Výpis publikací

BENEŠ, Nikola, Luboš BRIM, Ondřej HUVAR, Samuel PASTVA a David ŠAFRÁNEK. Boolean network sketches: a unifying framework for logical model inference. Bioinformatics. 2023, roč. 39, č. 4, s. "btad158", 8 s. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btad158.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA, David ŠAFRÁNEK a Eva ŠMIJÁKOVÁ. Phenotype Control of Partially Specified Boolean Networks. In Jun Pang, Joachim Niehren. Computational Methods in Systems Biology. Luxembourg City, Luxembourg: Springer Cham, 2023, s. 18-35. ISBN 978-3-031-42696-4. Dostupné z: https://dx.doi.org/10.1007/978-3-031-42697-1_2.

BENEŠ, Nikola, Luboš BRIM, Ondřej HUVAR, Samuel PASTVA, David ŠAFRÁNEK a Eva ŠMIJÁKOVÁ. AEON.py: Python library for attractor analysis in asynchronous Boolean networks. BIOINFORMATICS. UK: OXFORD UNIV PRESS, 2022, roč. 38, č. 21, s. 4978-4980. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btac624.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. BDD-Based Algorithm for SCC Decomposition of Edge-Coloured Graphs. Logical Methods in Computer Science. Episciences, 2022, roč. 18, č. 1, s. 1-27. ISSN 1860-5974. Dostupné z: https://dx.doi.org/10.46298/LMCS-18(1:38)2022.

BENEŠ, Nikola, Luboš BRIM, Jakub KADLECAJ, Samuel PASTVA a David ŠAFRÁNEK. Exploring attractor bifurcations in Boolean networks. BMC Bioinformatics. 2022, roč. 23, č. 173, s. 1-18. ISSN 1471-2105. Dostupné z: https://dx.doi.org/10.1186/s12859-022-04708-9.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Aeon 2021: Bifurcation Decision Trees in Boolean Networks. In Cinquemani et al. International Conference on Computational Methods in Systems Biology (CMSB 2021). Cham: Springer, 2021, s. 230-237. ISBN 978-3-030-85632-8. Dostupné z: https://dx.doi.org/10.1007/978-3-030-85633-5_14.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Computing Bottom SCCs Symbolically Using Transition Guided Reduction. Online. In Alexandra Silva, K. Rustan, M. Leino. Computer Aided Verification - 33rd International Conference, CAV 2021. Neuveden: Springer Nature, 2021, s. 505-528. ISBN 978-3-030-81684-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-81685-8_24.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Symbolic Coloured SCC Decomposition. Online. In Jan Friso Groote, Kim Larsen. Tools and Algorithms for the Construction and Analysis of Systems, 27th International Conference, TACAS 2021. Neuveden: Springer Nature, 2021, s. 64-83. ISBN 978-3-030-72012-4. Dostupné z: https://dx.doi.org/10.1007/978-3-030-72013-1_4.

BENEŠ, Nikola, Luboš BRIM, Jakub KADLECAJ, Samuel PASTVA a David ŠAFRÁNEK. AEON: Attractor Bifurcation Analysis of Parametrised Boolean Networks. In Shuvendu K. Lahiri and Chao Wang. Computer Aided Verification. CAV 2020. LNCS 12224. Cham: Springer, Cham, 2020, s. 569-581. ISBN 978-3-030-53287-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-53288-8_28.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Digital Bifurcation Analysis of Internet Congestion Control Protocols. International Journal of Bifurcation and Chaos. 2020, roč. 30, č. 13, s. 2030038-2030055. ISSN 0218-1274. Dostupné z: https://dx.doi.org/10.1142/S0218127420300384.

BENEŠ, Nikola, Uli FAHRENBERG, Jan KŘETÍNSKÝ, Axel LEGAY a Louis-Marie TRAONOUEZ. Logical vs. behavioural specifications. Information and computation. San Diego: Academic Press Inc Elsevier Science, 2020, roč. 271, č. 104487, s. 1-24. ISSN 0890-5401. Dostupné z: https://dx.doi.org/10.1016/j.ic.2019.104487.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Parallel parameter synthesis algorithm for hybrid CTL. Science of Computer Programming. 2020, roč. 185, č. 102321, s. 1-19. ISSN 0167-6423. Dostupné z: https://dx.doi.org/10.1016/j.scico.2019.102321.

BENEŠ, Nikola, Luboš BRIM, Martin GELETKA, Samuel PASTVA a David ŠAFRÁNEK. Accelerating Parameter Synthesis Using Semi-algebraic Constraints. Online. In Ahrendt, Wolfgang and Tapia Tarifa, Silvia Lizeth. Integrated Formal Methods. LNCS 11918. Cham: Springer International Publishing, 2019, s. 27-45. ISBN 978-3-030-34967-7. Dostupné z: https://dx.doi.org/10.1007/978-3-030-34968-4_2.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Digital Bifurcation Analysis of TCP Dynamics. In Tomáš Vojnar and Lijun Zhang. Tools and Algorithms for the Construction and Analysis of Systems. TACAS 2019. LNCS, volume 11428. Cham: Springer International Publishing, 2019, s. 339-356. ISBN 978-3-030-17464-4. Dostupné z: https://dx.doi.org/10.1007/978-3-030-17465-1_19.

BENEŠ, Nikola, Luboš BRIM, Jana DRAŽANOVÁ, Samuel PASTVA a David ŠAFRÁNEK. Facetal Abstraction for Non-linear Dynamical Systems Based on delta-decidable SMT. In Proceedings of the 22Nd ACM International Conference on Hybrid Systems: Computation and Control. New York, NY, USA: ACM, 2019, s. 99-108. ISBN 978-1-4503-6282-5. Dostupné z: https://dx.doi.org/10.1145/3302504.3311793.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA, Jakub POLÁČEK a David ŠAFRÁNEK. Formal Analysis of Qualitative Long-Term Behaviour in Parametrised Boolean Networks. In Ait Ameur et al. Formal Methods and Software Engineering - 21st International Conference on Formal Engineering Methods, ICFEM 2019, Shenzhen, China, November 5-9, 2019, Proceedings. Heidelberg: Springer, 2019, s. 353-369. ISBN 978-3-030-32408-7. Dostupné z: https://dx.doi.org/10.1007/978-3-030-32409-4_22.

BENEŠ, Nikola, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. Model Checking Approach to the Analysis of Biological Systems. Online. In Pietro Liò, Paolo Zuliani. Automated Reasoning for Systems Biology and Medicine. Cham: Springer, Cham, 2019, s. 3-35. Computational Biology. ISBN 978-3-030-17296-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-17297-8_1.

BENDÍK, Jaroslav, Nikola BENEŠ a Ivana ČERNÁ. Finding Regressions in Projects under Version Control Systems. In Leszek A. Maciaszek and Marten van Sinderen. 13th International Conference on Software Technologies. Proceedings of the 13th Inte. Porto: SciTePress, 2018, s. 186-197. ISBN 978-989-758-320-9. Dostupné z: https://dx.doi.org/10.5220/0006864401860197.

BENEŠ, Nikola, Luboš BRIM, Jan ČERVENÝ, Samuel PASTVA, David ŠAFRÁNEK, Jakub ŠALAGOVIČ a Matej TROJÁK. Fully Automated Attractor Analysis of Cyanobacteria Models. In Marian Barbu, Răzvan Şolea, Adrian Filipescu. 22nd International Conference on System Theory, Control and Computing. Neuveden: IEEE, 2018, s. 354-359. ISBN 978-1-5386-4444-7. Dostupné z: https://dx.doi.org/10.1109/ICSTCC.2018.8540762.

BEZDĚK, Peter, Nikola BENEŠ, Ivana ČERNÁ a Jiří BARNAT. On clock-aware LTL parameter synthesis of timed automata. Journal of Logical and Algebraic Methods in Programming. ELSEVIER SCIENCE INC, 360 PARK AVE SOUTH: Elsevier, 2018, roč. 99, Oct, s. 114-142. ISSN 2352-2208. Dostupné z: https://dx.doi.org/10.1016/j.jlamp.2018.05.004.

DEMKO, Martin, Samuel PASTVA, David ŠAFRÁNEK, Nikola BENEŠ a Luboš BRIM. PITHYA. 2018.

BENDÍK, Jaroslav, Ivana ČERNÁ a Nikola BENEŠ. Recursive Online Enumeration of All Minimal Unsatisfiable Subsets. In Shuvendu Lahiri and Chao Wang. Automated Technology for Verification and Analysis - 16th International Symposium, {ATVA} 2018, Los Angeles, CA, USA, October 7-10, 2018, Proceedings}. Los Angeles: Springer, 2018, s. 143-159. ISBN 978-3-030-01089-8. Dostupné z: https://dx.doi.org/10.1007/978-3-030-01090-4_9.

BRIM, Luboš, Jiří BARNAT, David ŠAFRÁNEK, Nikola BENEŠ, Martin DEMKO, Samuel PASTVA a Matej HAJNAL. Detecting Attractors in Biological Models with Uncertain Parameters. In Jérôme Feret and Heinz Koeppl. Computational Methods in Systems Biology. CMSB 2017. LNCS 10545. Cham: Springer International Publishing, 2017, s. 40-56. ISBN 978-3-319-67470-4. Dostupné z: https://dx.doi.org/10.1007/978-3-319-67471-1_3.

BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Matej HAJNAL, Samuel PASTVA a David ŠAFRÁNEK. Discrete Bifurcation Analysis with Pithya. In Feret J. et al. 15th International Conference on Computational Methods in Systems Biology (CMSB). LNCS 10545. Cham: Springer, 2017, s. 319-320. ISBN 978-3-319-67470-4.

BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, David ŠAFRÁNEK, Samuel PASTVA a Matej HAJNAL. Model Checking Approach to Discrete Bifurcation Analysis. In Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2017.

BRIM, Luboš, David ŠAFRÁNEK, Nikola BENEŠ, Martin DEMKO, Samuel PASTVA a Matej HAJNAL. Parameter Synthesis of Biological Models by Model Checking: A Case Study. In 4th International Synthetic & Systems Biology Summer School. SSBSS 2017. 2017.

BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA a David ŠAFRÁNEK. Pithya: A Parallel Tool for Parameter Synthesis of Piecewise Multi-Affine Dynamical Systems. In Rupak Majumdar and Viktor Kunčak. Computer Aided Verification. CAV 2017. LNCS 10426. Cham: Springer International Publishing, 2017, s. 591-598. ISBN 978-3-319-63386-2. Dostupné z: https://dx.doi.org/10.1007/978-3-319-63387-9_29.

BRIM, Luboš, Nikola BENEŠ, David ŠAFRÁNEK, Martin DEMKO, Samuel PASTVA a Matej HAJNAL. PITHYA: High-Performance Parameter Synthesis for Biological Models. In Intelligent Systems for Molecular Biology and European Conference on Computational Biology. ISMB/ECCB 2017. 2017.

BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA a David ŠAFRÁNEK. A Model Checking Approach to Discrete Bifurcation Analysis. In John S. Fitzgerald et al. Formal Methods. FM 2016. LNCS 9995. Neuveden: Springer International Publishing, 2016, s. 85-101. ISBN 978-3-319-48988-9. Dostupné z: https://dx.doi.org/10.1007/978-3-319-48989-6_6.

BARNAT, Jiří, Petr BAUCH, Nikola BENEŠ, Luboš BRIM, Jan BERAN a Tomáš KRATOCHVÍLA. Analysing Sanity of Requirements for Avionics Systems. Formal Aspects of Computing. 2016, roč. 28, č. 1, s. 45-63. ISSN 0934-5043. Dostupné z: https://dx.doi.org/10.1007/s00165-015-0348-9.

BENDÍK, Jaroslav, Nikola BENEŠ, Jiří BARNAT a Ivana ČERNÁ. Finding Boundary Elements in Ordered Sets with Application to Safety and Requirements Analysis. In Rocco De Nicola, Eva K{\"{u}}hn. Software Engineering and Formal Methods - 14th International Conference, SEFM 2016. Berlin: Lecture Notes in Computer Sciences in Computer Science, 9763, 2016, s. 121-136. ISBN 978-3-319-41590-1. Dostupné z: https://dx.doi.org/10.1007/978-3-319-41591-8_9.

DEMKO, Martin, Nikola BENEŠ, Luboš BRIM, Samuel PASTVA a David ŠAFRÁNEK. High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study. In Ezio Bartocci et al. Computational Methods in Systems Biology. CMSB 2016. LNBI 9859. Neuveden: Springer International Publishing, 2016, s. 82-97. ISBN 978-3-319-45176-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-45177-0_6.

BEZDĚK, Peter, Nikola BENEŠ, Jiří BARNAT a Ivana ČERNÁ. LTL Parameter Synthesis of Parametric Timed Automata. In Rocco De Nicola, Eva K{\"{u}}hn. Software Engineering and Formal Methods - 14th International Conference, SEFM 2016. Berlin: Lecture Notes in Computer Sciences in Computer Science, 9763, 2016, s. 172-187. ISBN 978-3-319-41590-1. Dostupné z: https://dx.doi.org/10.1007/978-3-319-41591-8_12.

BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA a David ŠAFRÁNEK. Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-Affine Systems. In Cyrille Artho et al. Automated Technology for Verification and Analysis. ATVA 2016. LNCS 9938. Neuveden: Springer International Publishing, 2016, s. 192-208. ISBN 978-3-319-46519-7. Dostupné z: https://dx.doi.org/10.1007/978-3-319-46520-3_13.

BENDÍK, Jaroslav, Nikola BENEŠ, Ivana ČERNÁ a Jiří BARNAT. Tunable Online MUS/MSS Enumeration. In Akash Lal, S. Akshay, Saket Saurabh, Sandeep Sen. Foundations of Software Technology and Theoretical Computer Science - 36th International Conference, FSTTCS 2016. 65. vyd. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2016, s. 661-673. ISBN 978-3-95977-027-9. Dostupné z: https://dx.doi.org/10.4230/LIPIcs.FSTTCS.2016.50.

BENEŠ, Nikola, Przemysław DACA, Thomas A. HENZINGER, Jan KŘETÍNSKÝ a Dejan NIČKOVIĆ. Complete Composition Operators for IOCO-Testing Theory. Online. In Proceedings of the 18th International ACM SIGSOFT Symposium on Component-Based Software Engineering. New York, NY, USA: ACM, 2015, s. 101-110. ISBN 978-1-4503-3471-6. Dostupné z: https://dx.doi.org/10.1145/2737166.2737175.

BENEŠ, Nikola, Peter BEZDĚK, Kim G. LARSEN a Jiří SRBA. Language Emptiness of Continuous-Time Parametric Timed Automata. In Magnús M. Halldórsson, Kazuo Iwama, Naoki Kobayashi, Bettina Speckmann. Automata, Languages, and Programming. Neuveden: Springer Berlin Heidelberg, 2015, s. 69-81. ISBN 978-3-662-47665-9. Dostupné z: https://dx.doi.org/10.1007/978-3-662-47666-6_6.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN, Mikael H. MOLLER, Salomon SICKERT a Jiří SRBA. Refinement checking on parametric modal transition systems. Acta Informatica. Springer, 2015, roč. 52, 2-3, s. 269-297. ISSN 0001-5903. Dostupné z: https://dx.doi.org/10.1007/s00236-015-0215-4.

BEZDĚK, Peter, Nikola BENEŠ, Jiří BARNAT a Ivana ČERNÁ. LTL Model Checking of Parametric Timed Automata. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. MEMICS 2014. Brno, Czech Republic: NOVPRESS, 2014, s. 28-39. ISBN 978-80-214-5022-6.

BEZDĚK, Peter, Nikola BENEŠ, Vojtěch HAVEL, Jiří BARNAT a Ivana ČERNÁ. On Clock-Aware LTL Properties of Timed Automata. In Gabriel Ciobanu, Dominique Méry. Theoretical Aspects of Computing – ICTAC 2014. Neuveden: Springer International Publishing, 2014, s. 43-60. ISBN 978-3-319-10881-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-10882-7_4.

BARNAT, Jiří, Nikola BENEŠ, Tomáš BUREŠ, Ivana ČERNÁ, Tomáš KEZNIKL a František PLÁŠIL. Towards Verification of Ensemble Based Component Systems. In José Luiz Fiadeiro, Zhiming Liu, Jinyun Xue. Formal Aspects of Component Software. Neuveden: Springer International Publishing, 2014, s. 41-60. ISBN 978-3-319-07601-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-07602-7_5.

BARNAT, Jiří, Nikola BENEŠ, Ivana ČERNÁ a Zuzana PETRUCHOVÁ. DCCL: Verification of Component Systems with Ensembles. In CBSE '13 Proceedings of the 16th International ACM Sigsoft symposium on Component-based software engineering. New York, NY, USA: ACM, 2013, s. 43-52. ISBN 978-1-4503-2122-8. Dostupné z: https://dx.doi.org/10.1145/2465449.2465453.

BENEŠ, Nikola, Benoit DELAHAYE, Uli FAHRENBERG, Jan KŘETÍNSKÝ a Axel LEGAY. Hennessy-Milner Logic with Greatest Fixed Points as a Complete Behavioural Specification Theory. In CONCUR 2013 - Concurrency Theory - 24th International Conference. Heidelberg Dordrecht London New York: Springer, 2013, s. 76-90. ISBN 978-3-642-40183-1. Dostupné z: https://dx.doi.org/10.1007/978-3-642-40184-8_7.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN, Mikael H. MOLLER a Jiří SRBA. Dual-Priced Modal Transition Systems with Time Durations. In LPAR-18 - Logic for Programming, Artificial Intelligence, and Reasoning: 18th International Conference. Heidelberg Dordrecht London New York: Springer, 2012, s. 122-137. ISBN 978-3-642-28716-9. Dostupné z: https://dx.doi.org/10.1007/978-3-642-28717-6_12.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN a Jiří SRBA. EXPTIME-Completeness of Thorough Refinement on Modal Transition Systems. Information and Computation. Elsevier, 2012, roč. 218, September, s. 54-68. ISSN 0890-5401. Dostupné z: https://dx.doi.org/10.1016/j.ic.2012.08.001.

BENEŠ, Nikola, Ivana ČERNÁ a Filip ŠTEFAŇÁK. Factorization for Component-Interaction Automata. In SOFSEM 2012: Theory and Practice of Computer Science. Berlin Heidelberg: Springer Berlin Heidelberg, 2012, s. 554-565. ISBN 978-3-642-27659-0. Dostupné z: https://dx.doi.org/10.1007/978-3-642-27660-6_45.

BENEŠ, Nikola a Jan KŘETÍNSKÝ. Modal Process Rewrite Systems. In Theoretical Aspects of Computing - ICTAC 2012. Berlin Heidelberg: Springer, 2012, s. 120-135. ISBN 978-3-642-32942-5. Dostupné z: https://dx.doi.org/10.1007/978-3-642-32943-2_9.

BENEŠ, Nikola, Barbora BÜHNOVÁ, Ivana ČERNÁ a Radek OŠLEJŠEK. Reliability analysis in component-based development via probabilistic model checking. In Proceedings of the 15th ACM SIGSOFT symposium on Component Based Software Engineering (CBSE '12). New York, NY, USA: ACM, 2012, s. 83-92. ISBN 978-1-4503-1345-2. Dostupné z: https://dx.doi.org/10.1145/2304736.2304752.

BENEŠ, Nikola, Ivana ČERNÁ a Milan KŘIVÁNEK. CoInDiVinE: Parallel Distributed Model Checker for Component-Based Systems. Online. In Jiří Barnat and Keijo Heljanko. Proceedings 10th International Workshop on Parallel and Distributed Methods in verifiCation. Neuveden: Open Publishing Association, 2011, s. 63-67. ISSN 2075-2180. Dostupné z: https://dx.doi.org/10.4204/EPTCS.72.

BENEŠ, Nikola, Ivana ČERNÁ a Jan KŘETÍNSKÝ. Modal Transition Systems: Composition and LTL Model Checking. In ATVA 2011 - Automated Technology for Verification and Analysis: 9th International Symposium. Heidelberg Dordrecht London New York: Springer, 2011, s. 228-242. ISBN 978-3-642-24371-4.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN, Mikael H. MOLLER a Jiří SRBA. Parametric Modal Transition Systems. In ATVA 2011 - Automated Technology for Verification and Analysis: 9th International Symposium. Heidelberg Dordrecht London New York: Springer, 2011, s. 275-289. ISBN 978-3-642-24371-4.

BENEŠ, Nikola, Luboš BRIM, Barbora BÜHNOVÁ, Ivana ČERNÁ, Jiří SOCHOR a Pavlína MORAVCOVÁ VAŘEKOVÁ. Partial Order Reduction for State/Event LTL with Application to Component-Interaction Automata. Science of Computer Programming. Elsevier, 2011, roč. 76, č. 10, s. 877-890. ISSN 0167-6423. Dostupné z: https://dx.doi.org/10.1016/j.scico.2010.02.008.

BENEŠ, Nikola a Jan KŘETÍNSKÝ. Process Algebra for Modal Transition Systemses. Online. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 9--18. ISBN 978-3-939897-22-4.

BENEŠ, Nikola, Ivana ČERNÁ a Milan KŘIVÁNEK. CoIn-DiVinE. 2010.

BENEŠ, Nikola a Jan KŘETÍNSKÝ. Process Algebra for Modal Transition Systemses. In MEMICS 2010. Brno: NOVPRESS s.r.o., 2010, s. 20-27. ISBN 978-80-87342-10-7.

BENEŠ, Nikola, Barbora BÜHNOVÁ, Ivana ČERNÁ a Milan KŘIVÁNEK. CoIn Tool Set. 2009.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN a Jiří SRBA. Checking Thorough Refinement on Modal Transition Systems Is EXPTIME-Complete. In Theoretical Aspects of Computing - ICTAC 2009, 6th International Colloquium, Kuala Lumpur, Malaysia, August 16-20, 2009. Proceedings. Heidelberg: Springer-Verlag, 2009, s. 112-126. ISBN 978-3-642-03465-7. Dostupné z: https://dx.doi.org/10.1007/978-3-642-03466-4_7.

BENEŠ, Nikola, Jan KŘETÍNSKÝ, Kim G. LARSEN a Jiří SRBA. On Determinism in Modal Transition Systems. Theoretical Computer Science. Elsevier, 2009, roč. 410/2009, č. 41, s. 4026-4043. ISSN 0304-3975.

BENEŠ, Nikola, Luboš BRIM, Ivana ČERNÁ, Jiří SOCHOR, Pavlína VAŘEKOVÁ a Barbora ZIMMEROVÁ. Partial Order Reduction for State/Event LTL. In Proceedings of the International Conference on Integrated Formal Methods (IFM'09). Berlin / Heidelberg, Germany: Springer Verlag, 2009, s. 307-321. ISBN 978-3-642-00254-0. Dostupné z: https://dx.doi.org/10.1007/978-3-642-00255-7_21.

BENEŠ, Nikola, Milan KŘIVÁNEK a Filip ŠTEFAŇÁK. Space Effective Model Checking for Component-Interaction Automata. In Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'09). Dagstuhl, Německo: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Německo, 2009, 8 s. ISBN 978-3-939897-15-6.

BENEŠ, Nikola, Ivana ČERNÁ, Jiří SOCHOR, Pavlína VAŘEKOVÁ a Barbora ZIMMEROVÁ. A Case Study in Parallel Verification of Component-Based Systems. In Pre-proceedings of the Workshop on Parallel and Distributed Methods in verifiCation (PDMC'08). Budapest, Hungary: ETAPS, 2008, s. 35-51. ISSN 1571-0661.

BENEŠ, Nikola, Ivana ČERNÁ, Jiří SOCHOR, Pavlína MORAVCOVÁ VAŘEKOVÁ a Barbora BÜHNOVÁ. A Case Study in Parallel Verification of Component-Based Systems. Electronic Notes in Theoretical Computer Science. Neuveden: Elsevier, 2008, roč. 220, č. 2, s. 67-83, 16 s. ISSN 1571-0661.

ZIMMEROVÁ, Barbora, Pavlína VAŘEKOVÁ, Nikola BENEŠ, Ivana ČERNÁ, Luboš BRIM a Jiří SOCHOR. Component-Interaction Automata Approach (CoIn). In The Common Component Modeling Example: Comparing Software Component Models. Berlin / Heidelberg, Germany: Springer Verlag, 2008, s. 146-176. LNCS 5153. ISBN 978-3-540-85288-9.

BENEŠ, Nikola, Luboš BRIM, Ivana ČERNÁ, Jiří SOCHOR, Pavlína VAŘEKOVÁ a Barbora ZIMMEROVÁ. Partial Order Reduction for State/Event LTL. Brno, Czech Republic: Faculty of Informatics, Masaryk University, 2008, 21 s. Technical report FIMU-RS-2008-07.

BENEŠ, Nikola, Luboš BRIM, Ivana ČERNÁ, Jiří SOCHOR, Pavlína VAŘEKOVÁ a Barbora ZIMMEROVÁ. The CoIn Tool: Modelling and Verification of Interactions in Component-Based Systems. In Pre-proceedings of the International Workshop on Formal Aspects of Component Software (FACS'08). Málaga, Spain: Department of Computer Science, University of Málaga, 2008, s. 221-225. ISSN 1571-0661.