Publication Records

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ and Jaroslav KOČA. Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies. In XIII. Setkání biochemiků a molekulárních biologů. Brno: Masarykova Univerzita, 2009, p. 3. ISBN 978-80-210-4830-0.

PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ and Jaroslav KOČA. TRITON 4 : software for ligand-binding protein engineering. 2009.

HOLUB, Peter, Martina PAVLOVÁ, Martin KLVAŇA, Zbyněk PROKOP, Radka CHALOUPKOVÁ, Aaron OAKLEY, M. TSUDA, Yuji NAGATA and Jiří DAMBORSKÝ. Protein Engineering of Haloalkane Dehalogenases: Towards the Change of Reaction Mechanism. 2008.

PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ and Jaroslav KOČA. TRITON: a graphical tool for ligand-binding protein engineering. Bioinformatics. Oxford University Press, 2008, vol. 24, No 17, p. 1955-1956. ISSN 1367-4803.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Edward P. MITCHELL, Anne IMBERTY and Michaela WIMMEROVÁ. Engineering of PA-IIL lectin from Pseudomonas aeruginosa - Unravelling the role of the specificity loop for sugar preference (ngineering of PA-IIL lectin from Pseudomonas aeruginosa - Unravelling the role of the specificity loop for sugar preference). BMC Structural Biology. 2007, vol. 7, No 36, p. 1-13. ISSN 1472-6807.

MONINCOVÁ, Marta, Yuji NAGATA, Radka CHALOUPKOVÁ, Zbyněk PROKOP, Andrea FOŘTOVÁ, Martina PAVLOVÁ, Masataka TSUDA and Jiří DAMBORSKÝ. Protein engineering of haloalkane dehalogenase LinB: reconstruction of active site and modification of entrance tunnel. In Book of Abstracts, 10th International Symposium of the Genetics of Industrial Microorganisms. 1st ed. Praha: Institute of Microbiology ASCR, 2006, p. 160-161. ISBN 80-239-7323-1.

PROKOP, Martin, Jiří DAMBORSKY and Jaroslav KOČA. TRITON: graphic software for modelling protein mutants and calculation reaction pathways. In Modelling and Design of Molecular Materials, Program-Book of Abstract. Wroclaw: University of Wroclav, 2004, p. L-28, 1 pp.

BOSMA, Tjibbe, Jiří DAMBORSKÝ, Gerhard STUCKI and Dick JANSSEN. Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene. Applied and Environmental Microbiology. 2002, vol. 68, No 7, p. 3582-3587. ISSN 1098-5336.

OAKLEY, Aaron, Zbyněk PROKOP, Michal BOHÁČ, Jan KMUNÍČEK, Tomáš JEDLIČKA, Marta MONINCOVÁ, Ivana KUTÁ-SMATANOVÁ, Yuji NAGATA, Jiří DAMBORSKÝ and Matthew WILCE. Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product and water mediated inhibition. Biochemistry. 2002, vol. 41, No 15, p. 4847-4855. ISSN 0006-2960.

BOHÁČ, Michal, Yuji NAGATA, Zbyněk PROKOP, Martin PROKOP, Marta MONINCOVÁ, Masataka TSUDA, Jaroslav KOČA and Jiri DAMBORSKÝ. Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis. Biochemistry. 2002, vol. 41, No 48, p. 14272-14280. ISSN 0006-2960.

DAMBORSKY, Jiří, Andrea JESENSKÁ, Zbyněk PROKOP, Jan KMUNÍČEK, Michal BOHÁČ, Martin PROKOP, Jana SÝKOROVÁ, Radka CHALOUPKOVÁ, Martina PAVLOVÁ, Tomáš JEDLIČKA, Marta MONINCOVÁ, Michal STROUHAL, Martina BUDOVÁ, Jaroslav KOČA, Michal OTYEPKA, Yuji NAGATA and Matthew WILCE. Protein engineering of dehalogenating enzymes. In Materials in Structure Chemistry, Biology, Physics and Technology. Praha: Krystalografická společnost, 2002, p. 34. ISSN 1211-5894.

DAMBORSKÝ, Jiří, Martin PROKOP and Jaroslav KOČA. TRITON: graphic software for rational engineering of enzymes. Trends in Biochemical Sciences. 2001, vol. 28, No 1, p. 71-73.