Masarykova univerzita

Výpis publikací

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Filtrování publikací

    2020

  1. BEYER, Johanna, Charles HANSEN, Mario HLAWITSCHKA, Ingrid HOTZ, Barbora KOZLÍKOVÁ, Gerik SCHEUERMANN, Markus STOMMEL, Marc STREIT, Johannes WASCHKE, Thomas WISCHGOLL a Yong WAN. Case Studies for Working with Domain Experts. In Min Chen, Helwig Hauser, Penny Rheingans, Gerik Scheuermann. Foundations of Data Visualization. Switzerland: Springer, 2020. s. 255-278, 24 s. ISBN 978-3-030-34443-6. doi:10.1007/978-3-030-34444-3.
  2. FURMANOVÁ, Katarína, Ondřej VÁVRA, Barbora KOZLÍKOVÁ, Jiří DAMBORSKÝ, Vojtěch VONÁSEK, David BEDNÁŘ a Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Trajectories. Computer Graphics Forum, Wiley-Blackwell, 2020, roč. 39, č. 6, s. 452-464. ISSN 0167-7055. doi:10.1111/cgf.14048.
  3. KOZLÍKOVÁ, Barbora, Bernhard PREIM, Katja BUHLER a Renata RAIDOU. Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019. : Elsevier ScienceDirect, 2020. doi:10.1016/j.cag.2020.08.009.
  4. KOUŘIL, David, Tobias ISENBERG, Barbora KOZLÍKOVÁ, Miriah MEYER, Eduard GROELLER a Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Transactions on Visualization and Computer Graphics, 2020. ISSN 1077-2626. doi:10.1109/TVCG.2020.2975583.
  5. SABANDO, María Virginia, Pavol ULBRICH, Matías SELZER, Jan BYŠKA, Jan MIČAN, Ignacio PONZONI, Axel J. SOTO, María Luján GANUZA a Barbora KOZLÍKOVÁ. ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Transactions on Visualization and Computer Graphics, IEEE, 2020. ISSN 1077-2626. doi:10.1109/TVCG.2020.3030438.
  6. FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER a Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics, IEEE, 2020, roč. 26, č. 1, s. 843-852. ISSN 1077-2626. doi:10.1109/TVCG.2019.2934333.
  7. ORÉMUŠ, Zoltán, Kahin AKRAM HASSAN, Jiří CHMELÍK, Michaela KŇAŽKOVÁ, Jan BYŠKA, Renata Georgia RAIDOU a Barbora KOZLÍKOVÁ. PINGU: Principles of Interactive Navigation for Geospatial Understanding. In IEEE. 2020 IEEE Pacific Visualization Symposium (PacificVis). Tianjin, China: IEEE PacificVis 2020, 2020. s. 216-225, 10 s. doi:10.1109/PacificVis48177.2020.7567.
  8. VONÁSEK, Vojtěch, Robert PĚNIČKA a Barbora KOZLÍKOVÁ. Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning. Journal of Intelligent & Robotic Systems, Springer Nature B. V., 2020. ISSN 0921-0296. doi:10.1007/s10846-020-01247-4.
  9. REINA, Guido, Hank CHILDS, Krešimir MATKOVIĆ, Katja BÜHLER, Manuela WALDNER, David PUGMIRE, Barbora KOZLÍKOVÁ, Timo ROPINSKI, Patric LJUNG, Takayuki ITOH, Eduard GRÖLLER a Michael KRONE. The Moving Target of Visualization Software for an Ever More Complex World. Computers & Graphics, Netherlands: Elsevier Science Direct, 2020, roč. 87, April, s. 12-29. ISSN 0097-8493. doi:10.1016/j.cag.2020.01.005.
  10. ZÁKOPČANOVÁ, Kristína, Marko ŘEHÁČEK, Jozef BÁTRNA, Daniel PLAKINGER, Sergej STOPPEL a Barbora KOZLÍKOVÁ. Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Transactions on Visualization and Computer Graphics, IEEE, 2020. ISSN 1077-2626. doi:10.1109/TVCG.2020.3030356.
  11. BYŠKA, Jan, Adam JURČÍK, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ a Jan PALEČEK. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. In Stefan Canzar, Francisca Rojas Ringeling. Protein-Protein Interaction Networks. 1. vyd. New York, NY: Humana, 2020. s. 81-94, 14 s. Methods in Molecular Biology, vol. 2074. ISBN 978-1-4939-9872-2. doi:10.1007/978-1-4939-9873-9_7.
  12. 2019

  13. BYŠKA, Jan, Thomas TRAUTNER, Sérgio Manuel MARQUES, Jiří DAMBORSKÝ, Barbora KOZLÍKOVÁ a Manuela WALDNER. Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Computer Graphics Forum, Wiley-Blackwell, 2019, roč. 38, č. 3, s. 441-453. ISSN 0167-7055. doi:10.1111/cgf.13701.
  14. VONÁSEK, Vojtěch, Robert PĚNIČKA a Barbora KOZLÍKOVÁ. Computing multiple guiding paths for sampling-based motion planning. In ICAR - 19th International Conference on Advanced Robotics. Proceedings of the 19th International Conference on Advanced Robotics, ICAR 2019. Belo Horizonte, Brazil: Neuveden, 2019. s. 374-381, 8 s. ISBN 978-1-72812-467-4. doi:10.1109/ICAR46387.2019.8981589.
  15. FURMANOVÁ, Katarína, Barbora KOZLÍKOVÁ, Vojtěch VONÁSEK a Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Data. In Kozlíková, Barbora and Linsen, Lars and Vázquez, Pere-Pau and Lawonn, Kai and Raidou, Renata Georgia. Eurographics Workshop on Visual Computing for Biology and Medicine. Brno: The Eurographics Association, 2019. s. 113-122, 10 s. ISBN 978-3-03868-081-9. doi:10.2312/vcbm.20191238.
  16. KOUŘIL, David, Ladislav ČMOLÍK, Barbora KOZLÍKOVÁ, Hsiang-Yun WU, Graham JOHNSON, David S. GOODSELL, Arthur OLSON, Eduard M. GROELLER a Ivan VIOLA. Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Transactions on Visualization and Computer Graphics, 2019, roč. 25, č. 1, s. 977-986. ISSN 1077-2626. doi:10.1109/TVCG.2018.2864491.
  17. MIAO, Haichao, Tobias KLEIN, David KOUŘIL, Peter MINDEK, Karsten SCHATZ, Eduard M. GRÖLLER, Barbora KOZLÍKOVÁ, Tobias ISENBERG a Ivan VIOLA. Multiscale Molecular Visualization. Journal of Molecular Biology, 2019, roč. 431, č. 6, s. 1049-1070. ISSN 0022-2836. doi:10.1016/j.jmb.2018.09.004.
  18. VONÁSEK, Vojtěch, Adam JURČÍK, Katarína FURMANOVÁ a Barbora KOZLÍKOVÁ. Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. Journal of Intelligent & Robotic Systems, 2019, roč. 93, 3-4, s. 763-785. ISSN 0921-0296. doi:10.1007/s10846-018-0877-6.
  19. JURČÍK, Adam, Katarína FURMANOVÁ, Jan BYŠKA, Vojtěch VONÁSEK, Ondřej VÁVRA, Pavol ULBRICH, Helwig HAUSER a Barbora KOZLÍKOVÁ. Visual Analysis of Ligand Trajectories in Molecular Dynamics. In IEEE Pacific Visualization Symposium 2019. Bangkok, Thailand: IEEE, 2019. s. 212-221, 10 s. ISBN 978-1-5386-9226-4. doi:10.1109/PacificVis.2019.00032.
  20. DURAN, David, Pedro HERMOSILLA, Timo ROPINSKI, Barbora KOZLÍKOVÁ, Álvar VINACUA a Pere-Pau VAZQUEZ. Visualization of Large Molecular Trajectories. IEEE Transactions on Visualization and Computer Graphics, 2019, roč. 25, č. 1, s. 987-996. ISSN 1077-2626. doi:10.1109/TVCG.2018.2864851.
  21. 2018

  22. JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ a Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics, 2018, roč. 34, č. 20, s. 3586-3588. ISSN 1367-4803. doi:10.1093/bioinformatics/bty386.
  23. BREZOVSKÝ, Jan, Barbora KOZLÍKOVÁ a Jiří DAMBORSKÝ. Computational Analysis of Protein Tunnels and Channels. In Bornscheuer U., Höhne M.. Protein Engineering. Methods in Molecular Biology. New York, NY: Humana Press, 2018. s. 25-42, 18 s. 1685. ISBN 978-1-4939-7364-4. doi:10.1007/978-1-4939-7366-8_3.
  24. FURMANOVÁ, Katarína, Jan BYŠKA, Eduard M. GRÖLLER, Ivan VIOLA, Jan PALEČEK a Barbora KOZLÍKOVÁ. COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions. BMC Bioinformatics, 2018, roč. 19, APR, s. 1-17. ISSN 1471-2105. doi:10.1186/s12859-018-2113-6.
  25. KLEIN, Tobias, Ludovic AUTIN, Barbora KOZLÍKOVÁ, David S. GOODSELL, Arthur OLSON, Eduard M. GRÖLLER a Ivan VIOLA. Instant Construction and Visualization of Crowded Biological Environments. IEEE Transactions on Visualization and Computer Graphics, 2018, roč. 24, č. 1, s. 862-872. ISSN 1077-2626. doi:10.1109/TVCG.2017.2744258.
  26. 2017

  27. FURMANOVÁ, Katarína, Petra URBANOVÁ a Barbora KOZLÍKOVÁ. AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology. In Vítezslav Beran, Pavel Zemcík, Ivan Viola, Jirí Bittner, Jaroslav Rozman. Proceedings of the 33rd Spring Conference on Computer Graphics. Brno, Czech Republic: Brno University of Technology, 2017. s. 171-179, 9 s. ISBN 978-1-4503-5107-2. doi:10.1145/3154353.3154363.
  28. KOCINCOVÁ, Lucia, Miroslava JAREŠOVÁ, Jan BYŠKA, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics, BioMed Central, 2017, roč. 18, č. 23, s. 0-0. ISSN 1471-2105. doi:10.1186/s12859-016-1449-z.
  29. BREZOVSKÝ, Jan, Barbora KOZLÍKOVÁ a Jiří DAMBORSKÝ. Computational Analysis of Protein Tunnels and Channels. In Editors: Bornscheuer, Uwe T., Höhne, Matthias. PROTEIN ENGINEERING. METHODS AND PROTOCOLS. New York: Springer, 2017. s. 25-42, 18 s. ISBN 978-1-4939-7366-8.
  30. CHALÁS, Igor, Petra URBANOVÁ, Vojtěch JUŘÍK, Zuzana FERKOVÁ, Marie JANDOVÁ, Jiří SOCHOR a Barbora KOZLÍKOVÁ. Generating various composite human faces from real 3D facial images. The Visual Computer, Springer-Verlag, 2017, roč. 33, č. 4, s. 443-458. ISSN 0178-2789. doi:10.1007/s00371-016-1277-1.
  31. FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics, BioMed Central, 2017, roč. 18, č. 22, s. 1-16. ISSN 1471-2105. doi:10.1186/s12859-016-1448-0.
  32. MALZAHN, Jan, Barbora KOZLÍKOVÁ a Timo ROPINSKI. Protein Tunnel Reprojection for Physico-Chemical Property Analysis. In S. Bruckner, A. Hennemuth, and B. Kainz. Eurographics Workshop on Visual Computing for Biology and Medicine. Bremen, Germany: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017. s. nestránkováno, 10 s. ISBN 978-3-03868-036-9.
  33. VONÁSEK, Vojtěch a Barbora KOZLÍKOVÁ. Tunnel detection in protein structures using sampling-based motion planning. In Krzysztof Kozłowski. Robot Motion and Control (RoMoCo), 2017 11th International Workshop on. Wasowo, Poland: IEEE, 2017. s. 185-192, 8 s. ISBN 978-1-5386-3926-9. doi:10.1109/RoMoCo.2017.8003911.
  34. KOZLÍKOVÁ, Barbora, Michael KRONE, Martin FALK, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK a Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art Revisited. Computer Graphics Forum, Wiley-Blackwell, 2017, roč. 36, č. 8, s. 178-204. ISSN 0167-7055. doi:10.1111/cgf.13072.
  35. VAD, Viktor, Jan BYŠKA, Adam JURČÍK, Ivan VIOLA, Eduard M. GRÖLLER, Helwig HAUSER, Sérgio Manuel MARQUES, Jiří DAMBORSKÝ a Barbora KOZLÍKOVÁ. Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. In S. Bruckner, A. Hennemuth, and B. Kainz. Eurographics Workshop on Visual Computing for Biology and Medicine. Bremen, Germany: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017. s. 33-42, 10 s. ISBN 978-3-03868-036-9.
  36. 2016

  37. JURČÍK, Adam, Julius PARULEK, Jiří SOCHOR a Barbora KOZLÍKOVÁ. Accelerated Visualization of Transparent Molecular Surfaces in Molecular Dynamics. In IEEE Pacific Visualization Symposium 2016. Taipei, Taiwan: IEEE, 2016. s. 112-119, 8 s. ISBN 978-1-5090-1451-4. doi:10.1109/PACIFICVIS.2016.7465258.
  38. BYŠKA, Jan, Mathieu Le MUZIC, Eduard GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics, IEEE, 2016, roč. 22, č. 1, s. 747-756. ISSN 1077-2626. doi:10.1109/TVCG.2015.2467434.
  39. VONÁSEK, Vojtěch a Barbora KOZLÍKOVÁ. Application of Sampling-based Path Planning for Tunnel Detection in Dynamic Protein Structures. In MMAR: 21st International Conference on Methods and Models in Automation and Robotics. Poland: IEEE, 2016. s. 1010-1015, 6 s. ISBN 978-1-5090-1866-6. doi:10.1109/MMAR.2016.7575276.
  40. PAVELKA, Antonín, Eva ŠEBESTOVÁ, Barbora KOZLÍKOVÁ, Jan BREZOVSKÝ, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE Computer Society, 2016, roč. 13, č. 3, s. 505 - 517. ISSN 1545-5963. doi:10.1109/TCBB.2015.2459680.
  41. PALEČEK, Jan, Stephan GRUBER, Lucie VONDROVÁ, Marek ADAMUS, Kateřina ZÁBRADY, Lenka JURČIŠINOVÁ, Saskia N van der CRABBEN, Marije P HENNUS, Grant MCGREGOR, Deborah I RITTER, Alan R LEHMANN, Antony W OLIVER, Barbora KOZLÍKOVÁ, Sharon E PLON, Johanne M MURRAY a Gijs van HAAFTEN. Evolution and functions of SMC complexes: new SMC5/6 insights. In Central European Genome Stability and Damage Meeting. 2016.
  42. VONDROVÁ, Lucie, Matej FABIŠIK, Matej NOCIAR, Barbora KOZLÍKOVÁ a Jan PALEČEK. Mapping of Smc6-Nse3 and Smc6-Nse4 interactions within the S.pombe Smc5/6 complex. In Integrative modelling of biomolecular interactions. 2016.
  43. KOLESÁR, Ivan, Jan BYŠKA, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. In Stefan Bruckner and Bernhard Preim and Anna Vilanova and Helwig Hauser and Anja Hennemuth and Arvid Lundervold. EG VCBM 2016 Eurographics Workshop on Visual Computing for Biology and Medicine. Bergen: The Eurographics Association, 2016. s. nestránkováno, 10 s. ISBN 978-3-03868-010-9. doi:10.2312/vcbm.20161265.
  44. KRONE, Michael, Barbora KOZLÍKOVÁ, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Julius PARULEK, Hans-Christian HEGE a Ivan VIOLA. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, The Eurographics Association and John Wiley & Sons Ltd., 2016, roč. 35, č. 3, s. 527-551. ISSN 0167-7055. doi:10.1111/cgf.12928.
  45. JUŘÍK, Vojtěch, Čeněk ŠAŠINKA, Kateřina ŠPRIŇAROVÁ, Lukáš HERMAN, Zbyněk ŠTĚRBA, Zdeněk STACHOŇ, Jiří CHMELÍK a Barbora KOZLÍKOVÁ. Vliv formy 3D zobrazení geografické informace na její kognitivní zpracování. In Farkaš, Igor; Takáč, Martin; Rybár, Ján; Kelemen, Jozef. Kognicia a umelý život XV, 2015. Bratislava: Univerzita Komenského v Bratislave, 2016. s. 61-66, 6 s. ISBN 978-80-223-3875-2.
  46. SOCHOR, Jiří a Barbora KOZLÍKOVÁ. Výzkum alternativního řešení ovládacího panelu pro monitorovací systémy sítě pomocí infografiky. Brno: Invea/Flowmon Networks, a.s., 2016. 10 s.
  47. 2015

  48. CHALÁS, Igor, Petra URBANOVÁ, Mikoláš JURDA, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ a Jiří SOCHOR. FIDENTIS Analyst 1.3.2. 2015.
  49. CHALÁS, Igor, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Jiří SOCHOR a Barbora KOZLÍKOVÁ. Generation of variable human faces from 3D scan dataset. In In Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications. Skovde, Sweden: IEEE Computer Society, 2015. s. 38-45, 8 s. ISBN 978-1-4799-8102-1. doi:10.1109/VS-GAMES.2015.7295777.
  50. URBANOVÁ, Petra, Igor CHALÁS a Barbora KOZLÍKOVÁ. How accurate is 3D facial morphology for personal identication? In Proceedings of the 67th AnnualcScientic Meeting of the American Academy of Forensic Sciences. 2015.
  51. ŠPRIŇAROVÁ, Kateřina, Vojtěch JUŘÍK, Čeněk ŠAŠINKA, Lukáš HERMAN, Zbyněk ŠTĚRBA, Zdeněk STACHOŇ, Jiří CHMELÍK a Barbora KOZLÍKOVÁ. Human-computer Interaction in Real 3D and Pseudo-3D Cartographic Visualization: A Comparative Study. In Claudia Robbi Sluter, Carla Bernadete Madureira Cruz, Paulo Márcio Leal de Menezes. Cartography - Maps Connecting the World: 27th International Cartographic Conference 2015 - ICC2015. 1st. ed. Švýcarsko: Springer International Publishing, 2015. s. 59-73, 15 s. ISBN 978-3-319-17737-3. doi:10.1007/978-3-319-17738-0_5.
  52. BYŠKA, Jan, Adam JURČÍK, Eduard M. GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Computer Graphics Forum, Wiley-Blackwell, 2015, roč. 34, č. 3, s. 1-10. ISSN 0167-7055. doi:10.1111/cgf.12612.
  53. HUMPOLÍČEK, Pavel, Barbora KOZLÍKOVÁ a Jiří CHMELÍK. NEWRON – terapeutický software k volnému využití. In PsychoLogOn. Brno: Psychologický ústav Filozofické fakulty Masarykovy univerzity, 2015. s. 23-27, 5 s. ISSN 1805-7160.
  54. HUMPOLÍČEK, Pavel, Barbora KOZLÍKOVÁ a Jiří CHMELÍK. NEWRON – Therapeutic Software for Free usage. Annales psychologici, Brno: Masarykova univerzita, 2015, roč. 2 (16), č. 1, s. 20-27. ISSN 2336-4939.
  55. BYŠKA, Jan, Ivana KOLINGEROVÁ, Barbora KOZLÍKOVÁ a Jiří SOCHOR. Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. 31st Proceedings of Spring Conference on Computer Graphics. Bratislava, Slovakia: Comenius University, 2015. s. 101-108, 8 s. ISBN 978-1-4503-3693-2. doi:10.1145/2788539.2788550.
  56. JURČÍK, Adam, Jan BYŠKA, Jiří SOCHOR a Barbora KOZLÍKOVÁ. Visibility-Based Approach to Surface Detection of Tunnels in Proteins. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. 31st Proceedings of Spring Conference on Computer Graphics. Bratislava, Slovakia: Comenius University, 2015. s. 85-92, 8 s. ISBN 978-1-4503-3693-2. doi:10.1145/2788539.2788548.
  57. KOZLÍKOVÁ, Barbora, Michael KRONE, Norbert LINDOW, Martin FALK, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK a Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art. In R. Borgo and F. Ganovelli and I. Viola. Eurographics Conference on Visualization (EuroVis) - STARs. Neuveden: The Eurographics Association, 2015. s. 61-81, 21 s. ISBN 978-3-905674-99-6. doi:10.2312/eurovisstar.20151112.
  58. KOZLÍKOVÁ, Barbora a Jiří SOCHOR. Vývoj nových léčiv v počítači. Vesmír, Vesmír s.r.o., 2015, roč. 2015, č. 9, s. 504-506. ISSN 0042-4544.
  59. 2014

  60. KOZLÍKOVÁ, Barbora. Aktuální stav v oblasti analýzy a vizualizace proteinových struktur. In přednáška na Katedře informatiky a výpočetní techniky ZČU Plzeň. 2014.
  61. KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MAŇÁK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ a Jiří SOCHOR. Caver Analyst 1.0. 2014.
  62. KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MANAK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ a Jiří SOCHOR. CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics, Oxford University Press, 2014, roč. 30, č. 18, s. 2684-2685. ISSN 1367-4803. doi:10.1093/bioinformatics/btu364.
  63. PITNER, Tomáš, Renate MOTSCHNIG, Barbora KOZLÍKOVÁ, Jaroslav ŠKRABÁLEK, Lucie PEKÁRKOVÁ, Jiří KOLÁŘ, Martin NOVÁK, Nino TOMASCHEK, Edith HAMMER, David HASELBERGER, Christina BÖHM a Bernhard STANDL. Constructive Communication in International Teams: An Experience-Based Guide. 1. vyd. Münster: WAXMANN Verlag GmbH, 2014. 248 s. ISBN 978-3-8309-3025-9.
  64. STRNAD, Ondřej, Barbora KOZLÍKOVÁ a Jiří SOCHOR. Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. In Julio Saez-Rodriguez. Advances in Intelligent Systems and Computing. Switzerland: Springer International Publishing, 2014. s. 73-80, 8 s. ISBN 978-3-319-07580-8. doi:10.1007/978-3-319-07581-5_9.
  65. CHALÁS, Igor, Petra URBANOVÁ, Zuzana KOTULANOVÁ, Marie JANDOVÁ, Miroslav KRÁLÍK, Barbora KOZLÍKOVÁ a Jiří SOCHOR. Forensic 3D facial identication software (FIDENTIS). In Proceedings of the 20th World Meeting of the International Association of Forensic Sciences,. 2014.
  66. STRNAD, Ondřej, Vilém ŠUSTR, Barbora KOZLÍKOVÁ a Jiří SOCHOR. Geometrical Detection of Pathways in Protein Structures Leading Among More Binding Sites. In Hesham H. Ali. BIOTECHNO 2014 : The Sixth International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies. Chamonix/France: IARIA XPS Press, 2014. s. 93-98, 6 s. ISBN 978-1-61208-335-3.
  67. NEWRON 0.97 (software)
    CHMELÍK, Jiří, Barbora KOZLÍKOVÁ, Pavel HUMPOLÍČEK, Milan DOLEŽAL, Antonín HOJNÝ, Miroslava JAREŠOVÁ, Ján BELLA, Michal HROŠ, Pavol ULBRICH, Helena LUKÁŠOVÁ a Tomáš POUZAR. NEWRON 0.97. 2014.
  68. HERMAN, Lukáš, Zdeněk STACHOŇ, Zbyněk ŠTĚRBA, Čeněk ŠAŠINKA, Kateřina ŠPRIŇAROVÁ, Vojtěch JUŘÍK, Jiří CHMELÍK, Barbora KOZLÍKOVÁ a Rastislav TISOVČÍK. Role uživatelského rozhraní při práci s 3D prostorovými daty. In Sborník abstraktù příspěvků ze semináře Geomatika v projektech 2014. 2014. ISBN 978-80-263-0796-9.
  69. CHALÁS, Igor, Zuzana FERKOVÁ, Petra URBANOVÁ, Barbora KOZLÍKOVÁ, Zuzana KOTULANOVÁ a Jiří SOCHOR. Surface-based visualization on human face variation. In Ivan Viola, Katja Buhler, Timo Ropinski. Poster Session Presented at the Eurographics Workshop on Visual Computing for Biology and Medicine. 1st. Postfach, Germany: Eurographics Association, 2014. ISBN 978-3-905674-62-0.
  70. KOZLÍKOVÁ, Barbora, Adam JURČÍK, Jan BYŠKA, Ondřej STRNAD a Jiří SOCHOR. Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. In Dieter W. Fellner, Werner Hansmann, Werner Purgathofer, Francois Sillion. EG VCBM 2014 Eurographics Workshop on Visual Computing for Biology and Medicine. Postfach, Germany: Eurographics Association, 2014. s. 97-106, 10 s. ISBN 978-3-905674-62-0.
  71. 2013

  72. STRNAD, Ondřej, Barbora KOZLÍKOVÁ, Vilém ŠUSTR a Jiří SOCHOR. Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters. International Journal on Advances in Life Sciences, 2013, year 2013, vol. 5, no. 3 & 4, s. 160-170. ISSN 1942-2660.
  73. STRNAD, Ondřej, Vilém ŠUSTR, Barbora KOZLÍKOVÁ a Jiří SOCHOR. Real-time visualization of protein empty space with varying parameters. In Hesham H. Ali, University of Nebraska at Omaha, USA. Proceedings of Biotechno. Lisbon/Portugal: IARIA XPS Press, 2013. s. 65-70, 6 s. ISBN 978-1-61208-260-8.
  74. CHALÁS, Igor, Zuzana KOTULANOVÁ a Barbora KOZLÍKOVÁ. Využití 3D záznamu lidského obličeje pro výuku somatoskopických znaků. In Sborník příspěvků Mezinárodní Masarykovy konference pro doktorandy a mladé vědecké pracovníky 2013. 4. vyd. Hradec Králové: Magnaminitas, 2013. s. 3975-3981, 7 s. ISBN 978-80-87952-00-9.
  75. 2012

  76. CHOVANCOVÁ, Eva, Antonín PAVELKA, Petr BENEŠ, Ondřej STRNAD, Jan BREZOVSKÝ, Barbora KOZLÍKOVÁ, Artur Wiktor GORA, Vilém ŠUSTR, Martin KLVAŇA, Petr MEDEK, Lada BIEDERMANNOVÁ, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Computational Biology, 2012, roč. 8, č. 10, s. "nestránkováno". ISSN 1553-7358. doi:10.1371/journal.pcbi.1002708.
  77. 2011

  78. CAVER 3.0 (software)
    CHOVANCOVÁ, Eva, Antonín PAVELKA, Petr BENEŠ, Ondřej STRNAD, Jan BREZOVSKÝ, Barbora KOZLÍKOVÁ, Artur Wiktor GORA, Vilém ŠUSTR, Martin KLVAŇA, Petr MEDEK, Lada BIEDERMANNOVÁ, Jiří DAMBORSKÝ a Jiří SOCHOR. CAVER 3.0. 2011.
  79. CHOVANCOVÁ, Eva, Petr BENEŠ, Antonín PAVELKA, Petr MEDEK, Jan BREZOVSKÝ, Barbora KOZLÍKOVÁ, Martin KLVAŇA, Vilém ŠUSTR, Lada BIEDERMANNOVÁ, Ondřej STRNAD, Artur Wiktor GORA, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER 3.0: A Tool For Efficient Analysis Of Tunnels In Dynamic Protein Structures. In 3Dsig 2011, Structural Bioinformatics and Computational Biophysics, Vienna. 2011.
  80. KOZLÍKOVÁ, Barbora, Igor ALEKSANDROWICZ a Jiří SOCHOR. Computation and Visualization of Surface of Proteins and their Channels. In IADIS Press. The IADIS Computer Graphics, Visualization, Computer Vision and Image Processing (CGVCVIP) 2011. Neuveden: IADIS Press, 2011. s. 99-106, 8 s. ISBN 978-972-8939-48-9.
  81. KOZLÍKOVÁ, Barbora. Visualization Techniques for Static and Dynamic Protein Molecules and Their Channels. 2011.
  82. 2010

  83. KOZLÍKOVÁ, Barbora, Jiří SOCHOR, Tibor SZABÓ a Matúš ZAMBORSKÝ. CAVER Viewer-new tool enhancing computation and visualization of channels in proteins. In The IADIS Computer Graphics, Visualization, Computer Vision and Image Processing (CGVCVIP) 2010. Neuveden: IADIS Press, 2010. 8 s. ISBN 978-972-8939-22-9.
  84. CAVER 2.1 (software)
    BENEŠ, Petr, Barbora KOZLÍKOVÁ, Ondřej STRNAD, Vilém ŠUSTR, Eva CHOVANCOVÁ, Antonín PAVELKA, Jan BREZOVSKÝ, Tibor SZABÓ, Matúš ZAMBORSKÝ, Jiří SOCHOR, Jiří DAMBORSKÝ a Lada BIEDERMANNOVÁ. CAVER 2.1. 2010.
  85. 2009

  86. ZAMBORSKÝ, Matúš, Tibor SZABÓ a Barbora KOZLÍKOVÁ. Dynamic visualization of protein secondary structures. In Proceedings of the 13th Central European Seminar on Computer Graphics (CESCG 2009). Vienna: Vienna University of Technology, Insitute of Computer Graphics and Algorithms, 2009. s. 147-152, 6 s. ISBN 978-3-9502533-1-3.
  87. 2008

  88. CAVER 2.0 (software)
    MEDEK, Petr, Petr BENEŠ, Barbora KOZLÍKOVÁ, Eva CHOVANCOVÁ, Antonín PAVELKA, Tibor SZABÓ, Matúš ZAMBORSKÝ, Filip ANDRES, Martin KLVAŇA, Jan BREZOVSKÝ, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER 2.0. 2008.
  89. 2007

  90. KOZLÍKOVÁ, Barbora, Filip ANDRES a Jiří SOCHOR. Visualization of Tunnels in Protein Molecules. In Computer graphics, virtual reality, visualisation and interaction in Africa AFRIGRAPH '07. October 2007. Grahamstown, South Africa: ACM, 2007. s. 111-118, 8 s. ISBN 978-1-59593-906-7.
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Zobrazeno: 30. 10. 2020 12:43