch, Arnošt MLÁDEK, Jozef HRITZ and Lukáš ŽÍDEK. Computational characterization of hybrid proteins containing ordered and intrinsically disordered regions. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. ISSN 1742-464X. 2017.

OTRUSINOVÁ, Olga, Gabriel DEMO, Petr PADRTA, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Zuzana GELOVÁ, Agnieszka SZMITKOWSKA, Pavel KADEŘÁVEK, Séverine JANSEN, Milan ZACHRDLA, Tomáš KLUMPLER, Jaromír MAREK, Jozef HRITZ, Lubomír JANDA, Hideo IWAI, Michaela WIMMEROVÁ, Jan HEJÁTKO and Lukáš ŽÍDEK. Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., vol. 292, No 42, p. 17525-17540. ISSN 0021-9258. doi:10.1074/jbc.M117.790212. 2017.

ŽÍDEK, Lukáš and Eva MEIROVITCH. Conformational Entropy from Slowly Relaxing Local Structure Analysis of N-15-H Relaxation in Proteins: Application to Pheromone Binding to MUP-I in the 283-308 K Temperature Range. Journal of Physical Chemistry B. WASHINGTON: AMER CHEMICAL SOC, vol. 121, No 37, p. 8684-8692. ISSN 1520-6106. doi:10.1021/acs.jpcb.7b06049. 2017.

MELKOVÁ, Kateřina, Séverine JANSEN, Jozef HRITZ and Lukáš ŽÍDEK. NMR characterization of intrinsically disordered microtubule associated protein 2c. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. ISSN 1742-464X. 2017.

JANSEN, Séverine, Kateřina MELKOVÁ, Zuzana TROŠANOVÁ, Kateřina HANÁKOVÁ, Milan ZACHRDLA, Jiří NOVÁČEK, Erik ŽUPA, Zbyněk ZDRÁHAL, Jozef HRITZ and Lukáš ŽÍDEK. Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3 zeta-binding sites reveals key differences between MAP2c and its homolog Tau. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., vol. 292, No 16, p. 6715-6727. ISSN 0021-9258. doi:10.1074/jbc.M116.771097. 2017.

ZACHRDLA, Milan, Petr PADRTA, Alzbeta RABATINOVA, Hana SANDEROVA, Ivan BARVIK, Libor KRASNY and Lukáš ŽÍDEK. Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core. Journal of Biological Chemistry. Bethesda: Amer. Soc. Biochem. Mol. Biol., vol. 292, No 28, p. 11610-11617. ISSN 0021-9258. doi:10.1074/jbc.M117.784074. 2017.

SRB, Pavel, Jiří NOVÁČEK, Pavel KADEŘÁVEK, A. RABATINOVA, L. KRÁSNÝ, J. ŽÍDKOVÁ, J. BOBÁĽOVÁ, Vladimír SKLENÁŘ and Lukáš ŽÍDEK. Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer, vol. 69, No 3, p. 133-146. ISSN 0925-2738. doi:10.1007/s10858-017-0138-1. 2017.

SZMITKOWSKA, Agnieszka, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Lukáš ŽÍDEK and Jan HEJÁTKO. ROLE OF IN VITRO PHOSPHORYLATION ASSAY IN UNDERSTADING MSP SIGNALING IN A. THALIANA. In CECE 2016 13 th International Interdisciplinary Meeting on Bioanalysis. ISBN 978-80-904959-4-4. 2016.

KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Radovan FIALA, Pavel SRB, Petr PADRTA, Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ, Mária ŠOLTÉSOVÁ, Jozef KOWALEWSKI, Göran WIDMALM, Josef CHMELÍK, Vladimír SKLENÁŘ and Lukáš ŽÍDEK. Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies. Journal of Magnetic Resonance. San Diego: Academic Press Inc. Elsevier Science, vol. 266, May, p. 23-40. ISSN 1090-7807. doi:10.1016/j.jmr.2016.02.016. 2016.

PEKÁROVÁ, Blanka, Agnieszka SZMITKOWSKA, Radka DOPITOVÁ, Oksana DEGTJARIK, Lukáš ŽÍDEK and Jan HEJÁTKO. Structural Aspects of Multistep Phosphorelay-Mediated Signaling in Plants. Molecular Plant. Cambridge (USA): Cell Press, vol. 9, No 1, p. 71-85. ISSN 1674-2052. doi:10.1016/j.molp.2015.11.008. 2016.

SZMITKOWSKA, Agnieszka, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Jan KOMÁREK, Lukáš ŽÍDEK, Michaela WIMMEROVÁ and Jan HEJÁTKO. STUDIUM INTRACELULÁRNÍCH DOMÉN ETYLÉNOVÉHO RECEPTORU ETR1. In XVI Mezioborové setkání mladých biologů, biochemiků a chemiků. 2016.

PERCZEL, András, Atanas G. ATANASOV, Vladimír SKLENÁŘ, Jiří NOVÁČEK, Veronika PAPOUŠKOVÁ, Pavel KADEŘÁVEK, Lukáš ŽÍDEK, Henryk KOZLOWSKI, Joanna WATLY, Aleksandra HECEL, Paulina KOLKOWSKA, Jaroslav KOČA, Radka SVOBODOVÁ VAŘEKOVÁ, Lukáš PRAVDA, David SEHNAL, Vladimír HORSKÝ, Stanislav GEIDL, Ricardo D. ENRIZ, Pavel MATĚJKA, Adéla JENIŠTOVÁ, Marcela DENDISOVÁ, Alžběta KOKAISLOVÁ, Volkmar WEISSIG, Mark OLSEN, Aidan COFFEY, Jude AJUEBOR, Ruth KEARY, Marta SANZ-GAITERO, Mark J. VAN RAAIJ, Olivia MCAULIFFE, Birgit WALTENBERGER, Andrei MOCAN, Karel ŠMEJKAL, Elke H. HEISS, Marc DIEDERICH, Robert MUSIOL, Janez KOŠMRLJ, Jaroslaw POLANSKI and Josef JAMPÍLEK. The Eighth Central European Conference “Chemistry towards Biology”: Snapshot. MOLECULES. Basel: MDPI AG, vol. 21, No 10, p. nestránkováno, 27 pp. ISSN 1420-3049. doi:10.3390/molecules21101381. 2016.

VÍCHA, Jan, Martin BABINSKÝ, Gabriel DEMO, Olga OTRUSINOVÁ, Séverine JANSEN, Blanka PEKÁROVÁ, Lukáš ŽÍDEK and Markéta MUNZAROVÁ. The influence of Mg2+ coordination on 13C and 15N chemical shifts in CKI1RD protein domain from experiment and molecular dynamics/density functional theory calculations. Proteins: Structure, Function, and Bioinformatics. vol. 84, No 5, p. 686-699. ISSN 0887-3585. doi:10.1002/prot.25019. 2016.

MACRAILD, Christopher A., Milan ZACHRDLA, Dean ANDREW, Bankala KRISHNARJUNA, Jiří NOVÁČEK, Lukáš ŽÍDEK, Vladimír SKLENÁŘ, Jack S. RICHARDS, James G. BEESON, Robin F. ANDERS and Raymond S. NORTON. Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2. PLOS ONE. San Francisco: Public Library Science, vol. 10, No 3, p. "nestránkováno", 18 pp. ISSN 1932-6203. doi:10.1371/journal.pone.0119899. 2015.

KADEŘÁVEK, Pavel, Sarina GRUTSCH, Nicola SALVI, Martin TOLLINGER, Lukáš ŽÍDEK, Geoffrey BODENHAUSEN and Fabien FERRAGE. Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins. Journal of Biomolecular NMR. Dordrecht: Springer, vol. 63, No 4, p. 353-365. ISSN 0925-2738. doi:10.1007/s10858-015-9994-8. 2015.

SZMITKOWSKA, Agnieszka, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Jan KOMÁREK, Lukáš ŽÍDEK, Michaela WIMMEROVÁ and Jan HEJÁTKO. Expression, purification and crystallization of the intracellular domains of the ethylene receptor ETR1 from Arabidopsis thaliana. In XVII. Setkání biochemiků a molekulárních biologů. ISBN 978-80-210-8015-7. 2015.

KUBÁŇ, Vojtěch, Jiří NOVÁČEK, Ladislav BUMBA and Lukáš ŽÍDEK. NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis. Biomolecular NMR Assignments. Dordrecht (Netherlands): Springer Netherlands, vol. 9, No 2, p. 435-440. ISSN 1874-2718. doi:10.1007/s12104-015-9625-z. 2015.

VYMETAL, Jiří, Sreenivas Reddy BATHULA, Jiří ČERNÝ, Radka CHALOUPKOVÁ, Lukáš ŽÍDEK, Vladimír SKLENÁŘ and Jiří VONDRÁŠEK. Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition. PROTEIN ENGINEERING DESIGN & SELECTION. OXFORD: OXFORD UNIV PRESS, vol. 27, No 12, p. 463-472. ISSN 1741-0126. doi:10.1093/protein/gzu046. 2014.

HOUSER, Josef, Jiří NOVÁČEK, Jan KOMÁREK, David BUCHTA, Daniel POKORNÝ, Peter BYSTRICKÝ, Lukáš ŽÍDEK and Michaela WIMMEROVÁ. RSL lectin - a complex approach to study carbohydrate-protein interaction. In 12th Discussions in Structural Molecular Biology. ISSN 1211-5894. 2014.

KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Alžběta RABATINOVÁ, Libor KRÁSNÝ, Vladimír SKLENÁŘ and Lukáš ŽÍDEK. Spectral density mapping protocols for analysis of molecular motions in disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer, vol. 58, No 3, p. 193-207. ISSN 0925-2738. doi:10.1007/s10858-014-9816-4. 2014.

OBR, Martin, Romana HADRAVOVÁ, Michal DOLEŽAL, Ivana KŘÍŽOVÁ, Veronika PAPOUŠKOVÁ, Lukáš ŽÍDEK, Richard HRABAL, Tomáš RUML and Michaela RUMLOVÁ. Stabilization of the beta-hairpin in Mason-Pfizer monkey virus capsid protein- a critical step for infectivity. Retrovirology. London: Biomed Central LTD, vol. 11, October 2014, p. "nestránkováno", 14 pp. ISSN 1742-4690. doi:10.1186/s12977-014-0094-8. 2014.

DEGTJARIK, Oksana, Radka DOPITOVÁ, Blanka PEKÁROVÁ, Tomáš KLUMPLER, Jakub HORÁK, Petra BORKOVCOVÁ, Eliška NEJEDLÁ, David ŘEHA, Sandra PUEHRINGER, Olga OTRUSINOVÁ, Séverine JANSEN, Michal KUTÝ, Manfred S. WEISS, Vladimír SKLENÁŘ, Jaromír MAREK, Veronika PAPOUŠKOVÁ, Lukáš ŽÍDEK, Ivana KUTÁ-SMATANOVÁ, Lubomír JANDA and Jan HEJÁTKO. Structural Biology in Use : NMR, X-ray and Molecular Dynamics Modeling in Study on Multistep Phosphorelay Signaling in Plants. In 6. Metodické dny. 2/2014. p. 52-52. ISSN 1213-6670. 2014.

NOVÁČEK, Jiří, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Toward optimal-resolution NMR of intrinsically disordered proteins. Journal of Magnetic Resonance. San Diego: Academic Press Inc Elsevier Science, vol. 241, April, p. 41-52. ISSN 1090-7807. doi:10.1016/j.jmr.2013.12.008. 2014.

DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Jan KOMÁREK, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Pavel SRB, Alzbeta RABATINOVA, Libor KRÁSNÝ, Lukáš ŽÍDEK, Vladimír SKLENÁŘ and Michaela WIMMEROVÁ. X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase. Journal of Structural Biology. San Diego: Academic Press, vol. 187, No 2, p. 174-186. ISSN 1047-8477. doi:10.1016/j.jsb.2014.06.001. 2014.

NOVÁČEK, Jiří, Lubomír JANDA, Radka DOPITOVÁ, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c. Journal of Biomolecular NMR. Dordrecht: Springer, vol. 56, No 4, p. 291-301. ISSN 0925-2738. doi:10.1007/s10858-013-9761-7. 2013.

NYARKO, Afua, Yujuan SONG, Jiří NOVÁČEK, Lukáš ŽÍDEK and Elisar BARBAR. Multiple Recognition Motifs in Nucleoporin Nup159 Provide a Stable and Rigid Nup159-Dyn2 Assembly. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., vol. 288, No 4, p. 2614-2622. ISSN 0021-9258. doi:10.1074/jbc.M112.432831. 2013.

HABA, Noam Y, Renana GROSS, Jiří NOVÁČEK, Hadassa SHAKED, Lukáš ŽÍDEK, Mira BARDA-SAAD and Jordan H CHILL. NMR Determines Transient Structure and Dynamics in the Disordered C-Terminal Domain of WASp Interacting Protein. Biophysical Journal. CAMBRIDGE: CELL PRESS, vol. 105, No 2, p. 481-493. ISSN 0006-3495. doi:10.1016/j.bpj.2013.05.046. 2013.

PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Alžběta RABATINOVÁ, Hana ŠANDEROVÁ, Jiří NOVÁČEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ and Lukáš ŽÍDEK. Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. ChemBioChem. WEINHEIM: WILEY-VCH Verlag, vol. 14, No 14, p. 1772-1779. ISSN 1439-4227. doi:10.1002/cbic.201300226. 2013.

RABATINOVÁ, Alžbeta, Hana ŠANDEROVÁ, Jitka JIRÁT MATĚJČKOVÁ, Jana KORELUSOVÁ, Luděk SOJKA, Ivan BARVÍK, Veronika PAPOUŠKOVÁ, Vladimír SKLENÁŘ, Lukáš ŽÍDEK and Libor KRÁSNÝ. The Delta Subunit of RNA Polymerase Is Required for Rapid Changes in Gene Expression and Competitive Fitness of the Cell. Journal of Bacteriology. Washington: American Society for Microbiology, vol. 195, No 11, p. 2603-2611. ISSN 0021-9193. doi:10.1128/JB.00188-13. 2013.

DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Jan KOMÁREK, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Pavel SRB, Alzbeta RABATINOVA, Libor KRASNY, Lukáš ŽÍDEK, Vladimír SKLENÁŘ and Michaela WIMMEROVÁ. X ray vs. NMR structure of the N terminal domain of delta subunit of RNA polymerase. In Fifth Joint BER II and BESSY II User Meeting 2013. 2013.

KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Radovan FIALA, Vladimír SKLENÁŘ and Lukáš ŽÍDEK. Accurate Reduced Spectral Density Mapping for Analysis of 13C Relaxation Rates. In 53rd Experimental Nuclear Magnetic Resonance Conference. 2012.

OTRUSINOVÁ, Olga, Séverine JANSEN, Pavel KADEŘÁVEK, Blanka PEKÁROVÁ, Jaromír MAREK, Jan HEJÁTKO, Lubomír JANDA, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. NMR Studies of the Receiver Domain of the CKI1 Sensory Histidine Kinase from Arabidopsis thaliana. In XXVth ICMBRS. 2012.

BYSTRICKÝ, Peter, Marie POKORNÁ, Karel KUBÍČEK, Lukáš ŽÍDEK and Michaela WIMMEROVÁ. NMR STUDY - RALSTONIA SOLANACEARUM LECTIN INTERACTIONS. In 2nd EAST NMR Young Investigator's meeting. 2012.

PAPOUŠKOVÁ, Veronika, Jiří NOVÁČEK, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Anna ZAWADZKA-KAZIMIERCZUK, Krzystof KAZIMIERCZUK, Lukáš ŽÍDEK, Wiktor KOZMINSKI, Libor KRÁSNÝ and Vladimír SKLENÁŘ. NMR study of RNA polymerase delta subunit unique for gram-positive bacteria. ISBN 978-80-86441-43-6. 2012.

BYSTRICKÝ, Peter, Marie POKORNÁ, Karel KUBÍČEK, Michaela WIMMEROVÁ and Lukáš ŽÍDEK. RALSTONIA SOLANACEARUM LECTIN INTERACTIONS, A NMR STUDY. In 26th Intenational Carbohydrate Symposium 2012 abstracts. 2012.

BENEŠÍK, Martin, Jiří NOVÁČEK, Lubomír JANDA, Radka DOPITOVÁ, Lukáš ŽÍDEK, Jiří DOŠKAŘ, Vladislava RŮŽIČKOVÁ and Roman PANTŮČEK. SH3b cell wall binding domain of bacteriophage 812 endolysin. In prof. RNDr. Jiří Doškař. The Student Scientific Conference on Biotechnology. Conference book. Brno: Masarykova univerzita. p. 92-93. ISBN 978-80-210-5811-8. 2012.

BENEŠÍK, Martin, Jiří NOVÁČEK, Lubomír JANDA, Radka DOPITOVÁ, Lukáš ŽÍDEK, Jiří DOŠKAŘ, Vladislava RŮŽIČKOVÁ, Marek MOŠA and Roman PANTŮČEK. SH3b cell wall binding domain of bacteriophage 812 endolysin: Cloning, expression and structure determination. In Viruses of Microbes. From exploration to applications in the -omics era. EMBO Conference Series, Brussels, Belgium. 2012.

DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Hana ŠANDEROVÁ, Lukáš ŽÍDEK and Michaela WIMMEROVÁ. Significant changes between the Xray structure and NMR structure of delta subunit of RNA polymerase (Significant changes between the X-ray structure and NMR structure of delta subunit of RNA polymerase). In Struktura 2012, Cesko-slovenska krystalograficka spolecnost. ISSN 1211-5894. 2012.

NOVÁČEK, Jiří, Noam Y HABA, Jordan H CHILL, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. 4D Non-uniformly sampled HCBCACON and (1) J(NC alpha)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer Netherlands, vol. 53, No 2, p. 139-148. ISSN 0925-2738. doi:10.1007/s10858-012-9631-8. 2012.

BENEŠÍK, Martin, Jiří NOVÁČEK, Lubomír JANDA, Radka DOPITOVÁ, Lukáš ŽÍDEK, Jiří DOŠKAŘ and Roman PANTŮČEK. Cloning and expression of endolysin and its SH3b-domain from polyvalent staphylococcal bacteriophage. In XX. konference mladých mikrobiologů Tomáškovy dny 2011. 2011.

BENEŠÍK, Martin, Jiří NOVÁČEK, Lubomír JANDA, Radka DOPITOVÁ, Lukáš ŽÍDEK, Jiří DOŠKAŘ, Vladislava RŮŽIČKOVÁ, Marek MOŠA and Roman PANTŮČEK. Cloning, expression and structure determination of SH3b cell wall binding domain of bacteriophage 812 endolysin. In Phages 2011 - Bacteriophage Applications, 19-21 September 2011, St Hilda's College, Oxford, UK. 2011.

KADEŘÁVEK, Pavel, Carl DIEHL, Veronika PAPOUŠKOVÁ, Hana ŠANDEROVÁ, Petr PADRTA, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ and Mikael AKKE. Complementation of 3D structure of delta subunit of RNA polymerase from Bacillus subtilis with description of internal motions in terms of reduced spectral density mapping. MATERIALS STRUCTURE. vol. 18, No 1, p. 3-5. ISSN 1211-5894. 2011.

DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Hana ŠANDEROVÁ, Lukáš ŽÍDEK and Michaela WIMMEROVÁ. Crystallization and structure determination of delta-subunit of RNApolymerase. In Higher European Research Course for Users of Large Experimental Systems (HERCULES). 2011.

JANSEN, Séverine, Olga TŘÍSKOVÁ, Blanka PEKÁROVÁ, Tomáš KLUMPLER, Jakub HORÁK, Radka DOPITOVÁ, Jiří NOVÁČEK, Jaromír MAREK, Jan HEJÁTKO, Lubomír JANDA, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Effect of Mg2+ Binding on the Receiver Domain of the CKI1 Sensory Histidine Kinase from Arabidopsis thaliana. Frankfurt am Main, Germany: EUROMAR. p. 325-325. ISBN 978-3-86955-845-5. 2011.

PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Jiří NOVÁČEK, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. NMR study of an RNA polymerase subunit unique for gram-positive bacteria (NMR study of an RNA polymerase subunit unique for gram-positive bacteri). In Gordon Research Conference. 2011.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Séverine JANSEN, Radka DOPITOVÁ, Petra BORKOVCOVÁ, Veronika PAPOUŠKOVÁ, Eliška NEJEDLÁ, Vladimír SKLENÁŘ, Jaromír MAREK, Lukáš ŽÍDEK, Jan HEJÁTKO and Lubomír JANDA. Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana. The Plant Journal. England: BLACKWELL PUBLISHING, vol. 67, No 5, p. 827-839. ISSN 0960-7412. doi:10.1111/j.1365-313X.2011.04637.x. 2011.

PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Jiří NOVÁČEK, Petr PADRTA, Šanderová HANA, Rabatinová ALŽBĚTA, Zawadzka-Kazimierczuk ANNA, Kazimierczuk KRZYSZTOF, Lukáš ŽÍDEK, Kozminski WIKTOR, Krásný LIBOR and Vladimír SKLENÁŘ. Study of RNA polymerase delta subunit unique for gram-positive bacteria. In 9th Discussions in Structural Molecular Biology Nove Hrady. ISSN 1211-5894. 2011.

DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Hana SANDEROVA, Lukáš ŽÍDEK and Michaela WIMMEROVÁ. The X-ray structure versus NMR structure of delta-subunit of RNA-polymerase. In XV. Setkani biochemiku a molekularnich biologu. ISBN 978-80-210-5594-0. 2011.

NOVÁČEK, Jiří, Anna ZAWADZKA-KAZIMIERCZUK, Veronika PAPOUŠKOVÁ, Lukáš ŽÍDEK, Hana ŠANDEROVÁ, Libor KRÁSNÝ, Wiktor KOZMINSKI and Vladimír SKLENÁŘ. 5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion. Journal of Biomolecular NMR. Dordrecht: Springer Netherlands, vol. 50, No 1, p. 1-11. ISSN 0925-2738. doi:10.1007/s10858-011-9496-2. 2011.

KADEŘÁVEK, Pavel, Carl DIEHL, Veronika MOTÁČKOVÁ, Hana ŠANDEROVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ and Mikael AKKE. ANALYSIS OF BACKBONE MOTIONS OF DELTA SUBUNIT OF RNA POLYMERASE FROM BACILLUS SUBTILIS. In 8th Discussions in Structural Molecular Biology Nove Hrady, 2010. 2010.

FIALA, Radovan, Michaela HORNIČÁKOVÁ, Lukáš ŽÍDEK and Norbert MÜLLER. Carbon-detected Experiments for Assignment of Proline Rich Proteins. In 25th NMR Valtice - Central European NMR Meeting. ISBN 978-80-86441-42-9. 2010.

KAVAN, Daniel, Monika KUBÍČKOVÁ, Jan BILÝ, Ondřej VANĚK, Kateřina HOFBAUEROVÁ, Mrázek HYNEK, Rozbeský DANIEL, Bojarová PAVLA, Vladimír KŘEN, Lukáš ŽÍDEK, Vladimír SKLENÁŘ and Karel BEZOUŠKA. Cooperativity between subunits is essential for high affinity binding of N-acetylhexosamines to dimeric soluble and dimeric cellular forms of human CD69. Biochemistry. Washington, USA: American Chemical Society, vol. 49, No 19, p. 4060-4067. ISSN 0006-2960. 2010.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Lukáš ŽÍDEK, Jaromír MAREK, Radka DOPITOVÁ, Jan HEJÁTKO and Lubomír JANDA. Dynamic structure and binding specifity of the receiver domain of sensor histidine kinase CKI1. Tarragona, Spain: IPGSA conference 2010. p. 85-86. 2010.

PAPOUŠKOVÁ, Veronika, Lukáš ŽÍDEK, Vladimír SKLENÁŘ, Libor KRÁSNÝ and Wiktor KOZMINSKI. NMR as a tool for studies of (partially) disordered proteins and their interactions. In Molecular Perspectives on Protein-Protein Interactions. 2010.

MOTÁČKOVÁ, Veronika, Hana ŠANDEROVÁ, Lukáš ŽÍDEK, Jiří NOVÁČEK, Petr PADRTA, Alžběta ŠVENKOVÁ, Jana KORELUSOVÁ, Jiří JONÁK, Libor KRÁSNÝ and Vladimír SKLENÁŘ. Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs. Proteins: Structure, Function, and Bioinformatics. USA: John Wiley and Sons, vol. 78, No 7, p. 1807-1810. ISSN 0887-3585. 2010.

MOTÁČKOVÁ, Veronika, Jiří NOVÁČEK, Anna ZAWADZKA-KAZIMIERCZUK, Krzysztof KAZIMIERCZUK, Lukáš ŽÍDEK, Hana ŠANDEROVÁ, Libor KRÁSNÝ, Wiktor KOZMINSKI and Vladimír SKLENÁŘ. Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments. Journal of Biomolecular NMR. Netherlands: Springer Netherlands, vol. 48, No 3, p. 169-177. ISSN 0925-2738. 2010.

MOTÁČKOVÁ, Veronika, Pavel KADEŘÁVEK, Lukáš ŽÍDEK, Hana ŠANDEROVÁ, Petr PADRTA, Jiří NOVÁČEK, Alžběta ŠVENKOVÁ, Jana KORELUSOVÁ, Anna ZAWADZKA-KAZIMIERCZUK, Krzysztof KAZIMIERCZUK, Wiktor KOŹMIŃSKI, Libor KRÁSNÝ and Vladimír SKLENÁŘ. Structure and dynamics of an RNA polymerase subunit unique for gram-positive bacteria. In Joint EUROMAR 2010 and 17th ISMAR Conference. 2010.

KADEŘÁVEK, Pavel, Veronika MOTÁČKOVÁ, Petr PADRTA, Carl DIEHL, Hana ŠANDEROVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ and Mikael AKKE. Structure and dynamics of delta subunit of RNA polymerase from Bacillus subtilis. In International school of biological magnetic resonance, 10th Course, Biophysics and Structure to Counter Threats and Challenges, Erice 2010. 2010.

MOTÁČKOVÁ, Veronika, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Structure determination of an RNA polymerase subunit unique for gram-positive bacteria. In XIV. Setkání biochemiků a molekulárních biologů. ISBN 978-80-210-5164-5. 2010.

KOVALOVÁ, Anna, Miroslav LEDVINA, David ŠAMAN, Daniel ZYKA, Monika KUBÍČKOVÁ, Lukáš ŽÍDEK, Vladimír SKLENÁŘ, Petr POMPACH, Daniel KAVAN, Jan BILÝ, Ondřej VANĚK, Zuzana KUBÍNKOVÁ, Markéta VANČUROVÁ, Mária ANTOLÍKOVÁ, Zuzana LEJSKOVÁ, Hynek MRÁZEK, Daniel ROZBESKÝ, Kateřina HOFBAUEROVÁ, Vladimír KŘEN and Karel BEZOUŠKA. Synthetic N-acetylglucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ NK cells and killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry. USA: American Chemical Society, vol. 53, No 10, p. 4050-4065. ISSN 0022-2623. 2010.

NOVÁK, Petr, Lukáš ŽÍDEK, Veronika MOTÁČKOVÁ, Petr PADRTA, Alžbeta ŠVENKOVÁ, Jean Marc NUZILLARD, Libor KRÁSNÝ and Vladimír SKLENÁŘ. S3EPY: a Sparky extension for determination of small scalar couplings from spin-state-selective excitation NMR experiments. Journal of Biomolecular NMR. Dordrecht: Springer Netherlands, vol. 46, No 2, p. 191-197. ISSN 0925-2738. 2010.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Lukáš ŽÍDEK, Jaromír MAREK, Radka DOPITOVÁ, Jan HEJÁTKO and Lubomír JANDA. The receiver domain of sensor histidine kinase of CKI1: its dynamic structure and binding specificity. 1st ed. Suzhou, China: Cold Spring Harbor Conferences Asia. p. 47. 2010.

KADEŘÁVEK, Pavel, Carl DIEHL, Veronika MOTÁČKOVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ and Mikael AKKE. Backbone dynamics of N-terminal Domain of the Delta Subunit of Bacterial RNA Polymerase. In Structural Biology Network 13th Annual Conference. 2009.

MOTÁČKOVÁ, Veronika, Monika KUBÍČKOVÁ, Milan KOŽÍŠEK, Klára GRANTZ ŠAŠKOVÁ, Martin ŠVEC, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Backbone 1H, 13C, and 15N NMR assignment for the inactive form of the retroviral protease of the murine intracisternal A-type particle, inMIA-14 PR. Biomolecular NMR Assignments. Netherlands: Springer Netherlands, vol. 3, No 2, p. 261-264. ISSN 1874-2718. 2009.

TŘÍSKOVÁ, Olga, Blanka PEKÁROVÁ, Veronika MOTÁČKOVÁ, Lukáš ŽÍDEK, Vladimír SKLENÁŘ, Jaromír MAREK and Lubomír JANDA. Effects of magnesium binding and beryllofluoridation on a component of the cytokinin signaling pathway studied by nuclear magnetic resonance. 2009.

MATEJKOVÁ, Michaela, Jitka ŽÍDKOVÁ, Lukáš ŽÍDEK, Michaela WIMMEROVÁ, Josef CHMELÍK and Vladimír SKLENÁŘ. Investigation of Thermal Denaturation of Barley Nonspecific Lipid Transfer Protein 1 (ns-LTP1b) by Nuclear Magnetic Resonance and Differential Scanning Calorimetry. Journal of Agricultural and Food Chemistry. WASHINGTON: AMER CHEMICAL SOC, vol. 57, No 18, p. 8444-8452. ISSN 0021-8561. 2009.

BATHULA, Sreenivas Reddy, Jan PALEČEK, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. MAGE (melanoma-associated antigen) Domain structural studies using NMR. In Central European NMR Meeting, Valtice, CR. 2009.

PEKÁROVÁ, Blanka, Olga TŘÍSKOVÁ, Lukáš ŽÍDEK, Jaromír MAREK, Jakub HORÁK, Radka DOPITOVÁ, Jan HEJÁTKO and Lubomír JANDA. NMR analyses of the receiver domain of CKI1 histidine kinase and its interaction with AHP proteins. In ACPD 2009 : Auxins and Cytokinins in Plant Development International Symposium. 2009.

MOTÁČKOVÁ, Veronika, Hana ŠANDEROVÁ, Jiří NOVÁČEK, Lukáš ŽÍDEK, Libor KRÁSNÝ and Vladimír SKLENÁŘ. NMR structural study of N-terminal domain of RNA polymerase delta subunit from Bacillus subtilis. In VII Discussions in Structural Molecular Biology Nové Hrady. ISSN 1211-5894. 2009.

MACEK, Pavel, Josef CHMELÍK, Ivana KŘÍŽOVÁ, Pavel KADEŘÁVEK, Petr PADRTA, Lukáš ŽÍDEK, Marcela WILDOVÁ, Romana HADRAVOVÁ, Radka CHALOUPKOVÁ, Iva PICHOVÁ, Tomáš RUML, Michaela RUMLOVÁ and Vladimír SKLENÁŘ. NMR Structure of the N-Terminal Domain of Capsid Protein from the Mason-Pfizer Monkey Virus. Journal of Molecular Biology. vol. 392, No 1, p. 100-114. ISSN 0022-2836. 2009.

MOTÁČKOVÁ, Veronika, Hana ŠANDEROVÁ, Jiří NOVÁČEK, Lukáš ŽÍDEK, Libor KRÁSNÝ and Vladimír SKLENÁŘ. Structural study of an RNA polymerase subunit unique for gram-positive bacteria. In Central European NMR Meeting Valtice. ISBN 978-80-86441-40-5. 2009.

ŠMAJS, David, Magda DOLEŽALOVÁ, Pavel MACEK and Lukáš ŽÍDEK. Inactivation of colicin Y by intramembrane helix helix interaction with its immunity protein (Inactivation of colicin Y by intramembrane helixhelix interaction with its immunity protein). FEBS Journal. vol. 275, No 21, p. 5325 - 5331. ISSN 1742-464X. 2008.

MOTÁČKOVÁ, Veronika, Monika KUBÍČKOVÁ, Martin ŠVEC, Milan KOŽÍŠEK, Lukáš ŽÍDEK, Jan KONVALINKA and Vladimír SKLENÁŘ. NMR study of a single-stranded DNA binding to the C-terminal domain of the protease from murine intracisternal A-type particle. In XXIII International Conference on Magnetic Resonance in Biological Systems San Diego. 2008.

MACEK, Pavel, Lukáš ŽÍDEK, Michaela RUMLOVÁ, Ivana PÍCHOVÁ and Vladimír SKLENÁŘ. 1H, 13C, and 15N Resonance Assignment of the N-terminal Domain of Mason-Pfizer Monkey Virus Capsid Protein, CA1-140. Biomolecular NMr Assignments. Netherlands: Springer Netherlands, vol. 2, No 1, p. 43-45. ISSN 1874-2718. 2008.

MACEK, Pavel, Petr NOVÁK, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Backbone Motions of Free and Pheromone-Bound Major Urinary Protein I Studied by Molecular Dynamics Simulation. Journal of Physical Chemistry B. USA: The American Chemical Society, vol. 111, No 20, p. 5731-5739. ISSN 1089-5639. 2007.

MACEK, Pavel, Petr NOVÁK, Hana KŘÍŽOVÁ, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Dynamics of major urinary protein-pheromone interactions: Insight by NMR and MD simulations. In ISMAR 2007, Program and Abstracts. Taiwan: Taiwan Magnetic Resonance Society. p. 63-63. 2007.

NOVÁK, Petr, Lukáš ŽÍDEK, Pavel MACEK, Petr PADRTA and Vladimír SKLENÁŘ. Program for Analysis of Internal Motion in Molecular Dynamics Simulation. In Konference mladých vědeckých pracovníků "Strukturní biofyzika makromolekul". Brno: Biofyzikální ústav AV CR a Masarykova univerzita-Přírodovědecká fakulta. 1 pp. 2007.

JANSEN, Séverine, Josef CHMELÍK, Lukáš ŽÍDEK, Petr PADRTA, Petr NOVÁK, Zbyněk ZDRÁHAL, Jean-François PICIMBON, Christer LÖFSTEDT and Vladimír SKLENÁŘ. Structure of Bombyx mori chemosensory protein 1 in solution. Archives of Insect Biochemistry and Physiology. Wiley, vol. 66, No 3, p. 135-145. ISSN 0739-4462. 2007.

MACEK, Pavel, Petr NOVÁK, Hana KŘÍŽOVÁ, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Molecular dynamics study of major urinary protein-pheromone interactions: A structural model for ligand-induced flexibility increase. FEBS Letters. Amsterdam: Elsevier Science B.V., vol. 580, No 1, p. 682-684. ISSN 0014-5793. 2006.

JANSEN, Séverine, Lukáš ŽÍDEK, Christer LÖFSTEDT, Jean-Francois PICIMBON and Vladimír SKLENÁŘ. 1H, 13C, and 15N resonance assignment of Bombyx mori chemosensory protein 1 (BmorCSP1). Journal of Biomolecular NMR. ESCOM Science Publishers B.V., vol. 36, No 5, p. 47-47. ISSN 0925-2738. 2006.

FIALA, Radovan and Lukáš ŽÍDEK. New NMR Methods for Conformational Studies of Biomolecules. Materials Structure. Praha: The Czech and Slovak Cryst. Assoc., vol. 12, No 1, p. 23-24. ISSN 1211-5894. 2005.

NOVÁK, Petr, Lukáš ŽÍDEK, Pavel MACEK, Petr PADRTA and Vladimír SKLENÁŘ. NEW TOOLS FOR AN ANALYSIS OF EXPERIMENTAL (NMR) AND THEORETICAL (MD) DATA. In Konference mladých vědeckých pracovníků "Strukturní biofyzika makromolekul". Brno: Biofyzikální ústav AV CR a Masarykova univerzita-Přírodovědecká fakulta. 1 pp. 2005.

NÁLEZKOVÁ, Monika, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. NMR Study of Protein CD69. In Strukturni biofyzika makromolekul. Czech Republic: MU. p. 13. 2005.

NOVÁK, Petr, Lukáš ŽÍDEK, Petr PADRTA and Vladimír SKLENÁŘ. Refinement of Trypanosoma U6 RNA Stem-Loop Structure Using 1- and 2-Bond Residual Dipolar Couplings. In 19th NMR Valtice. Brno: Masarykova universita v Brně. p. 30-30. ISBN 80-210-3352-5. 2004.

KŘÍŽOVÁ, Hana, Lukáš ŽÍDEK, Martin J. STONE, Milos V. NOVOTNY and Vladimír SKLENÁŘ. Temperature Dependent Spectral Density Analysis Applied to Monitoring Backbone Dynamics of Major Urinary Protein-I Complexed with the Pheromone 2-sec-Butyl-4,5-dihydrothiazole. Journal of Biomolecular NMR. Dordrecht: Kluwer/Escom, vol. 28, No 4, p. 369-384. ISSN 0925-2738. 2004.

ŽÍDEK, Lukáš, Petr PADRTA, Josef CHMELÍK and Vladimír SKLENÁŘ. Internal Consistency of NMR Data Obtained in Partially Aligned Biomacromolecules. Journal of Magnetic Resonance. San Diego: Academic Press, vol. 162, No 1, p. 385-395. ISSN 1090-7807. 2003.

SYCHROVSKÝ, Vladimír, Bohdan SCHNEIDER, Pavel HOBZA, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. The effect of water on NMR spin-spin couplings in DNA: Improvement of calculated values by application of two solvent models. Physical Chemistry Chemical Physics. Great Britain: ROYAL SOC CHEMISTRY, vol. 5, No 4, p. 734-739. ISSN 1463-9076. 2003.

SYCHROVSKÝ, Vladimír, Jaroslav VACEK, Pavel HOBZA, Lukáš ŽÍDEK, Vladimír SKLENÁŘ and Dieter CREMER. Exploring the Structure of a DNA Hairpin with the Help of NMR Spin-spin Coupling Constants: An Experimental and Quantum Chemical Investigation. Journal of Physical Chemistry B. USA: The American Chemical Society, vol. 106, No 29, p. 10242-10250. ISSN 1089-5639. 2002.

SHARROW, Scott D., Jeffrey L. VAUGHN, Lukáš ŽÍDEK, Milos V. NOVOTNY and Martin J STONE. Pheromone binding by polymorphic mouse major urinary proteins. Protein Science. Plainview: Cold Spring Harbor Lab. Press, vol. 11, No 11, p. 2247-2256. ISSN 0961-8368. 2002.

PADRTA, Petr, Richard ŠTEFL, Lukáš KRÁLÍK, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings. Journal of Biomolecular NMR. Dordrecht: Kluwer/Escom, vol. 24, No 1, p. 1-14. ISSN 0925-2738. 2002.

ŽÍDEK, Lukáš, Haihong WU, Juli FEIGON and Vladimír SKLENÁŘ. Measurement of small scalar and resiudal dipolar couplings in purine and pyrimidine bases. Journal of Biomolecular NMR. Dordrecht: Kluwer/Escom, vol. 21, No 2, p. 153-159. ISSN 0925-2738. 2001.

ŽÍDEK, Lukáš, Richard ŠTEFL and Vladimír SKLENÁŘ. NMR methodology for the study of nucleic acids. Current Opinion in Structural Biology. London: Elsevier Science Ltd., vol. 11, No 3, p. 275-281. ISSN 0959-440X. 2001.

TIMM, David E., L. J. BAKER, H MUELLER, Lukáš ŽÍDEK and Milos NOVOTNY. Structural basis of pheromone binding to mouse major urinary protein (MUP-I). Protein Science. Plainview: Cold Spring Harbor Lab. Press, vol. 10, No 5, p. 997-1005. ISSN 0961-8368. 2001.

MECHREF, Yehiya, Lukáš ŽÍDEK, Weidong MA and Milos NOVOTNY. Glycosylated major urinary protein of the house mouse: characterization of its N-linked oligosaccharides. Glycobiology. Oxford: Oxford University Press, vol. 10, No 3, p. 231-235. ISSN 0959-6658. 2000.

STONE, Martin J, Lukáš ŽÍDEK, Susan M LATO, Andrew D ELLINGTON and Milos NOVOTNY. An increase in protein backbone flexibility upon binding a hydrophobic ligand. FASEB Journal. Bethesda: Federation Amer. Soc. Exp. Biol., vol. 13, 7, S, p. A1570, 1 pp. ISSN 0892-6638. 1999.

ŽÍDEK, Lukáš, Milos NOVOTNY and Martin J STONE. Increased protein backbone conformational entropy upon hydrophobic ligand binding. Nature Structural Biology. New York: Nature America Inc., vol. 6, No 12, p. 1118-1121. ISSN 1072-8368. 1999.

ŽÍDEK, Lukáš, Martin J STONE, Susan M LATO, Mark D PAGEL, Zhongshan MIAO, Andrew D ELLINGTON and Milos V NOVOTNY. NMR mapping of the recombinant mouse major urinary protein I binding site occupied by the pheromone 2-sec-butyl-4,5-dihydrothiazole. Biochemistry. Washington: Amer. Chemical Soc., vol. 38, No 31, p. 9850-9861. ISSN 0006-2960. 1999.

NOVOTNY, Milos, Weidong MA, Don WIESLER and Lukáš ŽÍDEK. Positive identification of the puberty-accelerating pheromone of the house mouse: the volatile ligands associating with the major urinary protein. Proceedings of the Royal Society of London, Series B - Biological Sciences. London: Royal Soc. London, vol. 266, No 1432, p. 2017-2022. ISSN 0962-8452. 1999.

NOVOTNY, Milos V., Weidong MA, Lukáš ŽÍDEK and Evgenij DAEV. Recent biochemical insights into puberty acceleration, estrus induction and puberty delay in the house mouse. editors. In JOHNSTON, Robert E., Dietland MULLER-SCHWARTZE and Peter W. SORENSEN. Chemical Signals in Vertebrates 8. New York: Kluwer Academic / Plenum Publishers. p. 99-116. ISBN 0306461145. 1999.

BAKER, Andrew, Lukáš ŽÍDEK, Don WIESLER and Milos NOVOTNY. Reaction of N-Acetylglycyllysine Methyl Ester with 2-Alkenals: An Alternative Model for Covalent Modification of Proteins. Chemical Research in Toxicology. Washington, DC (USA): American Chemical Society, vol. 11, No 7, p. 730-740. ISSN 08993228X. 1998.

ŽÍDEK, Lukáš, Petr DOLEŽEL, Josef CHMELÍK, Andrew G BAKER and Milos NOVOTNY. Modification of horse heart cytochrome c with trans-2-hexenal. Chemical Research in Toxicology. Washington, DC (USA): American Chemical Society, vol. 10, No 6, p. 702-710. ISSN 08993228X. 1997.

ERIKSSON, Kjell-Ove, Lukáš ŽÍDEK and Milos NOVOTNY. Isolation and partial characterization of mucosal pheromone-binding proteins in mice. Abstracts of Papers of the American Chemical Society. Washington: Amer. Chemical Soc., vol. 211, No 1, p. 94. ISSN 0065-7727. 1996.

ŽÍDEK, Lukáš and Miroslav ŘEZÁČ. Kinetics of inhibition of horse liver alcohol-dehydrogenase by p-methylbenzyl hydroperoxide. Journal of Enzyme Inhibition. Reading: Harwood Acad. Publ. GmbH, vol. 7, No 3, p. 191-197. ISSN 8755-5093. 1993.

ŽÍDEK, Lukáš and Michaela WIMMEROVÁ. Osnova paradigmat biochemie? (A plan of the paradigms of biochemistry?). Chemické listy. Praha: Česká společnost chemická, vol. 87, No 1, p. 122-125. ISSN 0009-2770. 1993.

SKURSKÝ, Ladislav, Miroslav ŘEZÁČ, Allah N KHAN, Lukáš ŽÍDEK and Jaroslav ROČEK. Hydroperoxidic inhibitor of horse liver alcohol-dehydrogenase activity, tightly bound to the enzyme-NAD+ complex, characteristically degrades the coenzyme. Journal of Enzyme Inhibition. Reading: Harwood Acad. Publ. GmbH, vol. 6, No 3, p. 211-222. ISSN 8755-5093. 1992.

ŽÍDEK, Lukáš, Miroslav MACHALA and Ladislav SKURSKÝ. Interactions of Organic Hydroperoxides with Heme Proteins. Drug Metabolism and Drug Interactions. Tel Aviv: Freund Publishing House, Ltd., vol. 9, 3-4, p. 209-234. ISSN 0792-5077. 1991.