Publication Records

DVOŘÁK, Pavel, Barbora BURÝŠKOVÁ, Barbora POPELÁŘOVÁ, Birgitta E. EBERT, Tibor BOTKA, Dalimil BUJDOŠ, Alberto SÁNCHEZ-PASCUALA, Hannah SCHÖTTLER, Heiko HAYEN, Víctor DE LORENZO, Lars M. BLANK and Martin BENEŠÍK. Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose. Nature Communications. Nature Portfolio, 2024, vol. 15, March 2024, p. 1-18. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-024-46812-9.

POPELÁŘOVÁ, Barbora, Pavel DVOŘÁK, Nicolas WIRTH and Pablo NIKEL. Base editing unravels the role of P. putida porins in carbohydrate metabolism. 2023.

SITTE, Martin, Barbora POPELÁŘOVÁ and Pavel DVOŘÁK. Comparison of bioproduction capabilities of xylose-grown Pseudomonas putida strains with exogenous phosphoketolase pathway. In XXI. Setkání biochemiků a molekulárních biologů. 2023. ISBN 978-80-280-0409-5.

SITTE, Martin, Barbora POPELÁŘOVÁ and Pavel DVOŘÁK. Comparison of bioproduction capabilities of xylose-grown Pseudomonas putida strains with exogenous phosphoketolase pathway. In GASB 7 x Designer Biology Conference 2023. 2023.

BUJDOŠ, Dalimil, Barbora POPELÁŘOVÁ, Daniel C. VOLKE, Pablo I. NIKEL, Nikolaus SONNENSCHEIN and Pavel DVOŘÁK. Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model. Metabolic Engineering. Elsevier Inc, 2023, vol. 75, January, p. 29-46. ISSN 1096-7176. Available from: https://dx.doi.org/10.1016/j.ymben.2022.10.011.

POPELÁŘOVÁ, Barbora, Pavel DVOŘÁK, Nicolas WIRTH and Pablo NIKEL. Genetic deconstruction of the porin complement in Pseudomonas putida. In GASB 7 Conference Designer Biology. 2023.

BURÝŠKOVÁ, Barbora, Barbora POPELÁŘOVÁ and Pavel DVOŘÁK. Mutualistic bacterial consortium for the co-utilisation of lignocellulosic disaccharides. In GASB 7 Conference x Designer Biology. 2023.

DVOŘÁK, Pavel, Dalimil BUJDOŠ, Barbora POPELÁŘOVÁ, Daniel C. VOLKE, Pablo I. NIKEL and Nikolaus SONNENSCHEIN. PUSH-based Strategy to Increase Glycolytic Flux in Pseudomonas putida from co-Utilized Cellulosic Sugars to Biopolymer Precursors. In 11th European Symposium on Biopolymers ESBP. 2023.

DVOŘÁK, Pavel, Barbora BURÝŠKOVÁ, Barbora POPELÁŘOVÁ, Martin BENEŠÍK and Dalimil BUJDOŠ. Upgrading Pseudomonas putida by systems metabolic engineering for biotechnological processing of lignocellulosic sugars. In Metabolic Engineering 15. 2023.

DVOŘÁK, Pavel, Barbora BURÝŠKOVÁ, Barbora POPELÁŘOVÁ, Dalimil BUJDOŠ and Martin BENEŠÍK. Upgrading Pseudomonas putida by systems metabolic engineering for lignocellulose biotechnology. In FEMS2023 Congress of European Microbiologists. 2023.

BURÝŠKOVÁ, Barbora, Pavel DVOŘÁK and Barbora POPELÁŘOVÁ. Constructing a mutualistic Pseudomonas putida consortium for utilisation of plant waste derived oligosaccharides. In 29. kongres ČSSM s mezinárodní účastí - Brno 2022. 2022. ISBN 978-80-88379-18-8.

BURÝŠKOVÁ, Barbora, Barbora POPELÁŘOVÁ and Pavel DVOŘÁK. Constructing a synthetic cross-feeding Pseudomonas putida consortium for the utilisation of (hemi)cellulose-derived oligosaccharides. In 6th Applied Synthetic Biology in Europe (ASBE VI). 2022.

BURÝŠKOVÁ, Barbora, Barbora BŘENKOVÁ and Pavel DVOŘÁK. Constructing a synthetic pseudomonas putida consortium for utilisation of waste plant biomass oligosaccharides. In XXI. Interdisciplinary meeting of young life scientists. 2022.

DVOŘÁK, Pavel, Dalimil BUJDOŠ, Barbora POPELÁŘOVÁ, Pablo NIKEL and Nikolaus SONNENSCHEIN. Engineering of Pseudomonas putida for fast co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate. In FEMS Conference on Microbiology. 2022.

POPELÁŘOVÁ, Barbora, Pavel DVOŘÁK, Nicolas WIRTH and Pablo I. NIKEL. Genetic deconstruction of the porin complement in Pseudomonas putida. In 29. kongres Československé společnosti mikrobiologické. 2022. ISBN 978-80-88379-18-8.

BENEŠÍK, Martin, Birgitta EBERT, Barbora BURÝŠKOVÁ, Barbora BŘENKOVÁ, Dalimil BUJDOŠ, Pavel DVOŘÁK, Lars BLANK and Alberto SÁNCHEZ-PASCUALA. Elucidation and rational de-bottlenecking of semi-synthetic metabolism of D-xylose in Pseudomonas putida. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section. 2021.

BUJDOŠ, Dalimil, Barbora BŘENKOVÁ, Nikolaus SONNENSCHEIN and Pavel DVOŘÁK. Engineering Pseudomonas putida for co-utilization of cellobiose with glucose. In BioTech 2020. 2021.

BŘENKOVÁ, Barbora, Barbora BURÝŠKOVÁ and Pavel DVOŘÁK. Pseudomonas putida consortium for utilisation of oligosaccharides from plant biomass. In BioTech 2021 Czech-Swiss symposium. 2021. ISBN 978-80-7592-092-8.

BŘENKOVÁ, Barbora, Marta ŠIBOROVÁ, Jiří NOVÁČEK, Pavol BÁRDY, Roman PANTŮČEK and Pavel PLEVKA. Structure of a staphylococcal phage connector protein. In XVI. Discussions in Structural Molecular Biology. 2019.

BŘENKOVÁ, Barbora, Marta ŠIBOROVÁ, Pavol BÁRDY, Roman PANTŮČEK and Pavel PLEVKA. Structure of protein from neck of bacteriophage infecting Staphylococcus aureus. In XV. Discussions in Structural Molecular Biology. 2018.