Publication Records

OPÁLENÝ, Filip, Pavol ULBRICH, Joan PLANAS IGLESIAS, Jan BYŠKA, Jan ŠTOURAČ, David BEDNÁŘ, Katarína FURMANOVÁ and Barbora KOZLÍKOVÁ. Visual Support for the Loop Grafting Workflow on Proteins. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2025. ISSN 1077-2626.

GNADLINGER, Florian and Simone KRIGLSTEIN. A proposal for a revised meta-architecture of intelligent tutoring systems to foster explainability and transparency for educators. In Seamless Learning Conference 2024. 2024. Available from: https://dx.doi.org/10.48550/ARXIV.2404.06820.

PAGÁČ, Tomáš, Regina BERNHAUPT and Simone KRIGLSTEIN. A scoping literature review on influencing factors in live-streaming spectatorship experience. ENTERTAINMENT COMPUTING. ENGLAND: ELSEVIER SCI LTD, 2024, vol. 52, No 1, 37 pp. ISSN 1875-9521. Available from: https://dx.doi.org/10.1016/j.entcom.2024.100872.

POPELKA, Stanislav, Michaela VOJTĚCHOVSKÁ, Nicol DOSTÁLOVÁ and Čeněk ŠAŠINKA. Advancing dyslexia intervention with gaze-based interactions in DeveLex software. In 22nd European Conference on Eye Movements. 2024.

LANG, Matěj, Radoslav MRÁZ, Marek TRTÍK, Sergej STOPPEL, Jan BYŠKA and Barbora KOZLÍKOVÁ. Antarstick: Extracting Snow Height From Time-Lapse Photography. COMPUTER GRAPHICS FORUM. England: Wiley, 2024, vol. 43, No 3, p. 1-11. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.15088.

NGUYEN, Quynh, Alexandra WINDISCH and Simone KRIGLSTEIN. Between Two Worlds: Analysing the Effects of Immersive and Non-Immersive Prototyping for Participatory Design. In ACM Designing Interactive Systems Conference (DIS '24). ACM, 2024, p. 2198–2212. Available from: https://dx.doi.org/10.1145/3643834.3660715.

STOKLASA, Roman, Ioannis STATHOPOULOS, Efstratios KARAVASILIS, Efstathios EFSTATHOPOULOS, Marek DOSTÁL, Miloš KEŘKOVSKÝ, Michal KOZUBEK and Luigi SERIO. Brain MRI Screening Tool with Federated Learning. Online. In Proceedings of 2024 IEEE International Symposium on Biomedical Imaging. IEEE, 2024, 5 pp.

POKOJNÁ, Hana. Cartography of Touch: Transformation of touch through anatomical projections. LEONARDO. UNITED STATES: MIT PRESS, 2024, not specif, No 11, p. 25-32. ISSN 0024-094X. Available from: https://dx.doi.org/10.1162/leon_a_02403.

LUX, Filip and Petr MATULA. Cell Tracking based on Integer Linear Programming and Probability Scores. In Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging. Athens: IEEE 21th International Symposium on Biomedical Imaging, 2024, p. 1-5. ISBN 979-8-3503-1334-5. Available from: https://dx.doi.org/10.1109/ISBI56570.2024.10635857.

SMOLNICKÁ, Anna, Břetislav LIPOVÝ, Veronika PAVLIŇÁKOVÁ, Lucy VOJTOVÁ, Jakub HOLOUBEK, Martin FALDYNA, Edita JEKLOVÁ and Irena KOUTNÁ. Cell-mediated multilayered 4th generation biomimetic scaffold for single-step total skin substitute: from laboratory to clinical application. In 23rd Interdisciplinary Meeting of Young Biologists, Biochemists, and Chemists, Milovy, 2024. 2024. ISSN 2336-7210.

ŠAŠINKA, Čeněk, Stanislav POPELKA, Zdeněk STACHOŇ, Alžběta ŠAŠINKOVÁ, David KOŠATKA, Nicol DOSTÁLOVÁ and Kateřina JOCHECOVÁ. Cognition and Artificial Life. 2024.

ŠAŠINKA, Čeněk, Zdeněk STACHOŇ, Stanislav POPELKA, Michal ČERNÝ, Nicol DOSTÁLOVÁ, David KOŠATKA and Alžběta ŠAŠINKOVÁ. Cognition and Artificial Life 2024. Peer-reviewed proceedings. 2024. ISBN 978-80-88123-36-1.

NGUYEN, Quynh, Emma JASPAERT, Markus MURTINGER, Simone KRIGLSTEIN and Manfred TSCHELIGI. CoLEBricks: Co-Designing Virtual Reality Scenarios with Generative Building Blocks. In Proceedings of the 2024 International Conference on Advanced Visual Interfaces (AVI '24). Association for Computing Machinery, 2024. Available from: https://dx.doi.org/10.1145/3656650.3656686.

NEČASOVÁ, Tereza, Daniel MÚČKA and David SVOBODA. COMPYDA: An online tool for verifying the similarity of image datasets. 2024.

NEČASOVÁ, Tereza, Daniel MÚČKA and David SVOBODA. COMPYDA: An online tool for verifying the similarity of image datasets. Online. In 21st IEEE International Symposium on Biomedical Imaging. IEEE, 2024, 4 pp.

WERMINGHAUS, Maika, Florian GNADLINGER, Jutta G RICHTER, Andre SELMANAGIC, Susann THYSON, Dorothee SCHATTON and Thomas KLENZNER. Concept and implementation of an adaptive digital hearing training system for cochlear implant aftercare. HNO. GERMANY: SPRINGER, 2024, 9 pp. ISSN 0017-6192. Available from: https://dx.doi.org/10.1007/s00106-023-01414-7.

ŠTEFÁNIK, Michal, Marek KADLČÍK and Petr SOJKA. Concept-aware Data Construction Improves In-context Learning of Language Models. Online. In Lun-Wei Ku, Andre Martins, Vivek Srikumar. Findings of the Association for Computational Linguistics ACL 2024. Bangkok, Thailand: Association for Computational Linguistics, 2024, p. 12335-12352. ISBN 979-8-89176-099-8.

ŠTEFÁNIK, Michal, Marek KADLČÍK and Petr SOJKA. Concept-aware Data Construction Improves In-context Learning of Language Models. In ICLR 2024 Workshop on Mathematical and Empirical Understanding of Foundation Models. 2024. Available from: https://dx.doi.org/10.48550/arXiv.2403.09703.

KUŤÁK, David, Danielle Kathryn LANGLOIS, Roman ROZIČ, Jan BYŠKA, Haichao MIAO, Simone KRIGLSTEIN and Barbora KOZLÍKOVÁ. Design and evaluation of alphabetic and numeric input methods for virtual reality. Computers & Graphics. Elsevier, 2024. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2024.103955.

PAVLIŇÁKOVÁ, Veronika, Daniel IZSÁK, Břetislav LIPOVÝ, Martin KNOZ, Anna SMOLNICKÁ, Martin FALDYNA, Edita JEKLOVÁ, Irena KOUTNÁ and Lucy VOJTOVÁ. Development of a Multilayered 4th Generation Scaffold for Advanced Total Skin Substitutes. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicíny. 2024. ISBN 978-80-01-07293-6.

ČIMBOROVÁ, Katarína, Vendula PELKOVÁ, Tereza SOURALOVÁ, Naděžda VAŠKOVICOVÁ, Tomáš BÁRTA, Irena KOUTNÁ and Aleš HAMPL. DEVELOPMENT TOWARDS THERAPY OF MACULAR DEGENERATION OF RETINA BY DERIVATIVES OF HUMAN PLURIPOTENT STEM CELLS. In SY-Stem 2024, Vienna. 2024.

ČIMBOROVÁ, Katarína, Vendula PELKOVÁ, Tereza SOURALOVÁ, Naděžda VAŠKOVICOVÁ, Tomáš BÁRTA, Irena KOUTNÁ and Aleš HAMPL. DEVELOPMENT TOWARDS THERAPY OF MACULAR DEGENERATION OF RETINA BY DERIVATIVES OF HUMAN PLURIPOTENT STEM CELLS. In PELKOVÁ, Vendula. XXIII. Interdisciplinary meeting of young life scientists, Milovy. 2024.

ŠVAŘÍČEK, Roman and Nicol DOSTÁLOVÁ. Enhancing Diagnostic Precision in Dyslexia: Introducing the DYSLEX Platform. In The International Council on Education for Teaching (ICET), 65th World Assembly, 2022, Braga, Portugal, 2024. 2024.

SEDMIDUBSKÝ, Jan, Nicol DOSTÁLOVÁ, Roman ŠVAŘÍČEK and Wolf CULEMANN. ETDD70: Eye-Tracking Dataset for Classification of Dyslexia using AI-based Methods. Online. In 17th International Conference on Similarity Search and Applications (SISAP). Springer, 2024, 14 pp.

DOSTÁLOVÁ, Nicol, Roman ŠVAŘÍČEK, Jan SEDMIDUBSKÝ, Wolf CULEMANN, Čeněk ŠAŠINKA, Pavel ZEZULA and Jiří ČENĚK. ETDD70: Eye-Tracking Dyslexia Dataset. 2024.

STEGMÜLLER, Johannes, André GREINER-PETTER, Petr SOJKA, Olaf TESCHKE and Moritz SCHUBOTZ. Examination of the state of the art of mathematical formula search for zbMATHOpen. In Klaus Hulek, Octavio Paniagua Taboada, Olaf Teschke. 90 Years of zbMATH. Berlin: EMS Press, 2024, p. 27-41. ISBN 978-3-98547-073-0. Available from: https://dx.doi.org/10.4171/zbl90/13.

DOSTÁLOVÁ, Nicol, Čeněk ŠAŠINKA and David LACKO. Exploring the Relation between Reading Style and Cognitive Style: an Eye-Tracking Approach. In 22nd Cognition and Artificial Life. 2024.

DOSTÁLOVÁ, Nicol and Roman ŠVAŘÍČEK. Eye movements when reading pseudo-text in dyslexic children: Evidence from eye-tracking (Eye movements when reading pseudo-text in dyslexic children). In 22nd European Conference on Eye Movements. 2024.

JONÁŠ, Martin, Jan STREJČEK, Marek TRTÍK and Lukáš URBAN. Fizzer: New Gray-Box Fuzzer. Online. In Dirk Beyer and Ana Cavalcanti. Fundamental Approaches to Software Engineering - 27th International Conference, FASE 2024, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2024, Luxembourg City, Luxembourg, April 6-11, 2024, Proceedings. Cham (Švýcarsko): Springer, 2024, p. 309-313. ISBN 978-3-031-57258-6. Available from: https://dx.doi.org/10.1007/978-3-031-57259-3_17.

WIESNER, David, Julian SUK, Sven DUMMER, Tereza NEČASOVÁ, Ulman VLADIMÍR, David SVOBODA and Jelmer WOLTERINK. Generative modeling of living cells with SO(3)-equivariant implicit neural representations. Medical Image Analysis. Netherlands: Elsevier, 2024, vol. 2024, No 91, p. 102991-103008. ISSN 1361-8415. Available from: https://dx.doi.org/10.1016/j.media.2023.102991.

EFTIMIU, Nikomidisz Jorgosz and Michal KOZUBEK. Gravitational Cell Detection and Tracking in Fluorescence Microscopy Data (Gravitational cell detection and tracking in fluorescence microscopy data). Online. In IEEE. 24 IEEE International Symposium on Biomedical Imaging (ISBI). Athens, Greece: IEEE, 2024, 5 pp. Available from: https://dx.doi.org/10.1109/ISBI56570.2024.10635151.

JONÁŠ, Martin, Jan STREJČEK, Marek TRTÍK and Lukáš URBAN. Gray-Box Fuzzing via Gradient Descent and Boolean Expression Coverage. Online. In Bernd Finkbeiner and Laura Kovács. Tools and Algorithms for the Construction and Analysis of Systems - 30th International Conference, TACAS 2024, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2024, Luxembourg City, Luxembourg, April 6-11, 2024, Proceedings, Part III. Cham (Švýcarsko): Springer, 2024, p. 90-109. ISBN 978-3-031-57255-5. Available from: https://dx.doi.org/10.1007/978-3-031-57256-2_5.

DLUGOŠOVÁ, Slavomíra, Jana DVOŘÁKOVÁ, Vladimír PROKS and Irena KOUTNÁ. Hyaline Cartilage Tissue Engineering: 3D Culture of Autologous Chondrocytes in Biodegradable Hydrogels. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicína, Lednice, 2024. 2024.

ŠTĚPÁNEK, Adam, David KUŤÁK, Barbora KOZLÍKOVÁ and Jan BYŠKA. Interactive Diagrams for Software Documentation. 2024, 12 pp.

ŠAŠINKA, Čeněk, Nicol DOSTÁLOVÁ, Michaela VOJTĚCHOVSKÁ, Kateřina JOCHECOVÁ, David KOŠATKA, Stanislav JEŽEK and Petra PÁTKOVÁ DAŇSOVÁ. Introductory Workshop: Introduction to the current state of dyslexia intervention, the possibility of eye-tracking technology and the needs of target users. 2024.

ŠAŠINKA, Čeněk, Nicol DOSTÁLOVÁ, Michaela VOJTĚCHOVSKÁ, Kateřina JOCHECOVÁ, David KOŠATKA, Stanislav JEŽEK and Petra PÁTKOVÁ DAŇSOVÁ. Introductory Workshop: Introduction to the current state of dyslexia intervention, the possibility of eye-tracking technology and the needs of target users. 2024.

SCHÄFER, Marco, Nicolas BRICH, Jan BYŠKA, Sérgio Manuel MARQUES, David BEDNÁŘ, Philipp THIEL, Barbora KOZLÍKOVÁ and Michael KRONE. InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Transactions on Visualization and Computer Graphics. IEEE Computer Society, 2024, vol. 30, No 4, p. 1984-1997. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2023.3337642.

POKOJNÁ, Hana, Simone KRIGLSTEIN, Barbora KOZLÍKOVÁ and Daniel Ricardo ECHEVERRI GIRALDO. Make Some Energy: Tangible and Interactive Chemical Reactions. Online. Linz, Austria: Ars Electronica, 2024, p. 19-25. Available from: https://dx.doi.org/10.5281/zenodo.1338283.

MRÁZ, Radoslav, Karel ŠTĚPKA, Matěj PEKÁR, Petr MATULA and Stanislav PEKÁR. MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations. Methods in Ecology and Evolution. HOBOKEN: WILEY, 2024, vol. 15, No 1, p. 36-42. ISSN 2041-210X. Available from: https://dx.doi.org/10.1111/2041-210X.14250.

BOUCHER, Magdalena, Christina STOIBER, Magdaléna KEJSTOVÁ, Martin KANDLHOFER, Alena ERTL, Simone KRIGLSTEIN and Wolfgang AIGNER. Mapping the Landscape of Data Visualizations in Schools and Educational Resources. Online. EuroVis 2024 - Education Pap. The Eurographics Association, 2024. Available from: https://dx.doi.org/10.2312/eved.20241052.

SMOLNICKÁ, Anna, Břetislav LIPOVÝ, Veronika PAVLIŇÁKOVÁ, Jakub HOLOUBEK, Martin FALDYNA, Edita JEKLOVÁ, Lucy VOJTOVÁ and Irena KOUTNÁ. Multilayered cellular skin substitute with biomimetic collagen-chitosan scaffold. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicíny. 2024. ISBN 978-80-01-07293-6.

KEJSTOVÁ, Magdaléna, Tereza ŠŤASTNÁ and Simone KRIGLSTEIN. Play and Viz: Using Entertainment Games for Exploring Data Visualizations. Online. In Gillian Smith,Jim Whitehead,Ben Samuel,Katta Spiel,Riemer van Rozen. Proceedings of the 19th International Conference on the Foundations of Digital Games. New York, NY, United States: Association for Computing Machinery, 2024. ISBN 979-8-4007-0955-5. Available from: https://dx.doi.org/10.1145/3649921.3650005.

SISKA VIRAGOVA, Eliska, Lenka NOVOTNA, Zdenek CHLUP, Premysl STASTNY, Pavlina SARFY, Jaroslav CIHLAR, Martin KUČÍREK, Leoš BENÁK, Libor STREIT, Jan KOCANDA, Jan SKLENSKÝ, Milan FILIPOVIČ, Martin REPKO, Aleš HAMPL, Irena KOUTNÁ and Klara CASTKOVA. Porous silica-doped calcium phosphate scaffolds prepared via in-situ foaming method. Ceramics International. London: Elsevier, 2024. ISSN 0272-8842. Available from: https://dx.doi.org/10.1016/j.ceramint.2024.07.433.

KOPŘIVOVÁ, Tereza, Miloš KEŘKOVSKÝ, Tomáš JŮZA, Václav VYBÍHAL, Tomáš ROHAN, Michal KOZUBEK and Marek DOSTÁL. Possibilities of Using Multi-b-value Diffusion Magnetic Resonance Imaging for Classification of Brain Lesions. Academic Radiology. New York: Elsevier, 2024, vol. 31, No 1, p. 261-272. ISSN 1076-6332. Available from: https://dx.doi.org/10.1016/j.acra.2023.10.002.

KRIGLSTEIN, Simone and Philipp WINTERSBERGER. Proceedings of the MuM'23 Workshops on Making a Real Connection and Interruptions and Attention Management co-located with 22nd International Conference on Mobile and Ubiquitous Media (MuM 2023). Online. 2024.

SOURALOVÁ, Tereza, Katarína ČIMBOROVÁ, Vendula PELKOVÁ, Aleš HAMPL and Irena KOUTNÁ. Quality Control of Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium Cells for Regenerative Therapy. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicína, Lednice. 2024. ISBN 978-80-01-07293-6.

KADLČÍK, Marek, Michal ŠTEFÁNIK, Ondřej SOTOLÁŘ and Vlastimil MARTINEK. Self-Training Language Models in Arithmetic Reasoning. In ICLR 2024 Workshop on Large Language Model (LLM) Agents. 2024.

JUŘÍKOVÁ, Zuzana, Nicol DOSTÁLOVÁ, Libor JUHAŇÁK and Vojtěch JUŘÍK. Studying Metacognitive Learning Processes with the Use of Eye-tracking Technology. In INTED2024, 18th International Technology, Education and Development Conference. 2024.

JUŘÍKOVÁ, Zuzana, Nicol DOSTÁLOVÁ, Libor JUHAŇÁK and Vojtěch JUŘÍK. Studying Metacognitive Learning Processes with the Use of Eye-tracking Technology. In INTED2024 Proceedings. 2024. ISBN 978-84-09-59215-9. Available from: https://dx.doi.org/10.21125/inted.2024.1250.

JONÁŠ, Martin, Kristián KUMOR, Jakub NOVÁK, Jindřich SEDLÁČEK, Marek TRTÍK, Lukáš ZAORAL, Paulína AYAZIOVÁ and Jan STREJČEK. Symbiotic 10: Lazy Memory Initialization and Compact Symbolic Execution. Online. In Bernd Finkbeiner and Laura Kovács. Tools and Algorithms for the Construction and Analysis of Systems - 30th International Conference, TACAS 2024, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2024, Luxembourg City, Luxembourg, April 6-11, 2024, Proceedings, Part III. Cham (Švýcarsko): Springer, 2024, p. 406-411. ISBN 978-3-031-57255-5. Available from: https://dx.doi.org/10.1007/978-3-031-57256-2_29.

POKOJNÁ, Hana, Tobias ISENBERG, Stefan BRUCKNER, Barbora KOZLÍKOVÁ and Laura GARRISON. The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. IEEE Transactions on Visualization and Computer Graphics. United States of America, 2024. ISSN 1077-2626.

MIKULA, Lukáš, Michal ŠTEFÁNIK, Marek PETROVIČ and Petr SOJKA. Think Twice: Measuring the Efficiency of Eliminating Prediction Shortcuts of Question Answering Models. In Yvette Graham, Matthew Purver. Proceedings of the 18th Conference of the European Chapter of the Association for Computational Linguistics (Volume 1: Long Papers). St. Julian's, Malta: Association for Computational Linguistics, 2024, p. 2179-2193. ISBN 979-8-89176-088-2.

DOSTÁLOVÁ, Nicol, Petra PÁTKOVÁ DAŇSOVÁ, Stanislav JEŽEK, Michaela VOJTĚCHOVSKÁ and Čeněk ŠAŠINKA. Towards the Intervention of Dyslexia: a Complex Concept of Dyslexia Intervention System using Eye-Tracking. Online. In Mohamed Khamis, Yusuke Sugano, Ludwig Sidenmark. ETRA '24: Proceedings of the 2024 Symposium on Eye Tracking Research and Applications. Association for Computing Machinery, New York NY, United States, 2024, p. 1-6. ISBN 979-8-4007-0607-3. Available from: https://dx.doi.org/10.1145/3649902.3656490.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Pavel VENTRUBA, Michal JEŠETA, Aleš HAMPL and Irena KOUTNÁ. Truncated vitronectin with e-cadherin enables the xeno-free derivation ofhuman embryonic stem cells. In 23rd Interdisciplinary Meeting of Young Biologists, Biochemists, and Chemists, Milovy. 2024.

KRIGLSTEIN, Simone. Using Playful Approaches in Education to Create Awareness of Pro-Sustainability Behavior. Interactions. ACM, 2024, p. 36–40. ISSN 1072-5520. Available from: https://dx.doi.org/10.1145/3653331.

JUŘÍK, Vojtěch, Kristína VARŠOVÁ, Jiří CHMELÍK and Oto JANOUŠEK. VRET ENVIRONMENTS ARCHITECTURE: ADJUSTING IMMERSIVE VIRTUAL ENVIRONMENTS FOR PSYCHOTHERAPEUTIC TRAINING. Online. In Luis Gómez Chova, Chelo González Martínez, Joanna Lees. INTED2024 Proceedings of 18th International Technology, Education and Development Conference. Valencia, Spain: INTED2024 Proceedings, 2024, p. 449-460. ISBN 978-84-09-59215-9. Available from: https://dx.doi.org/10.21125/inted.2024.

JUŘÍK, Vojtěch, Kristína VARŠOVÁ, Jiří CHMELÍK and Oto JANOUŠEK. VRET ENVIRONMENTS ARCHITECTURE: ADJUSTING IMMERSIVE VIRTUAL ENVIRONMENTS FOR PSYCHOTHERAPEUTIC TRAINING. In 18th annual International Technology, Education and Development Conference - INTED2024, Valencia, Spain. 2024. ISBN 978-84-09-59215-9.

ŠIKL, Radovan, Karla BRÜCKNEROVÁ, Hana ŠVEDOVÁ, Filip DĚCHTĚRENKO, Pavel UGWITZ, Jiří CHMELÍK, Hana POKORNÁ and Vojtěch JUŘÍK. Who benefits and who doesn't in virtual reality learning: An experimental study comparing two types of school. Journal of Computer Assisted Learning. Wiley, 2024. ISSN 0266-4909. Available from: https://dx.doi.org/10.1111/jcal.12973.

LANG, Matěj, Adam ŠTĚPÁNEK, Róbert ZVARA, Vojtěch ŘEHÁK and Barbora KOZLÍKOVÁ. Who Let the Guards Out: Visual Support for Patrolling Games. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2024. ISSN 1077-2626.

SOJKA, Petr. XXIV. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XXIV. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2024.

HUTEČKOVÁ, Barbora, Jan KŘIVÁNEK, Zuzana SUMBALOVÁ KOLEDOVÁ, Zuzana HOLUBCOVÁ, Matea BREZAK, Ivana AĆIMOVIĆ, Türkan PORTAKAL, Jana DUMKOVÁ, Lukáš MORÁŇ, Aleš HAMPL, Yelyzaveta MAKIEIEVA, Tereza VÁŇOVÁ, Dáša BOHAČIAKOVÁ, Václav CHOCHOLA, Josef JAROŠ, Katarína ČIMBOROVÁ, Irena KOUTNÁ, Michaela BOSÁKOVÁ, Tomáš BÁRTA, Vítězslav HAVLÍČEK, Soňa KLOUDOVÁ, Vincent Alexander JONGEN, Jarmila HERŮDKOVÁ, Marcos GONZÁLEZ LÓPEZ, Leoš BENÁK, Maryam AZAM, Haneen Riadh Ali TUAIMA, Margarita GORBULINA, Josef LAVICKÝ, Marina ŠTRUNCOVÁ, Erika MIKULENKOVÁ, Riza Can CAKMAKCI, Petr VAŇHARA, Vendula PELKOVÁ, Victorio Martin POZO DEVOTO, Hana KOTASOVÁ, Michaela KAVKOVÁ, Petr TAUŠ, David VYSLOUŽIL, Canan ÇELIKER, Kateřina AMRUZ ČERNÁ, Naděžda VAŠKOVICOVÁ, Tereza SOURALOVÁ, Volodymyr POROKH, Drahomíra KYJOVSKÁ, Daniela KROČIANOVÁ, Michaela CAPANDOVÁ, Veronika SEDLÁKOVÁ, Veronika FEDOROVÁ, Jan RAŠKA, Miriam SATKOVÁ, Petr FOJTÍK, Klára PLEŠINGROVÁ, Soňa CESNÁRIKOVÁ, Jiří SEDMÍK, Hana HŘÍBKOVÁ, Marko MEĆAVA, Adam HARMANEC, Veronika POSPÍŠILOVÁ, Tami BOČKOVÁ, Veronika BOSÁKOVÁ, Adam BOGDANOVIČ, Zbyněk ZDRÁHAL, Vladislav RAKULTSEV, Marcela BUCHTOVÁ, Simona BÁRTOVÁ and Petr GINTAR. 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. Edition: 1., electronic. Brno: Masarykova Univerzita, 2024, 18 pp. ISBN 978-80-280-0587-0.

NEUNDLINGER, Klaus, Elisabeth FRANKUS, Ines HÄUFLER, Thomas LAYER-WAGNER, Simone KRIGLSTEIN and Beate SCHRANK. » Virtual Skills Lab «-Transdisziplinäres Forschen zur Vermittlung sozialer Kompetenzen im digitalen Wandel. Online. transcript Verlag, 2023. ISBN 978-3-8394-6564-6. Available from: https://dx.doi.org/10.14361/9783839465646.

DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA and Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, p. 522-538. ISBN 978-3-031-34559-3. Available from: https://dx.doi.org/10.1007/978-3-031-34560-9_31.

LANG, Matěj, Clemens STROBEL, Felix WECKESSER, Danielle Kathryn LANGLOIS, Enkelejda KASNECI, Barbora KOZLÍKOVÁ and Michael KRONE. A multimodal smartwatch-based interaction concept for immersive environments. Computers & Graphics. Oxford: Elsevier, 2023, vol. 117, December, p. 85-95. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2023.10.010.

HLADÍK, Martin, Břetislav LIPOVÝ, Serhij FOROSTYAK, Jakub HOLOUBEK, Lucy VOJTOVÁ, Marián SEDLÁŘ, Katarína KACVINSKÁ, Svenja THEINER, Edita JEKLOVÁ and Irena KOUTNÁ. A novel biological wound dressing based on perinatal tissues: in vivo experiment on porcine animal model. In 14th Meeting of the European Plastic Surgery Research Council, Geneva, Switzerland. 2023.

SOJKA, Ondřej, Petr SOJKA and Jakub MÁCA. A Roadmap for Universal Syllabic Segmentation. Zpravodaj CSTUG. Brno: CSTUG, 2023, vol. 33, 3-4, p. 125-138. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2023-3-4/125.

SOJKA, Ondřej, Petr SOJKA and Jakub MÁCA. A Roadmap for Universal Syllabic Segmentation. TUGboat: The Communications of the TeX Users Group. San Francisco, USA: TUG, 2023, vol. 44, No 2, p. 289-296. ISSN 0896-3207.

DOSTÁLOVÁ, Nicol and Lukáš PLCH. A scoping review of web-cam eye tracking in learning and education. Studia Paedagogica. Brno: Masaryk University, Faculty of Arts, 2023, vol. 28, No 3, p. 113-131. ISSN 1803-7437. Available from: https://dx.doi.org/10.5817/SP2023-3-5.

PLISKA, Pavel, Mikoláš JURDA, Adriana STREJČKOVÁ, Marek TRTÍK, Patrik BAŠO, Radoslav BEŇA, Lukáš RAJNOHA, Štěpán DVOŘÁČEK, Martin ČUTA, Dominik ČERNÝ and Petra URBANOVÁ. A.D.A.P.T. Software. 2023.

GNADLINGER, Florian, André SELMANAGIĆ, Katharina SIMBECK and Simone KRIGLSTEIN. Adapting Is Difficult! Introducing a Generic Adaptive Learning Framework for Learner Modeling and Task Recommendation Based on Dynamic Bayesian Networks. Online. In Jelena Jovanovic, Irene-Angelica Chounta, James Uhomoibhi and Bruce McLaren. Proceedings of the 15th International Conference on Computer Supported Education - Volume 1. Prague: SciTePress, 2023, p. 272-280. ISBN 978-989-758-641-5. Available from: https://dx.doi.org/10.5220/0011964700003470.

FRAUNE, Marlena R, Danielle Kathryn LANGLOIS, Harrison PREUSSE, Jennifer M RHEMAN, Katrina LING and Katherine M TSUI. Affinity for Technology Relates to Group Cohesion for New, But Not Existing, Groups. OBM Neurobiology. LIDSEN Publishing Inc, 2023, vol. 7, No 3, p. 1-21. ISSN 2573-4407. Available from: https://dx.doi.org/10.21926/obm.neurobiol.2303182.

NEHYBA, Jan and Michal ŠTEFÁNIK. Applications of deep language models for reflective writings. Education and Information Technologies. UNITED STATES: SPRINGER, 2023, vol. 28, No 3, p. 2961-2999. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-022-11254-7.

KUNZOVÁ, Nikola and Daniel Ricardo ECHEVERRI GIRALDO. Bookwander: From Printed Fiction to Virtual Reality—Four Design Approaches for Enhanced VR Reading Experiences. Online. In Lissa Holloway-Attaway, John T. Murray. Interactive Storytelling: 16th International Conference on Interactive Digital Storytelling, ICIDS 2023, Kobe, Japan, November 11–15, 2023, Proceedings, Part I. Cham (Switzerland): Springer Nature Switzerland, 2023, p. 309-328. ISBN 978-3-031-47654-9. Available from: https://dx.doi.org/10.1007/978-3-031-47655-6_19.

KADLČÍK, Marek, Michal ŠTEFÁNIK, Ondřej SOTOLÁŘ and Vlastimil MARTINEK. Calc-X and Calcformers: Empowering Arithmetical Chain-of-Thought through Interaction with Symbolic Systems. Online. In Houda Bouamor, Juan Pino, Kalika Bali. Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: Main track. Singapore: Association for Computational Linguistics, 2023, p. 12101-12108. ISBN 979-8-89176-060-8. Available from: https://dx.doi.org/10.18653/v1/2023.emnlp-main.742.

ŠTEFÁNIK, Michal and Marek KADLČÍK. Can In-context Learners Learn a Reasoning Concept from Demonstrations?. Online. In Proceedings of the 1st Workshop on Natural Language Reasoning and Structured Explanations (NLRSE). Toronto, Canada: The Association for Computational Linguistics, 2023, p. 107-115. ISBN 978-1-959429-94-4.

NOVOTNÝ, Vít. Co nám jazykové modely říkají o manželství? (What Do Language Models Tell Us About Marriage?). Běstvina, 2023.

KEJSTOVÁ, Magdaléna, Christina STOIBER, Magdalena BOUCHER, Martin KANDLHOFER, Simone KRIGLSTEIN and Wolfgang AIGNER. Construct and Play: Engaging Students with Visualizations through Playful Methods. Online. In Jim Wallace, Jennifer Whitson, Beth Bonsignore, Julian Frommel, and Erik Harpstead. In Companion Proceedings of the Annual Symposium on Computer-Human Interaction in Play (CHI PLAY Companion '23). New York: Association for Computing Machinery, 2023, p. 96-101. ISBN 979-8-4007-0029-3. Available from: https://dx.doi.org/10.1145/3573382.3616082.

LIAPIS, Antonios, Christian GUCKELSBERGER, Jichen ZHU, Casper HARTEVELD, Simone KRIGLSTEIN, Alena DENISOVA, Jeremy GOW and Mike PREUSS. Designing for Playfulness in Human-AI Authoring Tools. Online. In Proceedings of the 18th International Conference on the Foundations of Digital Games (FDG '23). New York: ACM, 2023, p. 1-4. ISBN 978-1-4503-9856-5. Available from: https://dx.doi.org/10.1145/3582437.3587192.

DOSTÁLOVÁ, Nicol and Roman ŠVAŘÍČEK. Diagnostika dyslexie s využitím eye trackingu a umělé inteligence (Diagnosing dyslexia using eye tracking and artificial intelligence). 2023.

ŠVAŘÍČEK, Roman, Nicol DOSTÁLOVÁ, Čeněk ŠAŠINKA and Jan SEDMIDUBSKÝ. Diagnostika dyslexie s využitím eye-trackingu a umělé inteligence - souhrnná výzkumná zpráva (Diagnostics of Dyslexia Using Eye-Tracking and Artificial Intelligence - Research Report). Brno: Masarykova univerzita, 2023, 26 pp.

DOSTÁLOVÁ, Nicol. Diagnostika dyslexie s využitím eye-trackingu a umělé inteligence pro školní psychology. In Přednáška pro školní psychology. 2023.

DOSTÁLOVÁ, Nicol. Diagnostika dyslexie s využitím eye-trackingu a umělé inteligence pro školní speciální pedagogy. In Přednáška pro školní speciální pedagogy. 2023.

LANGLOIS, Danielle Kathryn and Simone KRIGLSTEIN. Do you have time for a survey? Challenges and Lessons Learned from the Recruitment Process for an Online Survey. Online. In In Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems. Hamburg, Germany: ACM, 2023, p. 1-5. ISBN 978-1-4503-9422-2. Available from: https://dx.doi.org/10.1145/3544549.3573865.

ŠČAVNICKÁ, Šárka, Michal ŠTEFÁNIK and Petr SOJKA. Document Visual Question Answering with CIVQA: Czech Invoice Visual Question Answering Dataset. In Recent Advances in Slavonic Natural Language Processing (RASLAN 2023). Recent Advances in Slavonic. Brno: Tribun EU, 2023, p. 23-34. ISBN 978-80-263-1793-7.

SENA, Ítalo de, Chiara COCCO, Vojtěch BRŮŽA, Pierre LENICOLAIS, Saul CROWLEY and Francesco PILLA. EbAcraft: Engaging Local Communities in Learning About Ecosystem-Based Adaptation for Coastal Cities in Europe. Online. In 19th International Conference on e-Science (e-Science). 2023 IEEE 19th International Conference on e-Science (e-Science). Kypr: IEEE, 2023, p. 1-9. ISBN 979-8-3503-2224-8. Available from: https://dx.doi.org/10.1109/e-Science58273.2023.10254941.

BRŮŽA, Vojtěch and Jiří CHMELÍK. eDIVE - Software Platform for Education in Collaborative Immersive Virtual Environments. 2023.

POKOJNÁ, Hana, Farhan RASHEED and Konrad SCHÖNBORN. Effect of the Rings: A Visual Story Design Comparing Three Chemical Characters. In Mark A. Roughley. Approaches for Science Illustration and Communication. Switzerland: Springer Nature, 2023, p. 133-156. Approaches for Science Illustration and Communication. ISBN 978-3-031-41651-4. Available from: https://dx.doi.org/10.1007/978-3-031-41652-1_6.

JUHAŇÁK, Libor, Nicol DOSTÁLOVÁ, Zuzana JUŘÍKOVÁ and Vojtěch JUŘÍK. Exploring the Effects of Metacognitive Prompts on Learning Outcomes in Multimedia Learning. In European Conference on Educational Research, ECER 2023, University of Glasgow, 22–25 August 2023. 2023.

ECHEVERRI GIRALDO, Daniel Ricardo and Huaxin WEI. Exploring the experience with tangible interactive narrative: Authoring and evaluation of Letters to José. ENTERTAINMENT COMPUTING. ENGLAND: ELSEVIER SCI LTD, 2023, vol. 44, No 100535, p. 1-18. ISSN 1875-9521. Available from: https://dx.doi.org/10.1016/j.entcom.2022.100535.

ŠVAŘÍČEK, Roman and Nicol DOSTÁLOVÁ. Eye movements during reading in children with dyslexia : An eye-tracking study. In ATEE Annual Conference 2023 TEACHER EDUCATION ON THE MOVE; 27.-30.8.2023, Budapešť. 2023. ISBN 978-94-646685-1-3.

DLUGOŠOVÁ, Slavomíra, Zuzana KAŇOVSKÁ and Irena KOUTNÁ. FLOW CYTOMETRIC ANALYSIS OF NORMAL AND OSTEOARTHRITIC CHONDROCYTES. In 12th International Conference Analytical Cytometry, Prague, Czech Republic. 2023.

POKORNÝ, Jan, Magdaléna KEJSTOVÁ, Vít RUSŇÁK and Simone KRIGLSTEIN. From Bin to Playin’: Give Vintage Objects a New Purpose as Game Controllers. Online. In Albrecht Schmidt, Kaisa Väänänen, Tesh Goyal, Per Ola Kristensson, Anicia Peters. Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems (CHI EA '23). Hamburg, Germany: Association for Computing Machinery, 2023, p. 1-6. ISBN 978-1-4503-9422-2. Available from: https://dx.doi.org/10.1145/3544549.3585665.

DOSTÁLOVÁ, Nicol. How do dyslexic children read? Evidence from eye tracking. In 17th International Technology, Education and Development Conference, Valencia, Spain. 2023. Available from: https://dx.doi.org/10.21125/inted.2023.1609.

LING, Katrina, Danielle Kathryn LANGLOIS, Harrison PREUSSE, Jennifer M. RHEMAN, Danya PARSON, Sarah KUBALLA, Martin SIMECEK, Kathrine M. TSUI and Marlena R. FRAUNE. If you weren’t connected tothe Internet, you were not alive”: experience ofusing social technology during COVID-19 inadults 50+. Frontiers in Public Health. 2023, vol. 11, No 1177683, p. 1-14. ISSN 2296-2565. Available from: https://dx.doi.org/10.3389/fpubh.2023.1177683.

EŠNER, Milan, Vladimír ULMAN, Nils NORLIN, Ivana SEKANINOVÁ and Eliška JANÍČKOVÁ. ImgLib2 and BigDataViewer Hackathon Brno. 2023.

KUNZOVÁ, Nikola. Immersive Reading in VR. In IASDR 2023: Life-Changing Design. 2023.

LANGLOIS, Danielle Kathryn and Simone KRIGLSTEIN. Initial Developments of Teamwork and Mental Health Focused Minigames for the Purpose of Esports Training. Online. In Computer-Human Interaction Research and Applications. CHIRA 2023. Rome, Italy: Springer, 2023, p. 338-348. ISBN 978-3-031-49367-6. Available from: https://dx.doi.org/10.1007/978-3-031-49368-3_21.

LIORNI, Niccolo, Alessandro NAPOLI, Stefano CASTELLANA, Sebastiano GIALLONGO, Daniela HULÍNOVÁ, Oriana LO RE, Irena KOUTNÁ, Tommaso MAZZA and Manlio VINCIGUERRA. Integrative CUT&Tag-RNA-Seq analysis of histone variant macroH2A1-dependent orchestration of human induced pluripotent stem cell reprogramming. Epigenomics. Future Medicine Ltd, 2023, vol. 15, No 17, p. 863-877. ISSN 1750-1911. Available from: https://dx.doi.org/10.2217/epi-2023-0267.

PAČÍNKOVÁ, Anna and Vlad POPOVICI. IntOMICS: A Bayesian Framework for Reconstructing Regulatory Networks Using Multi-Omics Data. Journal of Computational Biology. Mary Ann Liebert, Inc., 2023, vol. 30, No 5, p. 569-574. ISSN 1066-5277. Available from: https://dx.doi.org/10.1089/cmb.2022.0149.

MRÁZEK, Pavel, Pejman MIRZA-BABAEI, Günter WALLNER and Simone KRIGLSTEIN. Lessons Learned from Designing and Implementing Interaction Mechanics for Viewer Participation in Game Streaming. Online. In Abdelnour Nocera, J., Kristín Lárusdóttir, M., Petrie, H., Piccinno, A., Winckler, M. IFIP Conference on Human-Computer Interaction (INTERACT 2023). York, UK: Springer, 2023, p. 517-522. ISBN 978-3-031-42292-8. Available from: https://dx.doi.org/10.1007/978-3-031-42293-5_65.

MAREČKOVÁ, Klára, Anna PAČÍNKOVÁ, Radek MAREČEK, Ludmila ŠEBEJOVÁ, Lydie IZAKOVIČOVÁ HOLLÁ, Jana KLÁNOVÁ, Milan BRÁZDIL and Yuliya S. NIKOLOVA. Longitudinal study of epigenetic aging and its relationship with brain aging and cognitive skills in young adulthood. frontiers in aging neuroscience. LAUSANNE: FRONTIERS MEDIA SA, 2023, vol. 15, August 2023, p. 1-9. ISSN 1663-4365. Available from: https://dx.doi.org/10.3389/fnagi.2023.1215957.

KRIGLSTEIN, Simone, Gloria MITTMANN, Adam BARNARD and Kate WOODCOCK. Making A Real Connection - Workshop @ 22nd International Conference on Mobile and Ubiquitous Multimedia (MUM 2023). 2023.

KRIGLSTEIN, Simone, Gloria MITTMANN, Adam BARNARD and Kate WOODCOCK. Making A Real Connection: Pro-Social Collaborative Play in Extended Realities – Trends, Challenges and Potentials. Online. In Proceedings of the 22nd International Conference on Mobile and Ubiquitous Multimedia (MUM '23). Vienna, Austria: ACM, 2023, p. 544-547. ISBN 979-8-4007-0921-0. Available from: https://dx.doi.org/10.1145/3626705.3626708.

ŠVAŘÍČEK, Roman, Nicol DOSTÁLOVÁ, Čeněk ŠAŠINKA, Jan SEDMIDUBSKÝ and Pavel ZEZULA. Manuál k diagnostické platformě DYSLEX určený pro Pedagogicko-psychologické poradny (Manual for the DYSLEX Diagnostic Platform Designed for Educational-Psychological Counseling Centers). Brno, 2023, 18 pp.

MRÁZ, Radoslav, Karel ŠTĚPKA, Matěj PEKÁR, Petr MATULA and Stanislav PEKÁR. MAPHIS - Measuring arthropod phenotypes using hierarchical image segmentations. 2023. Available from: https://dx.doi.org/10.1111/2041-210X.14250.

POKOJNÁ, Hana. MEDICAL ART AND THE PANDEMIC FROM IDENTIFYING THE ‘BIG BAD’ TO ADVANCEMENTS IN MEDICAL EDUCATION. Online. In Alexander Pfeiffer, Nandhita Krishna, Natalie Denk, Thomas Wernbacher. MEDIA, ARTS AND DESIGN (MAD) ANTHOLOGY II: MAD Pandemic: Stories of Change and Continuity during the COVID-19 Crisis. tredition GmbH, Halenreie 40-44, 22359 H: University of Krems Press., 2023, p. 63-80. ISBN 978-3-903470-10-1. Available from: https://dx.doi.org/10.48341/hx6g-pw64.

KOUŘIL, David, Ondřej STRNAD, Peter MINDEK, Sarkis HALLADJIAN, Tobias ISENBERG, M Eduard GROLLER and Ivan VIOLA. Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization. IEEE transactions on visualization and computer graphics. Los Alamitos: IEEE Computer Society, 2023, vol. 29, No 3, p. 1733-1747. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2021.3130670.

ALHARBI, Ruwayda, Ondřej STRNAD, Laura R LUIDOLT, Manuela WALDNER, David KOUŘIL, Ciril BOHAK, Tobias KLEIN, Eduard GROELLER and Ivan VIOLA. Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments. IEEE transactions on visualization and computer graphics. Los Alamitos: IEEE Computer Society, 2023, vol. 29, No 3, p. 1860-1875. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2021.3133592.

STARÝ NOVOTNÝ, Vít. Nápadovník jmen pro tvůrčí psaní v LuaTeXu (Character Name Generator for Creative Writing in LuaTeX). Zpravodaj CSTUG. Brno: CSTUG, 2023, vol. 33, 1-2, p. 3-38. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2023-1-2/3.

HORÁK, Aleš, Adam RAMBOUSEK, Pavel RYCHLÝ, Vít NOVOTNÝ and Tereza VRABCOVÁ. Nástroj na extrakci pojmenovaných entit a vztahů ze skenovaných textů (A Tool for the Extraction of Named Entities and Their Relationships from Scanned Texts). 2023.

NOVOTNÝ, Vít, Kristýna LUGER, Michal ŠTEFÁNIK, Tereza VRABCOVÁ and Aleš HORÁK. People and Places of Historical Europe: Bootstrapping Annotation Pipeline and a New Corpus of Named Entities in Late Medieval Texts. Online. In Anna Rogers, Jordan Boyd-Graber, Naoaki Okazaki. Findings of the Association for Computational Linguistics: ACL 2023. Toronto, Canada: Association for Computational Linguistics, 2023, p. 14104-14113. ISBN 978-1-959429-62-3.

ŠVAŘÍČEK, Roman, Nicol DOSTÁLOVÁ, Jan SEDMIDUBSKÝ, Čeněk ŠAŠINKA, Pavel ZEZULA, Wolf CULEMANN and Adam DOSTÁL. Platforma DYSLEX (DYSLEX Platform). 2023.

JALALI, Anahid, Bernhard HASLHOFER, Simone KRIGLSTEIN and Andreas RAUBER. Predictability and Comprehensibility in Post-Hoc XAI Methods: A User-Centered Analysis. In Arai, K. Intelligent Computing. Springer, 2023. Available from: https://dx.doi.org/10.1007/978-3-031-37717-4_46.

LANGLOIS, Danielle Kathryn, Scott DRURY and Simone KRIGLSTEIN. Press H to Help: The Impact of Prosocial Video Games on Prosocial Behaviors by Exposure Time. Online. In In Foundations of Digital Games 2023 (FDG 2023). Lisbon, Portugal: ACM, 2023, p. 1-10. ISBN 978-1-4503-9856-5. Available from: https://dx.doi.org/10.1145/3582437.3582459.

HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL and Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, vol. 14, No 2577, p. 1-15. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-37991-y.

ANTOL, Matej, Michal RŮŽIČKA, Luděk MATYSKA and Jiří MAREK. Public (Health) Sector and Academia. In Martin Komenda. Data-Driven Decision-Making in Medical Education and Healthcare. First edition. Brno: Masaryk University, 2023, p. 51-66. Data Rulezzzz! ISBN 978-80-280-0392-0.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL and Irena KOUTNÁ. Quality control of clinical-grade human embryonic stem cells. In Standardizing Stem Cell Core Facilities in Europe: a CorEuStem Symposium, Lisbon, Portugal. 2023.

ANSAH, Alberta A, Adriana S VIVACQUA, Sailin ZHONG, Susanne BOLL, Marios CONSTANTINIDES, Himanshu VERMA, Abdallah El ALI, Alina LUSHNIKOVA, Hamed ALAVI, Sean RINTEL, Andrew L KUN, Orit SHAER, Anna L COX, Kathrin GERLING, Michael MULLER, Vít RUSŇÁK, Leticia Santos MACHADO, Thomas KOSCH, CHIWORK COLLECTIVE and SIGCHI EXECUTIVE COMMITTEE. Reflecting on Hybrid Events: Learning from a Year of Hybrid Experiences. Online. In Albrecht Schmidt, Kaisa Väänänen, Tesh Goyal, Per Ola Kristensson, Anicia Peters. Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems (CHI EA '23). New York, NY, USA: Association for Computing Machinery, 2023, p. 1–4, 5 pp. Available from: https://dx.doi.org/10.1145/3544549.3583181.

ŠTEFÁNIK, Michal, Marek KADLČÍK, Piotr GRAMACKI and Petr SOJKA. Resources and Few-shot Learners for In-context Learning in Slavic Languages. Online. In Jakub Piskorski, Michał Marcińczuk, Preslav Nakov, Maciej Ogrodniczuk, Senja Pollak, Pavel Přibáň, Piotr Rybak, Josef Steinberger, Roman Yangarber. Proceedings of the 9th Workshop on Slavic Natural Language Processing 2023 (SlavicNLP 2023). Dubrovnik, Croatia: Association for Computational Linguistics, 2023, p. 94-105. ISBN 978-1-959429-57-9.

JUHAŇÁK, Libor, Karla BRÜCKNEROVÁ, Nicol DOSTÁLOVÁ and Barbora NEKARDOVÁ. Seberegulované učení vysokoškolských studentů v prostředí e-learningu: Pohled multimodální analytiky učení (Self-regulated learning of university students in an e-learning environment: A multimodal learning analytics perspective). In XXXI. výroční konference ČAPV 2023, 2023. 2023. ISBN 978-80-280-0359-3.

KOSA, Fruzsina, Tereza NEČASOVÁ, Martin SPACEK, Krzysztof GIANNOPOULOS, Iwona HUS, Tereza JURKOVÁ, Eva KORIŤÁKOVÁ, Marika CHRÁPAVÁ, Martina NOVACKOVA, Ivana KATINOVÁ, Denisa KREJČÍ, Adam JUJKA, Zoltan MATRAI, Istvan VALYI-NAGY, Tadeusz ROBAK and Michael DOUBEK. Secondary malignancies and survival of FCR-treated patients with chronic lymphocytic leukemia in Central Europe. Cancer Medicine. Hoboken: John Wiley & Sons Ltd., 2023, vol. 12, No 2, p. 1961-1971. ISSN 2045-7634. Available from: https://dx.doi.org/10.1002/cam4.5033.

POKOJNÁ, Hana, Barbora KOZLÍKOVÁ, Drew BERRY, Simone KRIGLSTEIN and Katarína FURMANOVÁ. Seeing the unseen: Comparison study of representation approaches for biochemical processes in education. PLoS ONE. 2023, vol. 18, No 11, p. 1-27. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0293592.

HRADECKÁ, Lucia, David WIESNER, Jakub SUMBAL, Zuzana SUMBALOVÁ KOLEDOVÁ and Martin MAŠKA. Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy. IEEE Transactions on Medical Imaging. 2023, vol. 42, No 1, p. 281-290. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2022.3210714.

GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB and Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 78, December, p. 52-67. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.09.008.

ULBRICH, Pavol, Manuela WALDNER, Katarína FURMANOVÁ, Sérgio Manuel MARQUES, David BEDNÁŘ, Barbora KOZLÍKOVÁ and Jan BYŠKA. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2023, vol. 29, No 1, p. 581-590. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2022.3209411.

ŠTEFÁNIK, Michal, Marek KADLČÍK and Petr SOJKA. Soft Alignment Objectives for Robust Adaptation of Language Generation. Online. In Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). Toronto, Canada: Association for Computational Linguistics, 2023, p. 8837-8853. ISBN 978-1-959429-72-2. Available from: https://dx.doi.org/10.18653/v1/2023.acl-long.492.

WIESNER, David and Julian SUK. Spatiotemporal cell surface generator. 2023.

LIPOVÝ, Břetislav, Martin KNOZ, Jakub HOLOUBEK, Eva HORÁLKOVÁ, Veronika PAVLIŇÁKOVÁ, Martin FALDYNA, Edita JEKLOVÁ, Radka CHALOUPKOVÁ, Zdeněk PAVLOVSKÝ, Irena KOUTNÁ and Lucy VOJTOVÁ. Stable Fibroblast Growth Factor 2 and its role in research from dermal regeneration to total skin substitute. In Recent Advances in Surgery and Burns, Kızılcahamam, Ankara, Turkey. 2023.

KUŤÁK, David, Pere-Pau VÁZQUEZ, Tobias ISENBERG, Michael KRONE, Marc BAADEN, Jan BYŠKA, Barbora KOZLÍKOVÁ and Haichao MIAO. State of the Art of Molecular Visualization in Immersive Virtual Environments. Computer Graphics Forum. Wiley-Blackwell, 2023, vol. 42, No 6, p. 1-29. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14738.

ECHEVERRI GIRALDO, Daniel Ricardo. Stories from an unfinished prototype: a seemingly never-ending loop of practice and research. Online. In De Sainz Molestina, D., Galluzzo, L., Rizzo, F., Spallazzo, D. Proceedings of IASDR 2023: Life-changing Design Editors. Milan, Italy: Design Research Society, 2023, p. 1-13. ISBN 978-1-912294-59-6. Available from: https://dx.doi.org/10.21606/iasdr.2023.131.

HORÁK, Aleš, Adam RAMBOUSEK, Pavel RYCHLÝ, Vít NOVOTNÝ and Tereza VRABCOVÁ. Systém portálu AHISTO (AHISTO System Portal). 2023.

HULÍNOVÁ, Daniela, Šimon FARKAŠ, Aleš HAMPL, Miloslava FOJTOVÁ and Irena KOUTNÁ. Telomere Length In Human Pluripotent Stem Cells. In ISSCR Annual meeting 2023, Boston, USA. 2023.

MAŠKA, Martin, Vladimír ULMAN, Pablo DELGADO-RODRIGUEZ, Estibaliz GÓMEZ-DE-MARISCAL, Tereza NEČASOVÁ, Fidel A Guerrero PEÑA, Tsang Ing REN, Elliot M MEYEROWITZ, Tim SCHERR, Katharina LÖFFLER, Ralf MIKUT, Tianqi GUO, Yin WANG, Jan P ALLEBACH, Rina BAO, Noor M AL-SHAKARJI, Gani RAHMON, Imad Eddine TOUBAL, Kannappan PALANIAPPAN, Filip LUX, Petr MATULA, Ko SUGAWARA, Klas E G MAGNUSSON, Layton AHO, Andrew R COHEN, Assaf ARBELLE, Tal BEN-HAIM, Tammy Riklin RAVIV, Fabian ISENSEE, Paul F JÄGER, Klaus H MAIER-HEIN, Yanming ZHU, Cristina EDERRA, Ainhoa URBIOLA, Erik MEIJERING, Alexandre CUNHA, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. The Cell Tracking Challenge: 10 years of objective benchmarking. Nature Methods. 2023, vol. 20, No 7, p. 1010-1020. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/s41592-023-01879-y.

VENTRUBA, Tomáš, Pavel VENTRUBA, Michal JEŠETA, Jana ŽÁKOVÁ, Eva LOUSOVÁ, Igor CRHA, Tereza SOURALOVÁ, Irena KOUTNÁ and Aleš HAMPL. The contribution of donated human embryos suitable for the production of embryonic stem cells to increase the quality of life: Selection and preparation of embryos in the Czech Republic. Advances in Clinical and Experimental Medicine. WROCLAW: WROCLAW MEDICAL UNIV, 2023, vol. 32, No 8, p. 901-907. ISSN 1899-5276. Available from: https://dx.doi.org/10.17219/acem/158777.

ŠUFLIARSKY, Adam, Günter WALLLNER and Simone KRIGLSTEIN. Through Space and Time: Spatio-Temporal Visualization of MOBA Matches. Online. In Abdelnour Nocera, J., Kristín Lárusdóttir, M., Petrie, H., Piccinno, A., Winckler, M. IFIP Conference on Human-Computer Interaction (INTERACT 2023). York, UK: Springer, 2023, p. 167-189. ISBN 978-3-031-42282-9. Available from: https://dx.doi.org/10.1007/978-3-031-42283-6_9.

RUSŇÁK, Vít and Martin DRAŠAR. Towards a Visual Analytics Workflow for Cybersecurity Simulations. Online. In Christophe Hurter, Helen Purchase, Kadi Bouatouch. Proceedings of VISIGRAPP2023 - Volume3: IVAPP. To appear. Lisbon, Portugal: SCITEPRESS – Science and Technology Publications, Lda., 2023, p. 179-186. ISBN 978-989-758-634-7. Available from: https://dx.doi.org/10.5220/0011695000003417.

SOJKA, Ondřej and Petr SOJKA. Towards Perfection of Machine Learning of Competing Patterns: The Use Case of Czechoslovak Patterns Development. In Recent Advances in Slavonic Natural Language Processing (RASLAN 2023). Recent Advances in Slavonic. Brno: Tribun EU, 2023, p. 113-120. ISBN 978-80-263-1793-7.

GERDENITSCH, Cornelia, Till BIEG, Myriam GAITSCH, Philip SCHÖRPF, Manfred TSCHELIGI and Simone KRIGLSTEIN. Tracking to Success? A Critical Reflection on Workplace Quantified-Self Technologies from a Humanistic Perspective. Online. In Proceedings of the 2nd Annual Meeting of the Symposium on Human-Computer Interaction for Work (CHIWORK '23). Oldenburg: ACM, 2023, p. 1-7. ISBN 979-8-4007-0807-7. Available from: https://dx.doi.org/10.1145/3596671.3597653.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Michal JEŠETA, Pavel VENTRUBA, Aleš HAMPL and Irena KOUTNÁ. Truncated vitronectin with E-cadherin enables the xeno-free derivation of human embryonic stem cells. Scientific Reports. BERLIN: NATURE PORTFOLIO, 2023, vol. 13, No 1, p. 1-9. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-023-42236-5.

DOSTÁLOVÁ, Nicol, Čeněk ŠAŠINKA, Jiří ČENĚK and Roman ŠVAŘÍČEK. UNRAVELING THE SECRETS OF DYSLEXIA WITH ADVANCED EYE-TRACKING DATA ANALYSES. In 16th International Conference of Education, Research and Innovation. 2023. Available from: https://dx.doi.org/10.21125/iceri.2023.

PAGÁČ, Tomáš and Simone KRIGLSTEIN. Using Audience Avatars to Increase Sense of Presence in Live-Streams. Online. In International Conference on Computer-Human Interaction Research and Applications. Rome, Italy: Springer, 2023, p. 326-337. ISBN 978-3-031-49367-6. Available from: https://dx.doi.org/10.1007/978-3-031-49368-3_20.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Michal JEŠETA, Pavel VENTRUBA, Aleš HAMPL and Irena KOUTNÁ. Vitronectin is a xeno-free and defined surface for the derivation of human embryonic stem cells. In ISSCR Annual meeting 2023, Boston, USA. 2023.

EISENMANN, M., A. REINKE, V. WERU, M. D. TIZABI, F. ISENSEE, T. J. ADLER, S. ALI, V. ANDREARCZYK, M. AUBREVILLE, U. BAID, S. BAKAS, N. BALU, S. BANO, J. BERNAL, S. BODENSTEDT, A. CASELLA, V. CHEPLYGINA, M. DAUM, M. DE BRUIJNE, A. DEPEURSINGE, R. DORENT, J. EGGER, D. G. ELLIS, S. ENGELHARDT, M. GANZ, N. GHATWARY, G. GIRARD, P. GODAU, A. GUPTA, L. HANSEN, K. HARADA, M. HEINRICH, N. HELLER, A. HERING, A. HUAULME, P. JANNIN, A. E. KAVUR, O. KODYM, Michal KOZUBEK, J. LI, H. LI, J. MA, C. MARTIN-ISLA, B. MENZE, A. NOBLE, V. OREILLER, N. PADOY, S. PATI, K. PAYETTE, T. RAEDSCH, J. RAFAEL-PATINO, V. Singh BAWA, S. SPEIDEL, C. H. SUDRE, K. VAN WIJNEN, M. WAGNER, D. WEI, A. YAMLAHI, M. H. YAP, C. YUAN, M. ZENK, A. ZIA, D. ZIMMERER, D. AYDOGAN, B. BHATTARAI, L. BLOCH, R. BRUENGEL, J. CHO, C. CHOI, Q. DOU, I. EZHOV, C. M. FRIEDRICH, C. FULLER, R. R. GAIRE, A. GALDRAN, A. Garcia FAURA, M. GRAMMATIKOPOULOU, S. HONG, M. JAHANIFAR, I. JANG, A. KADKHODAMOHAMMADI, I. KANG, F. KOFLER, S. KONDO, H. KUIJF, M. LI, M. LUU, T. MARTINCIC, P. MORAIS, M. A. NASER, B. OLIVEIRA, D. OWEN, S. PANG, J. PARK, S. PARK, S. PLOTKA, E. PUYBAREAU, N. RAJPOOT, K. RYU, N. SAEED, A. SHEPHARD, P. SHI, D. STEPEC, R. SUBEDI, G. TOCHON, H. R. TORRES, H. URIEN, J. L. VILACA, K. A. WAHID, H. WANG, J. WANG, L. WANG, X. WANG, B. WIESTLER, M. WODZINSKI, F. XIA, J. XIE, Z. XIONG, S. YANG, Y. YANG, Z. ZHAO, K. MAIER-HEIN, P. F. JAEGER, A. KOPP-SCHNEIDER and L. MAIER-HEIN. Why is the winner the best?. Online. In 979-8-3503-0129-8. 2023 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR). Vancouver: IEEE COMPUTER SOC, 2023, p. 19955-19966. ISBN 979-8-3503-0129-8. Available from: https://dx.doi.org/10.1109/CVPR52729.2023.01911.

HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA and Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, vol. 42, No 3, p. 63-73. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14812.

SOJKA, Petr. XXIII. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XXIII. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2023.

ŠTEFÁNIK, Michal, Vít NOVOTNÝ, Nikola GROVEROVÁ and Petr SOJKA. AdaptOr: Objective-Centric Adaptation Framework for Language Models. Online. In Valerio Basile, Zornitsa Kozareva, Sanja Stajner. Proceedings of the 60th Conference of Association of Computational Linguistics, ACL 2022. Dublin, Irsko: Association for Computational Linguistics, ACL, 2022, p. 261-269. ISBN 978-1-955917-24-7. Available from: https://dx.doi.org/10.18653/v1/2022.acl-demo.26.

NOVACEK, Vít, Marko ŘEHÁČEK, Petr ZELINA and Jana HALÁMKOVÁ. AI for Cancer Patient Empowerment - Interim Results of the AIcope Project. 2022.

BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR and Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, vol. 8, No 2, p. 129-142. ISSN 2056-4538. Available from: https://dx.doi.org/10.1002/cjp2.249.

BURGOS, Ninon and David SVOBODA. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Elsevier, 2022, 674 pp. ISBN 978-0-12-824349-7.

LANG, Matěj, Čeněk ŠAŠINKA, Zdeněk STACHOŇ and Jiří CHMELÍK. Brýle pro rozšířenou realitu: letová podpora pilotů ultralehkých letadel - funkční prototyp (Augmented Reality Glasses - support for ultralight aircraft pilots - prototype). 2022.

KUŤÁK, David, Lucas MELO, Fabian SCHROEDER, Zoe JELIC-MATOŠEVIĆ, Natalie MUTTER, Branimir BERTOŠA and Ivan BARIŠIĆ. CATANA: an online modelling environment for proteins and nucleic acid nanostructures. Nucleic acids research. Oxford: Oxford University Press, 2022, vol. 50, W1, p. 152-158. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkac350.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL and Irena KOUTNÁ. CLINICAL-GRADE HUMAN EMBRYONIC STEM CELLS. In the XXI. Interdisciplinary Meeting of Young Biologists, Biochemists and Chemists, Milovy, Czech Republic. 2022. ISSN 2336-7210.

SEDLÁK, Michal, Čeněk ŠAŠINKA, Zdeněk STACHOŇ, Jiří CHMELÍK and Milan DOLEŽAL. Collaborative and individual learning of geography in immersive virtual reality : An effectiveness study. PLoS One. San Francisco: Public Library of Science, 2022, vol. 17, No 10, p. 1-18. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0276267.

NOVOTNÝ, Vít and Michal ŠTEFÁNIK. Combining Sparse and Dense Information Retrieval: Soft Vector Space Model and MathBERTa at ARQMath-3 Task 1 (Answer Retrieval). Online. In Guglielmo Faggioli, Nicola Ferro, Allan Hanbury, Martin Potthast. Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum. Bologna: CEUR-WS, 2022, p. 104-118. ISSN 1613-0073.

ŤAPUCHOVÁ, Ivana, Robert PYTLIK, Pavel ŠIMARA, Lenka TESAŘOVÁ and Irena KOUTNÁ. Cytomegalovirus and other herpesviruses after hematopoietic cell and solid organ transplantation: From antiviral drugs to virus-specific T cells. Transplant Immunology. Amsterdam: Elsevier B.V., 2022, vol. 71, April, p. 1-13. ISSN 0966-3274. Available from: https://dx.doi.org/10.1016/j.trim.2022.101539.

DOČKALOVÁ BURSKÁ, Karolína, Vít RUSŇÁK and Radek OŠLEJŠEK. Data-driven insight into the puzzle-based cybersecurity training. Computers & Graphics. Elsevier Science, 2022, vol. 102, February 2022, p. 441-451. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2021.09.011.

ECHEVERRI GIRALDO, Daniel Ricardo. Dear Design Journal: A Visual Journey and a Reflective Account of a Practice-Led Doctoral Research. Online. In Bruyns, G., Wei, H. [ ] With Design: Reinventing Design Modes. IASDR 2021. Singapore: Springer, 2022, p. 1975-1989. ISBN 978-981-19-4471-0. Available from: https://dx.doi.org/10.1007/978-981-19-4472-7_129.

KEŘKOVSKÝ, Miloš, Marek DOSTÁL, Tereza KOPŘIVOVÁ, Tomáš JŮZA, Václav VYBÍHAL, Eduard NEUMAN, Petr MATULA and Michal KOZUBEK. Differentiation of high grade glioma and brain metastasis using intravoxel incoherent motion MRI. In 45th ESNR Annual Meeting. 2022.

VRABCOVÁ, Tereza. Digitální archivace Zpravodaje CSTUGu (Digital Archival of the CSTUG Bulletin). Zpravodaj CSTUG. Brno: CSTUG, 2022, vol. 32, 1-4, p. 11-17. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2022-1-4/11.

GELETKA, Martin, Vojtěch KALIVODA, Michal ŠTEFÁNIK, Marek TOMA and Petr SOJKA. Diverse Semantics Representation is King. Online. In Guglielmo Faggioli, Nicola Ferro, Allan Hanbury, Martin Potthast. Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum. Bologna: CEUR.org, 2022, p. 28-39. ISSN 1613-0073.

SIGCHI EXECUTIVE, Committee, Adriana S VIVACQUA, Andrew L KUN, Cale PASSMORE, Helena MENTIS, Josh ANDRES, Kashyap TODI, Matt JONES, Luigi De RUSSIS, Naomi YAMASHITA, Neha KUMAR, Nicola J BIDWELL, Pejman MIRZA-BABAEI, Priya C KUMAR, Shaowen BARDZELL, Simone KRIGLSTEIN, Susan DRAY, Susanne BOLL, Stacy M BRANHAM and Tamara CLEGG. Equity Talks @SIGCHI. In CHI Conference on Human Factors in Computing Systems Extended Abstracts (CHI EA '22). New York, NY, USA: Association for Computing Machinery, 2022. Available from: https://dx.doi.org/10.1145/3491101.3516397.

KRIGLSTEIN, Simone, Anna Lisa MARTIN-NIEDECKEN, Josef SPJUT, Nicole B DAMEN, Selen TÜRKAY and Anders DRACHEN. Esports meets human-computer interaction. Interactions. ACM, 2022, vol. 29, No 3, p. 42-47. ISSN 1072-5520. Available from: https://dx.doi.org/10.1145/3524855.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL and Irena KOUTNÁ. Establishment of human embryonic stem cells for stem-cell therapies. In SY-STEM 2022, Vienna, Austria. 2022.

SIGCHI EXECUTIVE, Committe, Adriana S VIVACQUA, Andrew L KUN, Cale PASSMORE, Helena MENTIS, Josh ANDRES, Kashyap TODI, Luigi De RUSSIS, Matt JONES, Naomi YAMASHITA, Neha KUMAR, Nicola J BIDWELL, Pejman MIRZA-BABAEI, Priya C KUMAR, Shaowen BARDZELL, Simone KRIGLSTEIN, Stacy M BRANHAM, Susan DRAY, Susanne BOLL and Tamara CLEGG. Exploring Hybrid: A (hybrid) SIG to discuss hybrid conferences. In CHI Conference on Human Factors in Computing Systems Extended Abstracts (CHI EA '22). New York, NY, USA: Association for Computing Machinery, 2022. Available from: https://dx.doi.org/10.1145/3491101.3516405.

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JOCHECOVÁ, Kateřina, Michal ČERNÝ, Zdeněk STACHOŇ, Hana ŠVEDOVÁ, Natálie KÁČOVÁ, Jiří CHMELÍK, Vojtěch BRŮŽA, Ondřej KVARDA, Pavel UGWITZ, Alžběta ŠAŠINKOVÁ, Nicola Catherine FOŘTOVÁ and Čeněk ŠAŠINKA. Geography Education in a Collaborative Virtual Environment : A Qualitative Study on Geography Teachers. International Journal of Geo-Information. 2022, vol. 11, No 3, p. 1-15. ISSN 2220-9964. Available from: https://dx.doi.org/10.3390/ijgi11030180.

CHISALITA, Raluca, Markus MURTINGER and Simone KRIGLSTEIN. Grow Your Plant: A Plant-Based Game For Creating Awareness About Sustainability Behaviour by Using Renewable Energy. In CHI PLAY '22: Extended Abstracts of the 2022 Annual Symposium on Computer-Human Interaction in Play. Bremen, Germany: ACM, 2022, p. 177-182. ISBN 978-1-4503-9211-2. Available from: https://dx.doi.org/10.1145/3505270.3558344.

KRIGLSTEIN, Simone. HCI Meets Games. In ACM SIGCHI Symposium for HCI & Friends. 2022.

GIALLONGO, Sebastiano, Daniela REHAKOVA, Tommaso BIAGINI, Oriana LO RE, Priyanka RAINA, Gabriela LOCHMANOVÁ, Zbyněk ZDRÁHAL, Igor RESNICK, Pille PATA, Illar PATA, Martin MISTRIK, Joao Pedro DE MAGALHAES, Tommaso MAZZA, Irena KOUTNÁ and Manlio VINCIGUERRA. Histone Variant macroH2A1.1 Enhances Nonhomologous End Joining-dependent DNA Double-strand-break Repair and Reprogramming Efficiency of Human iPSCs. Stem Cells. OXFORD: OXFORD UNIV PRESS, 2022, vol. 40, No 1, p. 35-48. ISSN 1066-5099. Available from: https://dx.doi.org/10.1093/stmcls/sxab004.

SOURALOVÁ, Tereza, Daniela ŘEHÁKOVÁ, Lenka TESAŘOVÁ, Aleš HAMPL and Irena KOUTNÁ. Characterization of Clinical-Grade Stem Cells: Microscopic, Cellular, Molecular, and Functional Characterization of Stem Cells and Their Products According to Regulatory Requirements for FDA Approval. In Firdos Alam Khan. Stem Cell Production. 1st ed. Singapore: Springer, Singapore, 2022, p. 185-203. Biomedicine & Life Sciences. ISBN 978-981-16-7588-1. Available from: https://dx.doi.org/10.1007/978-981-16-7589-8_8.

WIESNER, David, Julian SUK, Sven DUMMER, David SVOBODA and Jelmer WOLTERINK. Implicit Neural Representations for Generative Modeling of Living Cell Shapes. Online. In Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li. International Conference on Medical Image Computing and Computer Assisted Intervention. Switzerland: Springer Nature Switzerland, 2022, p. 58-67. ISBN 978-3-031-16439-2. Available from: https://dx.doi.org/10.1007/978-3-031-16440-8_6.

GELETKA, Martin, Mikuláš BANKOVIČ, Dávid MELUŠ, Šárka ŠČAVNICKÁ, Michal ŠTEFÁNIK and Petr SOJKA. Information Extraction from Business Documents. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2022). Brno: Tribun EU, 2022, p. 35-46. ISBN 978-80-263-1752-4.

ECHEVERRI GIRALDO, Daniel Ricardo. Integrating Brechtian Concepts in the Design of a Tangible Narrative: The Case of “The Non-myth of the Noble Red”. Online. In Interactive Storytelling: 15th International Conference on Interactive Digital Storytelling, ICIDS 2022. Santa Cruz, CA, USA: Springer International Publishing, 2022, p. 383-394. ISBN 978-3-031-22297-9. Available from: https://dx.doi.org/10.1007/978-3-031-22298-6_23.

BALÁŽIA, Michal, Kateřina HLAVÁČKOVÁ-SCHINDLER, Petr SOJKA and Claudia PLANT. Interpretable Gait Recognition by Granger Causality. In Proceedings of 26th International Conference on Pattern Recognition, ICPR 2022. Los Alamitos, CA, USA: IEEE, 2022, p. 1069-1075. ISBN 978-1-6654-9062-7. Available from: https://dx.doi.org/10.1109/ICPR56361.2022.9956624.

MIKEŠ, Marek and Zdeněk ZÁHORA. Japanese Digital Games in Czech Media Discourse. Replaying Japan. Japonsko: Ritsumeikan Center for Game Studies, 2022, vol. 4, 07/2022, p. 47-56. ISSN 2433-8060. Available from: https://dx.doi.org/10.34382/00017636.

KRIGLSTEIN, Simone. Keynote - Bullying Is NOT a Game – But Games Can Help Preventing It. In FROG – Future and Reality of Gaming 2022. 2022.

TOVARŇÁK, Daniel, Martin HAMERNÍK and Vít RUSŇÁK. Kolaborativní prostředí pro členy bezpečnostních týmů (Collaborative environment for security team members). 2022.

PLANAS IGLESIAS, Joan, Filip OPÁLENÝ, Pavol ULBRICH, Jan ŠTOURAČ, Zainab Kemi SANUSI, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Andrea SMITH, Jan BYŠKA, Jiří DAMBORSKÝ, Barbora KOZLÍKOVÁ and David BEDNÁŘ. LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic acids research. Oxford: Oxford University Press, 2022, vol. 50, W1, p. "W465"-"W473", 9 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkac249.

NOVOTNA, Lenka, Zdenek CHLUP, Josef JAROŠ, Klára ČÁSTKOVÁ, Daniel DRDLIK, Jakub POSPÍŠIL, Aleš HAMPL, Irena KOUTNÁ and Jaroslav CIHLAR. Macroporous bioceramic scaffolds based on tricalcium phosphates reinforced with silica: microstructural, mechanical, and biological evaluation. JOURNAL OF ASIAN CERAMIC SOCIETIES. ABINGDON: TAYLOR & FRANCIS LTD, 2022, vol. 10, No 2, p. 356-369. ISSN 2187-0764. Available from: https://dx.doi.org/10.1080/21870764.2022.2053278.

REGAL, Georg, Jakob Carl UHL, Anna GERHARDUS, Stefan SUETTE, Elisabeth FRANKUS, Julia SCHMID, Simone KRIGLSTEIN and Manfred TSCHELIGI. Marcus or Mira - Investigating the Perception of Virtual Agent Gender in Virtual Reality Role Play-Training. In 28th ACM Symposium on Virtual Reality Software and Technology (VRST '22). USA: ACM, 2022, p. 1-11. ISBN 978-1-4503-9889-3. Available from: https://dx.doi.org/10.1145/3562939.3565629.

NOVOTNÝ, Vít, Dominik REHÁK, Michal HOFTICH and Tereza VRABCOVÁ. Markdown 2.15.0: What's new? TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2022, roč. 43, No 1, 6 pp. ISSN 0896-3207. Available from: https://dx.doi.org/10.47397/tb/43-1/tb133novotny-markdown.

ŠTEFÁNIK, Michal. Methods for Estimating and Improving Robustness of Language Models. Online. In Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies: Student Research Workshop. Seattle, Washington + Online: Association for Computational Linguistics, 2022, p. 44-51. ISBN 978-1-7138-5621-4. Available from: https://dx.doi.org/10.18653/v1/2022.naacl-srw.6.

GÖBL, Barbara, Suzana JOVICIC, Natalie DENK, Simon WIMMER and Simone KRIGLSTEIN. More Than Just Gameplay: Making a Case for “Let’s Plays” in Education. In Extended Abstracts of the 2022 Annual Symposium on Computer-Human Interaction in Play (CHI PLAY '22). Bremen, Germany: ACM, 2022, p. 75-80. ISBN 978-1-4503-9211-2. Available from: https://dx.doi.org/10.1145/3505270.3558327.

PLANAS IGLESIAS, Joan, Filip OPÁLENÝ, Pavol ULBRICH, Jan ŠTOURAČ, Zainab Kemi SANUSI, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, A. SCHENKMAYEROVÁ, Jan BYŠKA, Jiří DAMBORSKÝ, Barbora KOZLÍKOVÁ and David BEDNÁŘ. Nástroj LoopGrafter (LoopGrafter software tool). 2022.

LIPOVÝ, Břetislav, Jakub HOLOUBEK, Martin KNOZ, Eva HORÁLKOVÁ, Martin HLADÍK, Irena KOUTNÁ and Lucy VOJTOVÁ. Od regenerace dermis k regeneraci kůže. In Laboratorní a klinické aspekty regenerativní medicíny. 2022. ISBN 978-80-01-07052-9.

BRÁZDIL, Tomáš, David KLAŠKA, Antonín KUČERA, Vít MUSIL, Petr NOVOTNÝ and Vojtěch ŘEHÁK. On-the-fly Adaptation of Patrolling Strategies in Changing Environments. Online. In James Cussens, Kun Zhang. Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence, UAI 2022. Neuveden: Proceedings of Machine Learning Research, 2022, p. 244-254. ISBN 978-1-7138-6329-8.

LANG, Matěj, Čeněk ŠAŠINKA, Zdeněk STACHOŇ and Jiří CHMELÍK. Ověřené technické řešení - propojení AR brýlí se senzory pro piloty ULL (Technical Solution - Interconnection between the Sensors and AR glasses for Pilots of Ultralight Aircrafts). 2022.

PORTEŠOVÁ, Šárka, Eva NOVÁKOVÁ, Růžena BLAŽKOVÁ, Michal JABŮREK, Ondřej STRAKA, Michal RŮŽIČKA, Matěj SMETANA, Jaroslav TOČÍK, Jana UNČOVSKÁ, Kateřina KREPSOVÁ, Ondřej DVOŘÁK, Ondřej VORÁČ, Jan KOTTMAN, Zdeněk NOVÁK, Petra BUŠKOVÁ, Jindřiška SVOBODOVÁ, Eva MALACHOVÁ and Tereza HRSTKOVÁ. Podporujeme nadané prvňáčky (We support gifted pupils in the first grades). 2022.

MIKEŠ, Marek and Zdeněk ZÁHORA. Representation of national game productions in Czech gaming press: Japanese games in global context. In DiGRA 2022: The 14th Digital Games Research Association Conference. 2022.

ULMAN, Vladimír and David WIESNER. Review of cell image synthesis for image processing. In Ninon Burgos, David Svoboda. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Neuveden: Elsevier, 2022, p. 447-489. The MICCAI Society book Series. ISBN 978-0-12-824349-7. Available from: https://dx.doi.org/10.1016/B978-0-12-824349-7.00028-1.

SIGCHI EXECUTIVE, Committe, Adriana S VIVACQUA, Andrew L KUN, Cale PASSMORE, Helena MENTIS, Josh ANDRES, Kashyap TODI, Luigi De RUSSIS, Matt JONES, Naomi YAMASHITA, Neha KUMAR, Nicola J BIDWELL, Pejman MIRZA-BABAEI, Priya C KUMAR, Shaowen BARDZELL, Simone KRIGLSTEIN, Stacy M BRANHAM, Susan DRAY, Susanne BOLL and Tamara CLEGG. SIGCHI Turns 40: Honoring the Past, Celebrating the Present, and Envisioning the Next 40. In CHI Conference on Human Factors in Computing Systems Extended Abstracts (CHI EA '22). New York, NY, USA: Association for Computing Machinery, 2022. Available from: https://dx.doi.org/10.1145/3491101.3516406.

FRAUNE, Marlena R, Takanori KOMATSU, Harrison R PREUSSE, Danielle Kathryn LANGLOIS, AU, Rachel H Y, Katrina LING, Shogo SUDA, Kiko NAKAMURA and Katherine M TSUI. Socially facilitative robots for older adults to alleviate social isolation: A participatory design workshop approach in the US and Japan. Frontiers in psychology. LAUSANNE: Frontiers Media, 2022, vol. 13. ISSN 1664-1078. Available from: https://dx.doi.org/10.3389/fpsyg.2022.904019.

DRAŠAR, Martin, Ádám RUMAN and Vít RUSŇÁK. SW pro dynamickou verifikaci bezpečnostních opatření (SW for dynamic verification of security measures). 2022.

CHALUPA, Marek, Jakub NOVÁK, Marek TRTÍK, Lukáš ZAORAL and Jan STREJČEK. Symbiotic 9.1. 2022.

ECHEVERRI GIRALDO, Daniel Ricardo. Tangible Narrative: The Intersection of Performance, Interactivity, and Narrative—A Design Case. Online. In Proceedings of ETIS 2022. Toulouse, France: CEUR Workshop Proceedings, 2022, p. 1-8. ISSN 1613-0073.

ŘEHÁKOVÁ, Daniela, Aleš HAMPL, Miloslava FOJTOVÁ and Irena KOUTNÁ. Telomere length in human pluripotent stem cells. In SY-Stem 2022. 2022.

SOJKA, Petr, Aleš HORÁK, Ivan KOPEČEK and Karel PALA. Text, Speech and Dialogue: 25th International Conference TSD 2022, Brno, Czech Republic, September 6-9, 2022. Edited by Sojka P., Horák A., Kopeček I., Pala K. prvni. Berlin Heidelberg: Springer Verlag, 2022, 540 pp. ISBN 978-3-031-16269-5. Available from: https://dx.doi.org/10.1007/978-3-031-16270-1.

SOURALOVÁ, Tereza, Daniela ŘEHÁKOVÁ, Michal JEŠETA, Lenka TESAŘOVÁ, Jindřich BERÁNEK, Pavel VENTRUBA, Aleš HAMPL and Irena KOUTNÁ. The Manufacture of Xeno- and Feeder-Free Clinical-Grade Human Embryonic Stem Cell Lines: First Step for Cell Therapy. International Journal of Molecular Sciences. Basel, Switzerland: MDPI, 2022, vol. 23, No 20, p. 1-15. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms232012500.

ECHEVERRI GIRALDO, Daniel Ricardo. The Non-Myth of the Noble Red: Exploring Brechtian Principles of Storytelling and Performance in the Authoring of a Tangible Narrative. Online. In C&C '22: Creativity and Cognition. Venice, Italy: Association for Computing Machinery, 2022, p. 520-525. ISBN 978-1-4503-9327-0. Available from: https://dx.doi.org/10.1145/3527927.3535207.

POKOJNÁ, Hana, Caroline EROLIN and Christopher HENSTRIDGE. The transparent minds: methods of creation of 3D digital models from patient specific data. Journal of Visual Communication in Medicine. 2022, vol. 45, No 2, p. 17-31. ISSN 1745-3054. Available from: https://dx.doi.org/10.1080/17453054.2021.2008230.

ŠČAVNICKÁ, Šárka, Michal ŠTEFÁNIK, Marek KADLČÍK, Martin GELETKA and Petr SOJKA. Towards General Document Understanding through Question Answering. In Recent Advances in Slavonic Natural Language Processing (RASLAN 2022). Recent Advances in Slavonic. Brno: Tribun EU, 2022, p. 181-188. ISBN 978-80-263-1752-4.

BÖRÖNDY, Ádám, Katarína FURMANOVÁ and Renata Georgia RAIDOU. Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy. Online. In Renata G. Raidou, Björn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu. Eurographics Workshop on Visual Computing for Biology and Medicine. Neuveden: The Eurographics Association, 2022, p. 65-69. ISBN 978-3-03868-177-9. Available from: https://dx.doi.org/10.2312/vcbm.20221188.

KUŤÁK, David, Erik POPPLETON, Haichao MIAO, Petr ŠULC and Ivan BARIŠIĆ. Unified Nanotechnology Format: One Way to Store Them All. Molecules. Basel: MDPI, 2022, vol. 27, No 1, p. 1-17. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules27010063.

GERDENITSCH, Cornelia, Matthias WEINHOFER, Jaison PUTHENKALAM and Simone KRIGLSTEIN. Upward Influence Tactics: Playful Virtual Reality Approach for Analysing Human Multi-robot Interaction. In Entertainment Computing – ICEC 2022: 21st IFIP TC 14 International Conference. Bremen, Germany: Springer, 2022, p. 76-88. ISBN 978-3-031-20211-7. Available from: https://dx.doi.org/10.1007/978-3-031-20212-4_6.

PAČÍNKOVÁ, Anna and Vlad POPOVICI. Using empirical biological knowledge to infer regulatory networks from multi-omics data. BMC Bioinformatics. London: BioMed Central, 2022, vol. 23, No 1, p. 1-23. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-022-04891-9.

LING, Katrina M, Danielle Kathryn LANGLOIS, Harrison PREUSSE, Marlena FRAUNE and Katherine M TSUI. Using Robots to Facilitate and Improve Social Interaction Between Humans: An Exploratory Qualitative Study with Adults 50+ in the US and Japan. In 2022 ACM/IEEE International Conference on Human-Robot Interaction. Sapporo, Hokkaido, Japan: IEEE Press, 2022, p. 885-889. Available from: https://dx.doi.org/10.1109/HRI53351.2022.9889559.

NEČASOVÁ, Tereza, Ninon BURGOS and David SVOBODA. Validation and evaluation metrics for medical and biomedical image synthesis. In Ninon Burgos, David Svoboda. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Neuveden: Elsevier, 2022, p. 573-600. The MICCAI Society book Series. ISBN 978-0-12-824349-7. Available from: https://dx.doi.org/10.1016/B978-0-12-824349-7.00032-3.

KRIGLSTEIN, Simone. Vice-President for Membership and Communication. ACM SIGCHI, 2022 - 2024.

BUDÍKOVÁ, Petra, Daniel KLEPÁČ, Dávid RUSNÁK and Milan SLOVÁK. Visual Exploration of Human Motion Data. Online. In Skopal, T., Falchi, F., Lokoč, J., Sapino, M.L., Bartolini, I., Patella, M. 15th International Conference on Similarity Search and Applications (SISAP 2022). Neuveden: Springer, Cham, 2022, p. 64-71. ISBN 978-3-031-17848-1. Available from: https://dx.doi.org/10.1007/978-3-031-17849-8_6.

KUŤÁK, David, Matias Nicolás SELZER, Jan BYŠKA, María Luján GANUZA, Ivan BARIŠIĆ, Barbora KOZLÍKOVÁ and Haichao MIAO. Vivern – A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Transactions on Visualization and Computer Graphics. 2022, vol. 28, No 12, p. 4825-4838. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2021.3106328.

NOVOTNÝ, Vít. Vysokoúrovňové jazyky pro TeX (High-Level Languages for TeX). Zpravodaj CSTUG. Brno: CSTUG, 2022, vol. 32, 1-4, p. 25-48. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2022-1-4/35.

NOVOTNÝ, Vít, Michal ŠTEFÁNIK, Eniafe Festus AYETIRAN, Petr SOJKA and Radim ŘEHŮŘEK. When FastText Pays Attention: Efficient Estimation of Word Representations using Constrained Positional Weighting. Journal of Universal Computer Science. New York, USA: J.UCS Consortium, 2022, vol. 28, No 2, p. 181-201. ISSN 0948-695X. Available from: https://dx.doi.org/10.3897/jucs.69619.

NOVOTNÝ, Vít and Aleš HORÁK. When Tesseract Meets PERO : Open-Source Optical Character Recognition of Medieval Texts. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Sixteenth Workshop on Recent Advances in Slavonic Natural Languages Processing, RASLAN 2022. Brno: Tribun EU, 2022, p. 157-161. ISBN 978-80-263-1752-4.

SOJKA, Petr. XXII. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XXII. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2022.

HERMAN, Lukáš, Vojtěch JUŘÍK, Dajana SNOPKOVÁ, Jiří CHMELÍK, Pavel UGWITZ, Zdeněk STACHOŇ, Čeněk ŠAŠINKA and Tomáš ŘEZNÍK. A Comparison of Monoscopic and Stereoscopic 3D Visualizations: Effect on Spatial Planning in Digital Twins. Remote Sensing. MDPI, 2021, vol. 13, No 15, p. 1-21. ISSN 2072-4292. Available from: https://dx.doi.org/10.3390/rs13152976.

BANKOVIČ, Mikuláš, Vít NOVOTNÝ and Petr SOJKA. Application of Super-Resolution Models in Optical Character Recognition of Czech Medieval Texts. In Horák, Rychlý, Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2021). Brno: Tribun EU, 2021, p. 11-18. ISBN 978-80-263-1670-1.

VENTRUBA, Pavel, Jana ŽÁKOVÁ, Michal JEŠETA, Eva LOUSOVÁ, Aleš HAMPL, Tereza SOURALOVÁ and Irena KOUTNÁ. Aspekty výběru embryí a jejich příprava pro vznik lidských embryonálních kmenových buněk určených k humánní terapii (Aspects of embryo selection and their preparation for the formation of human embryonic stem cells intended for human therapy). Česká gynekologie. Praha: Česká lékařská společnost J. E. Purkyně, 2021, vol. 86, No 1, p. 5-10. ISSN 1210-7832. Available from: https://dx.doi.org/10.48095/cccg20215.

KUČÍREK, Martin, Leoš BENÁK, Jan KOCANDA, Milan FILIPOVIČ, Jan SKLENSKÝ, Libor STREIT, Lenka VEVERKOVÁ, Irena KOUTNÁ, Jaroslav CIHLÁŘ, Aleš HAMPL and Martin REPKO. Bioarteficiální 3D štěp pro meziobratlovou fúzi páteře (Bio artificial 3D bone graft for intervertebral spinal fusion). 2021.

LUKJANOV, Viktor, Irena KOUTNÁ and Pavel ŠIMARA. CAR T-Cell Production Using Nonviral Approaches. Journal of Immunology Research. London: Hindawi, 2021, vol. 2021, Mar 27, p. 1-9. ISSN 2314-8861. Available from: https://dx.doi.org/10.1155/2021/6644685.

LÍŠKA, Martin, Dávid LUPTÁK, Vít STARÝ NOVOTNÝ, Michal RŮŽIČKA, Boris SHMINKE, Petr SOJKA, Michal ŠTEFÁNIK and Makarius WENZEL. CICM'21 Systems Entries. Online. In 978-3-030-81097-9. INTELLIGENT COMPUTER MATHEMATICS (CICM 2021). CHAM: SPRINGER INTERNATIONAL PUBLISHING AG, 2021, p. 245-248. ISBN 978-3-030-81096-2. Available from: https://dx.doi.org/10.1007/978-3-030-81097-9_20.

DAMBORSKÝ, Jiří, David BEDNÁŘ, Zbyněk PROKOP, Martin MAREK, Stanislav MAZURENKO, Jan ŠTOURAČ, Sérgio Manuel MARQUES, Gabriela Filipa FONSECA PINTO, Joan PLANAS IGLESIAS, Miloš MUSIL, Jiří HON, Ondřej VÁVRA, Rayyan Tariq KHAN, Jiří FILIPOVIČ and Barbora KOZLÍKOVÁ. Computational enzyme design for metabolic engineering. In The 45th FEBS Congress. 2021. ISSN 2211-5463.

BYŠKA, Jan, Krone MICHAEL and Sommer BJÖRN. Computers & Graphics: Special Section on Molecular Graphics and Visual Analysis of Molecular Data. Elsevier, 2021.

GÖBL, Barbara, Simone KRIGLSTEIN and Helmut HLAVACS. Conversational Interfaces in Serious Games: Identifying Potentials and Future Research Directions based on a Systematic Literature Review. In Proceedings of the 13th International Conference on Computer Supported Education - Volume 1: CSEDU. SciTePress, 2021. ISBN 978-989-758-502-9. Available from: https://dx.doi.org/10.5220/0010447301080115.

LEJDAROVÁ, Hana, Rita PACASOVA, Lenka TESAROVA, Irena KOUTNA, Nadezda POLOKOVA, Simona MICHLICKOVA and Martin DOLEČEK. Cryopreserved buffy-coat-derived platelets reconstituted in platelet additive solution: A safe and available product with sufficient haemostatic effectiveness. Doleček Martin. TRANSFUSION AND APHERESIS SCIENCE. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2021, vol. 60, No 3, p. 1-7. ISSN 1473-0502. Available from: https://dx.doi.org/10.1016/j.transci.2021.103110.

ŠTEFÁNIK, Michal and Jan NEHYBA. Česko-Anglický reflektivní dataset (CEReD) (Czech-English Reflective Dataset (CEReD)). 2021. Available from: https://dx.doi.org/11372/LRT-3573.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL and Irena KOUTNÁ. Derivace lidských embryonálních kmenových buněk za definovaných podmínek (Derivation of human embryonic stem cells under defined conditions). In 31. Kongres asistované reprodukce, Brno, Czech Republic. 2021. ISBN 978-80-907696-4-9.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL and Irena KOUTNÁ. Derivation and characterization of clinical-grade human embryonic stem cells. In XII. international conference „Bioimplantologie 2021“, Mikulov, Czech Republic. 2021. ISBN 978-80-01-06886-1.

AYETIRAN, Eniafe Festus, Petr SOJKA and Vít NOVOTNÝ. EDS-MEMBED: Multi-sense embeddings based on enhanced distributional semantic structures via a graph walk over word senses. Knowledge-Based Systems. Elsevier, 2021, vol. 2021, No 219, p. 106902-106915. ISSN 0950-7051. Available from: https://dx.doi.org/10.1016/j.knosys.2021.106902.

NOVOTNÝ, Vít, Michal ŠTEFÁNIK, Dávid LUPTÁK, Martin GELETKA, Petr ZELINA and Petr SOJKA. Ensembling Ten Math Information Retrieval Systems: MIRMU and MSM at ARQMath 2021. Online. In Guglielmo Faggioli. CEUR Workshop Proceedings. Bucharest, Romania: M. Jeusfeld c/o Redaktion Sun SITE, Informatik V, RWTH Aachen, 2021, p. 82-106. ISSN 1613-0073.

ČEJKA, Jan, Marino MANGERUGA, Fabio BRUNO, Dimitrios SKARLATOS and Fotios LIAROKAPIS. Evaluating the Potential of Augmented Reality Interfaces for Exploring Underwater Historical Sites. IEEE Access. Piscataway: IEEE Xplore Digital Library, 2021, vol. 9, No 9355135, p. 45017-45031. ISSN 2169-3536. Available from: https://dx.doi.org/10.1109/ACCESS.2021.3059978.

ČEJKA, Jan, Jiří CHMELÍK and Fotios LIAROKAPIS. Exploring tilting methods for typing under water. Multimedia Tools and Applications. Springer London, 2021, vol. 20, No 80, p. 31085-31103. ISSN 1380-7501. Available from: https://dx.doi.org/10.1007/s11042-020-09305-7.

MADARAS, Martin, Martin STUCHLIK and Matúš TALČÍK. Fast Bridgeless Pyramid Segmentation for Organized Point Clouds. Online. In Farinella, GM Radeva, P Braz, J Bouatouch, K. VISAPP: PROCEEDINGS OF THE 16TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS - VOL. 4: VISAPP. SETUBAL: SCITEPRESS, 2021, p. 205-210. ISBN 978-989-758-488-6. Available from: https://dx.doi.org/10.5220/0010163802050210.

KOZLÍKOVÁ, Barbora, Michael KRONE, Kay NIESELT, Renata RAIDOU and Noeska SMIT. Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020. Elsevier ScienceDirect, 2021. Available from: https://dx.doi.org/10.1016/j.cag.2021.08.004.

MIZEROVÁ, Alena, Lea NOVOTNÁ, Radka VYSKOČILOVÁ and Radek GOMOLA. Freedom in the Mirror of University History. Dedicated to the 100th anniversary of the founding of Masaryk University and to all authors in its history who were silenced. 1st ed. Brno: Masarykova univerzita, 2021, 155 pp. ISBN 978-80-210-9743-8.

MIZEROVÁ, Alena, Lea NOVOTNÁ, Radka VYSKOČILOVÁ and Radek GOMOLA. Freedom in the Mirror of University History. Dedicated to the 100th anniversary of the founding of Masaryk University and to all authors in its history who were silenced. Online. 1., elektronické vyd. Brno: Masarykova univerzita, 2021, 156 pp. ISBN 978-80-210-9744-5.

KOUŘIL, David, Tobias ISENBERG, Barbora KOZLÍKOVÁ, Miriah MEYER, Eduard GROELLER and Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Transactions on Visualization and Computer Graphics. 2021, vol. 27, No 8, p. 3493-3504. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.2975583.

SABANDO, María Virginia, Pavol ULBRICH, Matías SELZER, Jan BYŠKA, Jan MIČAN, Ignacio PONZONI, Axel J. SOTO, María Luján GANUZA and Barbora KOZLÍKOVÁ. ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, vol. 27, No 2, p. 891-901. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.3030438.

NOVOTNÝ, Vít. Interpretable Document Representations for Fast and Accurate Retrieval of Mathematical Information. Online. In SIGIR '21: Proceedings of the 44th International ACM SIGIR Conference on Research and Development in Information Retrieval. ACM, 2021, p. 2705-2705. ISBN 978-1-4503-3621-5. Available from: https://dx.doi.org/10.1145/3404835.3463269.

HERMOSILLA CASAJÚS, Pedro, Marco SCHÄFER, Matěj LANG, Gloria FACKELMANN, Pere-Pau VÁZQUEZ ALCOCER, Barbora KOZLÍKOVÁ, Michael KRONE, Tobias RITSCHEL and Timo ROPINSKI. Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures. In International Conference on Learning Representations (ICLR). 2021.

GÖBL, Barbara, Suzana JOVICIC, Natalie DENK and Simone KRIGLSTEIN. Let’s Play - Professional Views on Barriers and Potentials in Digital Gaming and E-Sports. In Extended Abstracts of the 2021 Annual Symposium on Computer-Human Interaction in Play (CHI PLAY '21. USA: ACM, 2021, p. 314-319. ISBN 978-1-4503-8356-1. Available from: https://dx.doi.org/10.1145/3450337.3483455.

NOVOTNÝ, Vít. Markdown 2.10.0: LaTeX themes & snippets, two flavors of comments, and LuaMetaTeX. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2021, roč. 42, No 2, 8 pp. ISSN 0896-3207. Available from: https://dx.doi.org/10.47397/tb/42-2/tb131novotny-markdown.

NOVOTNÝ, Vít. Markdown 2.10.0: LaTeXová témata a snippety (Markdown 2.10.0: LaTeX Themes & Snippets). Zpravodaj CSTUG. Brno: CSTUG, 2021, vol. 31, 1-4, p. 76-82. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2021-1-4/76.

ŠAŠINKA, Čeněk, Jiří CHMELÍK, Alžběta ŠAŠINKOVÁ and Zdeněk STACHOŇ. Metodika vzdělávání pomocí aplikace VR-Pilots pro potřeby základního kurzu a piloty začátečníky (Education procedure for paraglkding basic course and pilots beginners based on VR-pilots applicatioin). 2021.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Irena KOUTNÁ and Aleš HAMPL. MUES 6 - Linie lidských embryonálních kmenových buněk (MUES 6 - Human embryonic stem cell line). In XXIV. Biologické dny, Brno, Czech Republic. 2021.

PREISLER, Jan, Markéta MACHÁLKOVÁ, Barbora ADAMOVÁ, Jarmila NAVRÁTILOVÁ, Marek STIBOREK, Stanislava MELIORISOVÁ, Jiří KROUPA, Pavel HOUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Katarzyna Anna RADASZKIEWICZ, Adam PRUŠKA, Viktor KANICKÝ, Michal KOZUBEK and Jan ŠMARDA. Multimodal Imaging of 3D Cell Aggregates. In MSB 2021. 2021.

SOJKA, Petr and Ondřej SOJKA. New Czechoslovak Hyphenation Patterns, Word Lists, and Workflow. TUGboat: The Communications of the TeX Users Group. San Francisco, USA: TUG, 2021, vol. 42, No 2, p. 152-158. ISSN 0896-3207. Available from: https://dx.doi.org/10.47397/tb/42-2/tb131sojka-czech.

ŠTEFÁNIK, Michal. On Eliminating Inductive Biases of Deep Language Models. In ALPS 2021. 2021.

NOVOTNÝ, Vít, Eniafe Festus AYETIRAN, Dalibor BAČOVSKÝ, Dávid LUPTÁK, Michal ŠTEFÁNIK and Petr SOJKA. One Size Does Not Fit All: Finding the Optimal Subword Sizes for FastText Models across Languages. In Mitkov, Ruslan and Angelova, Galia. Proceedings of the International Conference on Recent Advances in Natural Language Processing (RANLP 2021). Varna, Bulgaria: INCOMA Ltd., 2021, p. 1068-1074. ISBN 978-954-452-072-4. Available from: https://dx.doi.org/10.26615/978-954-452-072-4_120.

GÖBEL, Barbara, Dayana HRISTOVA, Suzana JOVICIC, Simone KRIGLSTEIN and Helmut HLAVACS. OutSmart! Evaluation of a Serious Game and its Conversational Interface for Reflective Social Media Use. Online. In Game On 2021. Aveiro, Portugal: EUROSIS, 2021. ISBN 978-94-92859-17-4.

NOVOTNÝ, Vít. Overleaf: Kolaborativní webový editor LaTeXu (Overleaf, Collaborative Online LaTeX Editor). Zpravodaj CSTUG. Brno: CSTUG, 2021, vol. 31, 1-4, p. 3-8. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2021-1-4/3.

FURMANOVÁ, Katarína, Ludvig P MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Sara PILSKOG and Renata G RAIDOU. PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support. Computers & Graphics. Elsevier Science, 2021, vol. 97, April, p. 126-138. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2021.04.010.

GIALLONGO, Sebastiano, Daniela ŘEHÁKOVÁ, Marco RAFFAELE, Oriana LO RE, Irena KOUTNÁ and Manlio VINCIGUERRA. Redox and Epigenetics in Human Pluripotent Stem Cells Differentiation. ANTIOXIDANTS & REDOX SIGNALING. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, vol. 34, No 4, p. 335-349. ISSN 1523-0864. Available from: https://dx.doi.org/10.1089/ars.2019.7983.

ŠTEFÁNIK, Michal, Vít NOVOTNÝ and Petr SOJKA. Regressive Ensemble for Machine Translation Quality Evaluation. Online. In Loïc Barrault et al. Proceedings of EMNLP 2021 Sixth Conference on Machine Translation (WMT 21). Online and Punta Cana, Dominican Republi: ACL, 2021, p. 1041-1048. ISBN 978-1-954085-94-7.

TUYISHIME, Barakura Thierry and Simone KRIGLSTEIN. Rrrring & Play: Using a Rotary Dial Telephone as Game Controller. In Extended Abstracts of the 2021 Annual Symposium on Computer-Human Interaction in Play. USA: ACM, 2021, p. 382-385. ISBN 978-1-4503-8356-1. Available from: https://dx.doi.org/10.1145/3450337.3483451.

SVOBODA, David, Ninon BURGOS, Jelmer M. WOLTERINK and Can ZHAO. Simulation and Synthesis in Medical Imaging. 1st ed. Cham: Springer, 2021, 154 pp. ISBN 978-3-030-87591-6. Available from: https://dx.doi.org/10.1007/978-3-030-87592-3.

KRIGLSTEIN, Simone, Anna Lisa MARTIN-NIEDECKEN, Laia Turmo VIDAL, Madison KLARKOWSKI, Katja ROGERS, Selen TURKAY, Magy Seif EL-NASR, Elena Márquez SEGURA, Anders DRACHEN and Perttu HÄMÄLÄINEN. Special Interest Group: The Present and Future of Esports in HCI. In CHI Conference on Human Factors in Computing Systems (CHI EA '21). Association for Computing Machinery, 2021. Available from: https://dx.doi.org/10.1145/3411763.3450402.

ŠKOLA, Filip and Fotios LIAROKAPIS. Study of Full-body Virtual Embodiment Using noninvasive Brain Stimulation and Imaging. International Journal of Human-Computer Interaction. Philadelphia: Taylor & Francis, 2021, vol. 37, No 12, p. 1116-1129. ISSN 1044-7318. Available from: https://dx.doi.org/10.1080/10447318.2020.1870827.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Ivana ŤAPUCHOVÁ, J. CELEROVA and Irena KOUTNÁ. T-Cell Activation: Post-Infection Diagnostic Tool for COVID-19. Folia biologica. Praha: Institute of Molecular Genetics, 2021, vol. 67, No 1, p. 16-27. ISSN 0015-5500.

ČAPEK, Martin, Michaela BLAŽÍKOVÁ, Ivan NOVOTNÝ, Helena CHMELOVÁ, David SVOBODA, Barbora RADOCHOVÁ, Jiří JANÁČEK and Ondrej HORVÁTH. The Wavelet-Based Denoising Of Images in Fiji, With Example Applications in Structured Illumination Microscopy. Image Analysis & Stereology. International Society for Stereology & Image Analysis, 2021, vol. 40, No 1, p. 3-16. ISSN 1580-3139. Available from: https://dx.doi.org/10.5566/ias.2432.

MELNIKOVA, Aleksandra and Petr MATULA. Topology Preserving Segmentation Fusion for Cells with Complex Shapes. Online. In The IEEE International Symposium on Biomedical Imaging. Nice: IEEE, 2021, p. 204-207. ISBN 978-1-6654-1246-9. Available from: https://dx.doi.org/10.1109/ISBI48211.2021.9433867.

ŠTEFÁNIK, Michal and Petr SOJKA. Towards Domain Robustness of Neural Language Models. In Horák, Rychlý, Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2021). Brno: Tribun EU, 2021, p. 91-103. ISBN 978-80-263-1670-1.

KOZLOVSKÝ, Martin, David WIESNER and David SVOBODA. Transfer Learning in Optical Microscopy. Online. In Svoboda D., Burgos N., Wolterink J., Zhao C. Simulation and Synthesis in Medical Imaging. LNCS 12965. Neuveden: Springer, 2021, p. 77-86. ISBN 978-3-030-87591-6. Available from: https://dx.doi.org/10.1007/978-3-030-87592-3_8.

FRANCOVÁ, Jana. videomapping BRNO - MINSK (video mapping BRNO - MINSK). 2021.

ZÁKOPČANOVÁ, Kristína, Marko ŘEHÁČEK, Jozef BÁTRNA, Daniel PLAKINGER, Sergej STOPPEL and Barbora KOZLÍKOVÁ. Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, vol. 27, No 2, p. 881-890. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.3030356.

BRŮŽA, Vojtěch, Jan BYŠKA, Jan MIČAN and Barbora KOZLÍKOVÁ. VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality. COMPUTERS & GRAPHICS-UK. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2021, vol. 98, August 2021, p. 280-292. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2021.06.009.

CHMELÍK, Jiří, Čeněk ŠAŠINKA, Zdeněk STACHOŇ, Patrik KALAMÁR, Šimon BÔRIK and Ondřej KVARDA. VR-pilots. 2021.

LUPTÁK, Dávid, Vít NOVOTNÝ, Michal ŠTEFÁNIK and Petr SOJKA. WebMIaS on Docker: Deploying Math-Aware Search in a Single Line of Code. In Fairouz Kamareddine and Claudio Sacerdotti-Coen. Intelligent Computer Mathematics: 14th International Conference, CICM 2021, Timisoara, Romania, July 26–31, 2021, Proceedings. LNAI 12833. Timisoara, Romania: Springer, 2021, p. 159-164. ISBN 978-3-030-81096-2. Available from: https://dx.doi.org/10.1007/978-3-030-81097-9_13.

WALLNER, Günter, Marnix van WIJLAND, Regina BERNHAUPT and Simone KRIGLSTEIN. What Players Want: Information Needs of Players on Post-Game Visualizations. Online. In CHI Conference on Human Factors in Computing Systems (CHI '21). New York: Association for Computing Machinery, 2021, p. 1-13. ISBN 978-1-4503-8096-6. Available from: https://dx.doi.org/10.1145/3411764.3445174.

NOVOTNÝ, Vít, Kristýna SEIDLOVÁ, Tereza VRABCOVÁ and Aleš HORÁK. When Tesseract Brings Friends: Layout Analysis, Language Identification, and Super-Resolution in the Optical Character Recognition of Medieval Texts. In Horák, Rychlý, Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2021). Brno: Tribun EU, 2021, p. 29-39. ISBN 978-80-263-1670-1.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL and Irena KOUTNÁ. Xeno- and feeder-free derivation of two sex-discordant sibling lines of human embryonic stem cells. Stem Cell Research. Amsterdam: Elsevier, 2021, vol. 57, December 2021, p. 1-4. ISSN 1873-5061. Available from: https://dx.doi.org/10.1016/j.scr.2021.102574.

SOJKA, Petr. XXI. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XXI. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2021.

ČEJKA, Jan, Attila ZSÍROS and Fotios LIAROKAPIS. A hybrid augmented reality guide for underwater cultural heritage sites. Personal and Ubiquitous Computing. Springer London, 2020, vol. 24, No 6, p. 815-828. ISSN 1617-4909. Available from: https://dx.doi.org/10.1007/s00779-019-01354-6.

FERKOVÁ, Zuzana, Petra URBANOVÁ, Dominik ČERNÝ, Marek ŽUŽI and Petr MATULA. Age and gender-based human face reconstruction from single frontal image. Multimedia Tools and Applications. Kluwer Academic Publishers, 2020, vol. 79, 5-6, p. 3217-3242. ISSN 1380-7501. Available from: https://dx.doi.org/10.1007/s11042-018-6869-5.

ŠUJAKOVÁ, Lenka, Jiří PAŘENICA, Jiří HLÁSENSKÝ, Miloš KEŘKOVSKÝ, Tomáš ANDRAŠINA, Zdeněk ŠILHART and Petr KALA. Akutní končetinová ischemie při konkomitantní systémové a plicní embolizaci (Acute limb ischemia in concomitant systemic and pulmonary embolization). Cor et Vasa Case Reports. Brno: Česká kardiologická společnost, z. s., 2020, vol. 2020, No 3, p. 73-78. ISSN 2571-0648.

GRAMMALIDIS, Nikos, Iris KICO and Fotios LIAROKAPIS. Analysis of Human Motion Based on AI Technologies: Applications for Safeguarding Folk Dance Performances. Online. In Androniki Kavoura, Efstathios Kefallonitis, Prokopios Theodoridis. Strategic Innovative Marketing and Tourism. Not Specified: Springer, Cham, 2020, p. 321-329. ISBN 978-3-030-36125-9. Available from: https://dx.doi.org/10.1007/978-3-030-36126-6_35.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA and Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant). 2020.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Barbora KOZLÍKOVÁ, Vladimír MÍČ, Filip NÁLEPA, David NOVÁK, Daniel TOVARŇÁK, Pavel ZEZULA, Jakub PESCHEL, Kasanič DENIS, Denisa ŠRÁMKOVÁ, Erik HRICIŠÁK, Vladimír LAZÁRIK and Kristián GUTIČ. ANALYZA – Výpočetní a orchestrační subsystém (ANALYZA – Computation and Orchestration Subsystem). 2020.

LHOTÁK, Marin, Martin DUDA, Andrea FOJTŮ, Jan HEJZL, Jan HUTAŘ, Filip KERSCH, Jana KŘÍŽOVÁ, Marek MELICHAR, Martina NEZBEDOVÁ, Miroslav PAVELKA, Eliška PAVLÁSKOVÁ, Jan POKORSKÝ, Michal PŠENIČKA, Ivana ŠLAPÁKOVÁ, Zdeněk TICHÝ, Miroslav BARTOŠEK, Jan BILWACHS, Lukáš HEJTMÁNEK, Zdeněk HRUŠKA, Václav JIROUŠEK, Pavlína KOČIŠOVÁ, Vlastimil KREJČÍŘ, Iveta LODROVÁ, Natalie OSTRÁKOVÁ, Michal RŮŽIČKA, Zdeněk VAŠEK and Petr ŽABIČKA. ARCLib. 2020.

KICO, Iris, David ZELNÍČEK and Fotios LIAROKAPIS. Assessing the Learning of Folk Dance Movements Using Immersive Virtual Reality. Online. In Juan Guerrero. 2020 24th International Conference on Information Visualisation (IV). Melbourne: IEEE, 2020, p. 587-592. ISBN 978-1-7281-9134-8. Available from: https://dx.doi.org/10.1109/IV51561.2020.00100.

NEHYBA, Jan, Michal ŠTEFÁNIK and Jana KRATOCHVÍLOVÁ. Automatická detekce reflektivního psaní u studentů učitelství (Automatic detection of reflective writing in pre-service teachers). 2020.

URBANOVÁ, Petra, Petr VACHŮT, Kateřina HLOUCHOVÁ, Mikoláš JURDA, Cyril Josef KOMOSNÝ, Helena LUKÁŠOVÁ and Ctibor OSTRÝ. BARON TRENCK Nová tvář legendy (BARON TRENCK New face of the Legend). první. Praha: Galén, 2020, 189 pp. ISBN 978-80-7492-507-8.

RUBENS, Ulysse, Romain MORMONT, Lassi PAAVOLAINEN, Volker BÄCKER, Benjamin PAVIE, Leandro A. SCHOLZ, Gino MICHIELS, Martin MAŠKA, Devrim ÜNAY, Graeme BALL, Renaud HOYOUX, Rémy VANDAELE, Ofra GOLANI, Stefan G. STANCIU, Natasa SLADOJE, Perrine PAUL-GILLOTEAUX, Raphaël MARÉE and Sébastien TOSI. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns. Cell Press, 2020, vol. 1, No 3, p. 1-10. ISSN 2666-3899. Available from: https://dx.doi.org/10.1016/j.patter.2020.100040.

MAIER-HEIN, Lena, Annika REINKE, Michal KOZUBEK, Anne L. MARTEL, Tal ARBEL, Matthias EISENMANN, Allan HANBURY, Pierre JANNIN, Henning MÜLLER, Sinan ONOGUR, Julio SAEZ-RODRIGUEZ, Bram VAN GINNEKEN, Annette KOPP-SCHNEIDER and Bennett A. LANDMAN. BIAS: Transparent reporting of biomedical image analysis challenges. Medical Image Analysis. Elsevier, 2020, vol. 66, No 101796, p. 1-7. ISSN 1361-8415. Available from: https://dx.doi.org/10.1016/j.media.2020.101796.

BEYER, Johanna, Charles HANSEN, Mario HLAWITSCHKA, Ingrid HOTZ, Barbora KOZLÍKOVÁ, Gerik SCHEUERMANN, Markus STOMMEL, Marc STREIT, Johannes WASCHKE, Thomas WISCHGOLL and Yong WAN. Case Studies for Working with Domain Experts. In Min Chen, Helwig Hauser, Penny Rheingans, Gerik Scheuermann. Foundations of Data Visualization. Switzerland: Springer, 2020, p. 255-278. ISBN 978-3-030-34443-6. Available from: https://dx.doi.org/10.1007/978-3-030-34444-3_13.

ŘEHÁKOVÁ, Daniela, Tereza SOURALOVÁ and Irena KOUTNÁ. Clinical-Grade Human Pluripotent Stem Cells for Cell Therapy: Characterization Strategy. International Journal of Molecular Sciences. Basel: MDPI, 2020, vol. 21, No 7, p. 1-14. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms21072435.

AKBAS, Cem Emre and Michal KOZUBEK. Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers. Online. In IEEE 17th International Symposium on Biomedical Imaging. Iowa: IEEE, 2020, p. 446-450. ISBN 978-1-5386-9330-8. Available from: https://dx.doi.org/10.1109/ISBI45749.2020.9098351.

NOVOTNÝ, Vít and Marie STARÁ. Cthulhu Hails from Wales: N-gram Frequency Analysis of R'lyehian. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Fourteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2020. Brno: Tribun EU, 2020, p. 87-92. ISBN 978-80-263-1600-8.

ROHAN, Tomáš and Tereza KOPŘIVOVÁ. Difuzní léze jater. In 18. Valtické kurzy abdominální a gastrointestinální radiologie. 2020.

FURMANOVÁ, Katarína, Ondřej VÁVRA, Barbora KOZLÍKOVÁ, Jiří DAMBORSKÝ, Vojtěch VONÁSEK, David BEDNÁŘ and Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Trajectories. Computer Graphics Forum. Wiley-Blackwell, 2020, vol. 39, No 6, p. 452-464. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14048.

ABBOUD, Angèle, Pierre BÉDOUCHA, Jan BYŠKA, Thomas ARNESEN and Nathalie REUTER. Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases. Computational and Structural Biology Journal. Netherlands: Elsevier, 2020, vol. 18, No 1, p. 532-547. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2020.02.017.

FARKAŠ, Šimon, Pavel ŠIMARA, Daniela ŘEHÁKOVÁ, Lenka VEVERKOVÁ and Irena KOUTNÁ. Endothelial Progenitor Cells Produced From Human Pluripotent Stem Cells by a Synergistic Combination of Cytokines, Small Compounds, and Serum-Free Medium. Frontiers in Cell and Developmental Biology. Lausanne: Frontiers Media S.A., 2020, vol. 8, No 309, p. 1-15. ISSN 2296-634X. Available from: https://dx.doi.org/10.3389/fcell.2020.00309.

MAREČKOVÁ, Klára, Anna PAČÍNKOVÁ, Anja KLASNJA, Jean SHIN, Lenka ANDRÝSKOVÁ, Kateřina STAŇO KOZUBÍK, Zdenka PAUSOVÁ, Milan BRÁZDIL and Tomáš PAUS. Epigenetic clock as a correlate of anxiety. NeuroImage. Oxford: Elsevier Science Ltd, 2020, vol. 28, No 2020, p. 102458-102465. ISSN 2213-1582. Available from: https://dx.doi.org/10.1016/j.nicl.2020.102458.

KEROUŠ, Bojan, Elis BARTEČKŮ, Robert ROMAN, Petr SOJKA, Ondřej BEČEV and Fotios LIAROKAPIS. Examination of electrodermal and cardio-vascular reactivity in virtual reality through a combined stress induction protocol. JOURNAL OF AMBIENT INTELLIGENCE AND HUMANIZED COMPUTING. HEIDELBERG: SPRINGER HEIDELBERG, 2020, vol. 11, No 12, p. 6033-6042. ISSN 1868-5137. Available from: https://dx.doi.org/10.1007/s12652-020-01858-7.

BERAN, Michal, František HRDINA, Daniel KOUŘIL, Radek OŠLEJŠEK and Kristína ZÁKOPČANOVÁ. Exploratory Analysis of File System Metadata for Rapid Investigation of Security Incidents. Online. In 2020 IEEE Symposium on Visualization for Cyber Security (VizSec). Salt Lake City, US: IEEE, 2020, p. 11-20. ISBN 978-1-7281-8262-9. Available from: https://dx.doi.org/10.1109/VizSec51108.2020.00008.

KOZLÍKOVÁ, Barbora, Bernhard PREIM, Katja BUHLER and Renata RAIDOU. Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019. Elsevier ScienceDirect, 2020. Available from: https://dx.doi.org/10.1016/j.cag.2020.08.009.

SVOBODA, David and Tereza NEČASOVÁ. Image-based Simulations of Tubular Network Formation. Online. In 17th IEEE International Symposium on Biomedical Imaging. Neuveden: IEEE, 2020, p. 1608-1612. ISBN 978-1-5386-9330-8. Available from: https://dx.doi.org/10.1109/ISBI45749.2020.9098736.

KICO, Iris and Fotis LIAROKAPIS. Investigating the Learning Process of Folk Dances Using Mobile Augmented Reality. Applied sciences. Basel: MDPI, 2020, vol. 10, No 2, p. 1-14. ISSN 2076-3417. Available from: https://dx.doi.org/10.3390/app10020599.

MIKEŠ, Marek and Zdeněk ZÁHORA. Japonské hry pod mikroskopem (Japanese games under the microscope). In Gamer Pie Level 3,5. Brno: Gamer Pie, 2020.

PAVLATOVSKÁ, Barbora, Markéta MACHÁLKOVÁ, Petra BRISUDOVÁ, Adam PRUŠKA, Karel ŠTĚPKA, Jan MICHÁLEK, Tereza NEČASOVÁ, Petr BENEŠ, Jan ŠMARDA, Jan PREISLER, Michal KOZUBEK and Jarmila NAVRÁTILOVÁ. Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis. Frontiers in Oncology. Lausanne: Frontiers Media S.A., 2020, vol. 10, December, p. 1-18. ISSN 2234-943X. Available from: https://dx.doi.org/10.3389/fonc.2020.581365.

RAIDOU, Renata Georgia, Katarína FURMANOVÁ, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Eduard GRÖLLER and Ludvig P MUREN. Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy. Online. In Christina Gillmann, Michael Krone, Guido Reina, Thomas Wischgoll. VisGap - The Gap between Visualization Research and Visualization Software. Norrköping, Sweden: The Eurographics Association, 2020, p. 51-58. ISBN 978-3-03868-125-0. Available from: https://dx.doi.org/10.2312/visgap.20201110.

NOVOTNÝ, Vít. Making Markdown into a microwave meal. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2020, roč. 41, No 3, 3 pp. ISSN 0896-3207. Available from: https://dx.doi.org/10.47397/tb/41-3/tb129novotny-frozen.

NOVOTNÝ, Vít. Markdown 2.8.1: Směle k trůnu odlehčeného značkování v TeXu (Markdown 2.8.1: Boldly Unto the Throne of Lightweight Markup in TeX). Zpravodaj CSTUG. Brno: CSTUG, 2020, vol. 30, 1-2, p. 48-56. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2020-1-2/48.

HOŘÍNKOVÁ, Jana, Elis BARTEČKŮ, Marek DOSTÁL, Miloš KEŘKOVSKÝ, Alena DAMBORSKÁ and Petra ŠTROCHOLCOVÁ. Morfologie Corpus Callosum a klinický stav u pacientů s depresivní poruchou (Corpus Callosum morphology and clinical state in patients with major depression). In Změny klimatu v české psychiatrii: Sborník příspěvků XIII. sjezdu Psychiatrické společnosti ČLS JEP 2020. 2020.

FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER and Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, vol. 26, No 1, p. 843-852. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2019.2934333.

ORÉMUŠ, Zoltán, Kahin AKRAM HASSAN, Jiří CHMELÍK, Michaela KŇAŽKOVÁ, Jan BYŠKA, Renata Georgia RAIDOU and Barbora KOZLÍKOVÁ. PINGU: Principles of Interactive Navigation for Geospatial Understanding. Online. In IEEE. 2020 IEEE Pacific Visualization Symposium (PacificVis). Tianjin, China: IEEE PacificVis 2020, 2020, p. 216-225. ISBN 978-1-7281-5697-2. Available from: https://dx.doi.org/10.1109/PacificVis48177.2020.7567.

MRÓZEK, Jan, Tereza NEČASOVÁ, Michal SVOBODA, Iveta ŠIMKOVÁ and Pavel JANSA. Prediction Score for persisting perfusion defects after pulmonary embolism. Biomedical Papers. Olomouc: Univerzita Palackého v Olomouci, 2020, vol. 164, No 4, p. 394-400. ISSN 1213-8118. Available from: https://dx.doi.org/10.5507/bp.2019.033.

JAIN, Akanksha, Vladimír ULMAN, Argo MUKHERJEE, Mangal PRAKASH, Lokesh PIMPALE, Stefan MÜNSTER, Panfilio KRISTEN, Florian JUG, Stephan GRILL, Pavel TOMANCAK and Anastasios PAVLOPOULOS. Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Online. Nature Communications. Springer, 2020, vol. 11, p. 1-13. Available from: https://dx.doi.org/10.1038/s41467-020-19356-x.

PÁLENIK, Juraj, Jan BYŠKA, Stefan BRUCKNER and Helwig HAUSER. Scale-Space Splatting: Reforming Spacetime for Cross-Scale Exploration of Integral Measures in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, vol. 26, No 1, p. 643-653. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2019.2934258.

VONÁSEK, Vojtěch, Robert PĚNIČKA and Barbora KOZLÍKOVÁ. Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning. Journal of Intelligent & Robotic Systems. Springer Nature B. V., 2020, vol. 100, 3-4, p. 1527-1543. ISSN 0921-0296. Available from: https://dx.doi.org/10.1007/s10846-020-01247-4.

KEROUŠ, Bojan, Richard BARTEČEK, Robert ROMAN, Petr SOJKA, Ondřej BEČEV and Fotis LIAROKAPIS. Social environment simulation in VR elicits a distinct reaction in subjects with different levels of anxiety and somatoform dissociation. International Journal of Human-Computer Interaction. Taylor&Francis, 2020, vol. 36, No 6, p. 505-515. ISSN 1044-7318. Available from: https://dx.doi.org/10.1080/10447318.2019.1661608.

FURMANOVÁ, Katarína, Samuel GRATZL, Holger STITZ, Thomas ZICHNER, Miroslava JAREŠOVÁ, Alexander LEX and Marc STREIT. Taggle: Combining Overview and Details in Tabular Data Visualizations. Information Visualization. 2020, vol. 19, No 2, p. 114-136. ISSN 1473-8716. Available from: https://dx.doi.org/10.1177/1473871619878085.

SOJKA, Petr, Aleš HORÁK, Ivan KOPEČEK and Karel PALA. Text, Speech and Dialogue: 23rd International Conference TSD 2020, Brno, Czech Republic, September 8-11, 2020. Edited by Sojka P., Horák A., Kopeček I., Pala K. prvni. Berlin Heidelberg: Springer Verlag, 2020, 542 pp. ISBN 978-3-030-58323-1. Available from: https://dx.doi.org/10.1007/978-3-030-58323-1.

NOVOTNÝ, Vít. The Art of Reproducible Machine Learning: A Survey of Methodology in Word Vector Experiments. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Fourteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2020. Brno: Tribun EU, 2020, p. 55-64. ISBN 978-80-263-1600-8.

REINA, Guido, Hank CHILDS, Krešimir MATKOVIĆ, Katja BÜHLER, Manuela WALDNER, David PUGMIRE, Barbora KOZLÍKOVÁ, Timo ROPINSKI, Patric LJUNG, Takayuki ITOH, Eduard GRÖLLER and Michael KRONE. The moving target of visualization software for an increasingly complex world. Computers & Graphics. Netherlands: Elsevier Science Direct, 2020, vol. 87, April, p. 12-29. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2020.01.005.

JUŘÍK, Vojtěch, Lukáš HERMAN, Dajana SNOPKOVÁ, Adrianne John GALANG, Zdeněk STACHOŇ, Jiří CHMELÍK, Petr KUBÍČEK and Čeněk ŠAŠINKA. The 3D hype : Evaluating the potential of real 3D visualization in geo-related applications. PLoS ONE. San Francisco: Public Library of Science, 2020, vol. 15, No 5, p. 1-18. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0233353.

NOVOTNÝ, Vít, Petr SOJKA, Michal ŠTEFÁNIK and Dávid LUPTÁK. Three is Better than One: Ensembling Math Information Retrieval Systems. CEUR Workshop Proceedings. Thessaloniki, Greece: M. Jeusfeld c/o Redaktion Sun SITE, Informatik V, RWTH Aachen., 2020, vol. 2020, No 2696, p. 93-122. ISSN 1613-0073.

NOVOTNÝ, Vít, Michal ŠTEFÁNIK, Dávid LUPTÁK and Petr SOJKA. Towards Useful Word Embeddings: Evaluation on Information Retrieval, Text Classification, and Language Modeling. In Aleš Horák and Pavel Rychlý and Adam Rambousek. Proceedings of the Fourteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2020. Brno: Tribun EU, 2020, p. 37-46. ISBN 978-80-263-1600-8.

TESAŘOVÁ, Lenka, Klára JAREŠOVÁ, Pavel ŠIMARA and Irena KOUTNÁ. Umbilical Cord-Derived Mesenchymal Stem Cells Are Able to Use bFGF Treatment and Represent a Superb Tool for Immunosuppressive Clinical Applications. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2020, vol. 21, No 15, p. 1-27. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms21155366.

LIAROKAPIS, Fotios, Iveta VIDOVÁ, Selma RIZVIĆ, Stella DEMESTICHA and Dimitrios SKARLATOS. Underwater Search and Discovery: From Serious Games to Virtual Reality. In 22nd International Conference on Human-Computer Interaction, HCII 2020. Copenhagen, Denmark: Springer, 2020, p. 178-197. ISBN 978-3-030-59989-8. Available from: https://dx.doi.org/10.1007/978-3-030-59990-4_15.

FURMANOVÁ, Katarína, Renata G RAIDOU, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK and Ludvig P MUREN. Using multiple planning scans to predict organ shape variability during RT for prostate cancer. In ESTRO 2020. 2020.

FURMANOVÁ, Katarína, Nicolas GROSSMANN, Ludvig P. MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P. EINCK, Eduard M. GRÖLLER and Renata G. RAIDOU. VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy. Computers & Graphics. 2020, vol. 91, October 2020, p. 25-38. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2020.07.001.

ŠKOLA, Filip, Selma RIZVIC, Marco COZZA, Loris BARBIERI, Fabio BRUNO, Dimitrios SKARLATOS and Fotis LIAROKAPIS. Virtual Reality with 360-Video Storytelling in Cultural Heritage: Study of Presence, Engagement, and Immersion. Sensors. Švýcarsko: MDPI, 2020, vol. 20, No 20, p. 1-17. ISSN 1424-8220. Available from: https://dx.doi.org/10.3390/s20205851.

ŠIMARA, Pavel, Viktor LUKJANOV, Pavel OTÁHAL and Irena KOUTNÁ. Virus-free production of CAR T-cells for the treatment of solid tumors. In CAR-TCR Europe Summit. 2020.

BYŠKA, Jan, Adam JURČÍK, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ and Jan PALEČEK. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. In Stefan Canzar, Francisca Rojas Ringeling. Protein-Protein Interaction Networks. 1st ed. New York, NY: Humana Press Inc, 2020, p. 81-94. Methods in Molecular Biology, vol. 2074. ISBN 978-1-4939-9872-2. Available from: https://dx.doi.org/10.1007/978-1-4939-9873-9_7.

BEDOUCHA, Pierre, Reuter NATHALIE, Helwig HAUSER and Jan BYŠKA. Visual exploration of large normal mode spaces to study protein flexibility. Computers & Graphics. Netherlands: Elsevier Science Direct, 2020, vol. 90, August, p. 73-83. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2020.05.025.

KICO, Iris, Milan DOLEŽAL, Nikos GRAMMALIDIS and Fotios LIAROKAPIS. Visualization of Folk-Dances in Virtual Reality Environments. Online. In Androniki Kavoura, Efstathios Kefallonitis, Prokopios Theodoridis. Strategic Innovative Marketing and Tourism. Not Specified: Springer, Cham, 2020, p. 51-59. ISBN 978-3-030-36125-9. Available from: https://dx.doi.org/10.1007/978-3-030-36126-6_7.

VENTRUBA, Pavel, Jana ŽÁKOVÁ, Michal JEŠETA, Eva LOUSOVÁ, Aleš HAMPL, Irena KOUTNÁ and Tereza SOURALOVÁ. Výběr a příprava embryí pro vznik lidských embryonálních kmenových buněk určených k humánní terapii. (Selection and preparation of embryos for the formation of human embryonic stem cells for human therapy.). In 30. sympozium asistované reprodukce SAR ČGPS ČLS JEP a 19. česko–slovenská konference reprodukční gynekologie, Brno, Czech Republic. 2020.

KOZUBEK, Michal. When Deep Learning Meets Cell Image Synthesis. Cytometry Part A. John Wiley & Sons, 2020, vol. 97, No 3, p. 222-225. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.23957.

NOVOTNÝ, Vít. When Tesseract Does It Alone: Optical Character Recognition of Medieval Texts. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Fourteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2020. Brno: Tribun EU, 2020, p. 3-12. ISBN 978-80-263-1600-8.

NIFORATOS, Evangelos, Adam PALMA, Roman GLUSZNY, Athanasios VOURVOPOULOS and Fotios LIAROKAPIS. Would You Do It?: Enacting Moral Dilemmas in Virtual Reality for Understanding Ethical Decision-Making. Online. In Proceedings of the 2020 CHI Conference on Human Factors in Computing Systems. New York, NY, USA: ACM, 2020, p. 1-12. ISBN 978-1-4503-6708-0. Available from: https://dx.doi.org/10.1145/3313831.3376788.

SOJKA, Petr. XX. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XX. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2020.

HANDBERG-THORSAGER, Mette, Vladimír ULMAN, Pavel TOMANČÁK, D. ARENDT and M. SCHUBERT. A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid. In Swapan K. Ray. Retinoid and Rexinoid Signaling. Springer, 2019, p. 193-207. ISBN 978-1-4939-9584-4. Available from: https://dx.doi.org/10.1007/978-1-4939-9585-1_14.

KICO, Iris and Fotis LIAROKAPIS. A Mobile Augmented Reality Interface for Teaching Folk Dances. Online. In Tomas Trescak, Simeon Simoff, Deborah Richards, Anton Bogdanovych, Thierry Duval, Torsten Kuhlen, Huyen Nguyen, Shigeo Morishima, Yuichi Itoh, Richard Skarbez, Martin Masek. Proceeding VRST '19 25th ACM Symposium on Virtual Reality Software and Technology Article No. 47. New York, NY, USA: ACM New York, NY, USA, 2019, p. 1-2. ISBN 978-1-4503-7001-1. Available from: https://dx.doi.org/10.1145/3359996.3364752.

KUŤÁK, David, Milan DOLEŽAL, Bojan KEROUŠ, Zdenek EICHLER, Jiří VAŠEK and Fotios LIAROKAPIS. An Interactive and Multimodal Virtual Mind Map for Future Workplace. Frontiers in ICT. 2019, vol. 6, No 14, p. 1-13. ISSN 2297-198X. Available from: https://dx.doi.org/10.3389/fict.2019.00014.

BYŠKA, Jan, Thomas TRAUTNER, Sérgio Manuel MARQUES, Jiří DAMBORSKÝ, Barbora KOZLÍKOVÁ and Manuela WALDNER. Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Computer Graphics Forum. Wiley-Blackwell, 2019, vol. 38, No 3, p. 441-453. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.13701.

CONNOR, S., J. SHUTTLEWORTH, S. COLREAVY-DONNELLY and Fotios LIAROKAPIS. Assessing the perceived realism of agent grouping dynamics for adaptation and simulation. Entertainment Computing. OXFORD: Elsevier, 2019, vol. 32, neuveden, p. 1-14. ISSN 1875-9521. Available from: https://dx.doi.org/10.1016/j.entcom.2019.100323.

AKBAŞ, Cem Emre, Vladimír ULMAN, Martin MAŠKA, Florian JUG and Michal KOZUBEK. Automatic Fusion of Segmentation and Tracking Labels. In Laura Leal-Taixé, Stefan Roth. Computer Vision – ECCV 2018 Workshops. LNCS 11134. Switzerland: Springer Nature, 2019, p. 446-454. ISBN 978-3-030-11023-9. Available from: https://dx.doi.org/10.1007/978-3-030-11024-6_34.

ŠAFRÁNEK, David, Matej TROJÁK, Vojtěch BRŮŽA, Tomáš VEJPUSTEK, Jan PAPOUŠEK, Martin DEMKO, Samuel PASTVA, Aleš PEJZNOCH and Luboš BRIM. Barbaric Robustness Monitoring Revisited for STL* in Parasim. In Bortolussi L., Sanguinetti G. Computational Methods in Systems Biology (CMSB 2019). LNBI 11773. Neuveden: Springer, 2019, p. 356-359. ISBN 978-3-030-31303-6. Available from: https://dx.doi.org/10.1007/978-3-030-31304-3_26.

URBANOVÁ, Petra, Mikoláš JURDA, Helena LUKÁŠOVÁ, Ctibor OSTRÝ, Petr VACHŮT and Michal PALAŠČAK. Baron Trenck: Nová tvář legendy (Baron Trenck: New face of legend). 2019.

ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, W1, p. 414-422. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz378.

VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.

SOURALOVÁ, Tereza, Aleš HAMPL, Irena KOUTNÁ and Pavel VENTRUBA. Clinical grade human embryonic stem cells: derivation and characterization. In 29. sympozium asistované reprodukce a 18. česko-slovenská konference reprodukční gynekologie, Brno, Czech Republic. 2019.

ŠAŠINKA, Čeněk, Zdeněk STACHOŇ, Michal SEDLÁK, Jiří CHMELÍK, Lukáš HERMAN, Petr KUBÍČEK, Alžběta STRNADOVÁ, Milan DOLEŽAL, Hynek TEJKL, Tomáš URBÁNEK, Hana SVATOŇOVÁ, Pavel UGWITZ and Vojtěch JUŘÍK. Collaborative Immersive Virtual Environments for Education in Geography. ISPRS International Journal of Geo-Information. Basel, Switzerland: MDPI, 2019, vol. 8, No 1, p. 1-25. ISSN 2220-9964. Available from: https://dx.doi.org/10.3390/ijgi8010003.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Jan MICHÁLEK, Karel ŠTĚPKA, Adam PRUŠKA, Michal KOZUBEK, Petr BENEŠ, Jan ŠMARDA and Jan PREISLER. Combined therapy of perifosine and ABT-737 results in higher cytotoxic effect but also induces expression of EMT markers in colon cancer cell lines. In Spetses Summer School: Molecular Mechanisms in Signal Transduction and Cancer, Greece. 2019.

KICO, Iris and Fotios LIAROKAPIS. Comparison of Trajectories and Quaternions of Folk Dance Movements Using Dynamic Time Warping. Online. In Fotis Liarokapis. 2019 11th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games). Vienna: IEEE, 2019, p. 1-4. ISBN 978-1-5386-7123-8. Available from: https://dx.doi.org/10.1109/VS-Games.2019.8864604.

VONÁSEK, Vojtěch, Robert PĚNIČKA and Barbora KOZLÍKOVÁ. Computing multiple guiding paths for sampling-based motion planning. Online. In ICAR - 19th International Conference on Advanced Robotics. Proceedings of the 19th International Conference on Advanced Robotics, ICAR 2019. Belo Horizonte, Brazil: Neuveden, 2019, p. 374-381. ISBN 978-1-7281-2467-4. Available from: https://dx.doi.org/10.1109/ICAR46387.2019.8981589.

PAČÍNKOVÁ, Anna and Vlad POPOVICI. Cross-platform Data Analysis Reveals a Generic Gene Expression Signature for Microsatellite Instability in Colorectal Cancer. Biomed Research International. New York: Hindawi Publishing Corporation, 2019, vol. 2019, vol. 2019, p. 1-9. ISSN 2314-6133. Available from: https://dx.doi.org/10.1155/2019/6763596.

WIESNER, David, David SVOBODA, Martin MAŠKA and Michal KOZUBEK. CytoPacq: A web-interface for simulating multi-dimensional cell imaging. Bioinformatics. Oxford University Press, 2019, vol. 35, No 21, p. 4531-4533. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz417.

GÓMEZ-DE-MARISCAL, Estibaliz, Martin MAŠKA, Anna KOTRBOVÁ, Vendula POSPÍCHALOVÁ, Pavel MATULA and Arrate MUÑOZ-BARRUTIA. Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images. Scientific Reports. 2019, vol. 9, No 13211, p. 1-10. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-019-49431-3.

ČEJKA, Jan, Fabio BRUNO, Dimitrios SKARLATOS and Fotis LIAROKAPIS. Detecting Square Markers in Underwater Environments. Remote Sensing. Basel: MDPI AG, 2019, vol. 11, No 4, p. 1-23. ISSN 2072-4292. Available from: https://dx.doi.org/10.3390/rs11040459.

LUX, Filip and Petr MATULA. DIC Image Segmentation of Dense Cell Populations by Combining Deep Learning and Watershed. Online. In IEEE 16th International Symposium on Biomedical Imaging. Venice, Italy, Italy: IEEE 16th International Symposium on Biomedical Imaging, 2019, p. 236-239. ISBN 978-1-5386-3641-1. Available from: https://dx.doi.org/10.1109/ISBI.2019.8759594.

JURDA, Mikoláš, Petra URBANOVÁ and Jiří CHMELÍK. Digital restoration of fragmentary human skeletal remains: Testing the feasibility of virtual reality. Journal of Forensic and Legal Medicine. Oxford: Elsevier Science, 2019, vol. 66, AUG 2019, p. 50-57. ISSN 1752-928X. Available from: https://dx.doi.org/10.1016/j.jflm.2019.06.005.

HAJDIN, Matúš, Iris KICO, Milan DOLEŽAL, Jiří CHMELÍK, Anastasios DOULAMIS and Fotis LIAROKAPIS. Digitization and Visualization of Movements of Slovak Folk Dances. Online. In Auer, Michael E.; Tsiatsos, Thrasyvoulos. The Challenges of the Digital Transformation in Education. Switzerland: Springer International Publishing, 2019, p. 245-256. ISBN 978-3-030-11934-8. Available from: https://dx.doi.org/10.1007/978-3-030-11935-5_24.

FURMANOVÁ, Katarína, Barbora KOZLÍKOVÁ, Vojtěch VONÁSEK and Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Data. In Kozlíková, Barbora and Linsen, Lars and Vázquez, Pere-Pau and Lawonn, Kai and Raidou, Renata Georgia. Eurographics Workshop on Visual Computing for Biology and Medicine. Brno: The Eurographics Association, 2019, p. 113-122. ISBN 978-3-03868-081-9. Available from: https://dx.doi.org/10.2312/vcbm.20191238.

MACHÁLKOVÁ, Markéta, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Tereza NEČASOVÁ, Katarzyna Anna RADASZKIEWICZ, Michal KOZUBEK, Jan ŠMARDA, Jan PREISLER and Jarmila NAVRÁTILOVÁ. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images. Analytical Chemistry. American Chemical Society, 2019, vol. 91, No 21, p. 13475-13484. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.9b02462.

ŠKOLA, Filip and Fotis LIAROKAPIS. Examining And Enhancing The Illusory Touch Perception In Virtual Reality Using Non-Invasive Brain Stimulation. Online. In Proceedings of the 2019 CHI Conference on Human Factors in Computing Systems, Paper No. 247. Glasgow, Scotland Uk: ACM Press, 2019, p. 1-12. ISBN 978-1-4503-5970-2. Available from: https://dx.doi.org/10.1145/3290605.3300477.

JUŘÍK, Vojtěch, Zuzana ŠMIDEKOVÁ, Pavel UGWITZ, Jiří CHMELÍK and Čeněk ŠAŠINKA. Eye-tracking in VR setting : implementation for cross-cultural research. In 20th European Conference on Eye Movements, 18.-22. 8. 2019, Alicante, Spain. 2019.

LUPTÁK, Dávid. Fantasia Apocalyptica: Česká premiéra (Fantasia Apocalyptica: The Czech Première). Zpravodaj CSTUG. Brno: CSTUG, 2019, vol. 29, 1-4, p. 11-18. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2019-1-4/11.

MICHÁLEK, Jan, Pavla HANZLÍKOVÁ, Tuan TRINH and Dalibor PACÍK. Fast and accurate compensation of signal offset for T2 mapping. Magnetic Resonance Materials in Physics, Biology and Medicine. Springer International Publishing, 2019, vol. 32, No 4, p. 423-436. ISSN 0968-5243. Available from: https://dx.doi.org/10.1007/s10334-019-00737-3.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Jiří FILIPOVIČ, Jan ŠTOURAČ, David BEDNÁŘ and Jiří DAMBORSKÝ. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock. FRONTIERS IN CHEMISTRY. LAUSANNE: FRONTIERS MEDIA SA, 2019, vol. 7, OCT 29 2019, p. 1-14. ISSN 2296-2646. Available from: https://dx.doi.org/10.3389/fchem.2019.00709.

NAVRÁTILOVÁ, Jarmila, Markéta MACHÁLKOVÁ, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Katarzyna Anna RADASZKIEWICZ, Jan PREISLER, Jan ŠMARDA and Michal KOZUBEK. Fiducial-based semi-automatic coregistration and analysis of multimodal MALDI MS and immunofluorescent data. In Imaging Principles of Life 2019. 2019.

BĚLOHLÁVKOVÁ, Petra, Kateřina STEINEROVÁ, Michal KARAS, Ivana SKOUMALOVÁ, Peter ROHOŇ, Karel INDRÁK, Jaroslava VOGLOVÁ, Filip VRBACKÝ, Eduard CMUNT, Tereza NEČASOVÁ, Zlatuše KŘÍSTKOVÁ, Marek TRNĚNÝ, Pavel ŽÁK, Tomáš PAPAJÍK and Edgar FABER. First-line imatinib in elderly patients with chronic myeloid leukaemia from the CAMELIA registry: Age and dose still matter. Leukemia Research. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2019, vol. 81, JUN 2019, p. 67-74. ISSN 0145-2126. Available from: https://dx.doi.org/10.1016/j.leukres.2019.04.011.

KUBÍČEK, Petr, Čeněk ŠAŠINKA, Zdeněk STACHOŇ, Lukáš HERMAN, Vojtěch JUŘÍK, Tomáš URBÁNEK and Jiří CHMELÍK. Identification of altitude profiles in 3D geovisualizations: the role of interaction and spatial abilities. International Journal of Digital Earth. Taylor & Francis, 2019, vol. 12, No 2, p. 156-172. ISSN 1753-8947. Available from: https://dx.doi.org/10.1080/17538947.2017.1382581.

CAPANDOVÁ, Michaela, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Šimon FARKAŠ, Irena KOUTNÁ and Aleš HAMPL. In vitro model of alveolar capillary barrier. In The Biomania Student Scientific Meeting & EUSynBioS Symposium 2019. 2019. ISBN 978-80-210-9373-7.

LUKŠ, Roman and Fotis LIAROKAPIS. Investigating motion sickness techniques for immersive virtual environments. Online. In Proceedings of the 12th ACM International Conference on PErvasive Technologies Related to Assistive Environments, ACM Press, 280-288, 2019. New York: ACM, 2019, p. 280-288. ISBN 978-1-4503-6232-0. Available from: https://dx.doi.org/10.1145/3316782.3321535.

KOUŘIL, David, Ladislav ČMOLÍK, Barbora KOZLÍKOVÁ, Hsiang-Yun WU, Graham JOHNSON, David S. GOODSELL, Arthur OLSON, Eduard M. GROELLER and Ivan VIOLA. Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Transactions on Visualization and Computer Graphics. 2019, vol. 25, No 1, p. 977-986. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2018.2864491.

NOVOTNÝ, Vít. Markdown 2.7.0: Towards lightweight markup in TeX. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2019, roč. 40, No 1, p. 25-27. ISSN 0896-3207.

EFFENBERGER, Tomáš and Radek PELÁNEK. Measuring Students’ Performance on Programming Tasks. Online. In Proceedings of the Sixth (2019) ACM Conference on Learning @ Scale (L@S '19). New York: ACM, 2019, p. "26:1"-"26:4", 4 pp. ISBN 978-1-4503-6804-9. Available from: https://dx.doi.org/10.1145/3330430.3333639.

FERKOVÁ, Zuzana and Petr MATULA. Multimodal Point Distribution Model for Anthropological Landmark Detection. Online. In 26th IEEE International Conference on Image Processing (ICIP2019). Taipei, Taiwan: Springer, 2019, p. 2986-2990. ISBN 978-1-5386-6249-6. Available from: https://dx.doi.org/10.1109/ICIP.2019.8803252.

MIAO, Haichao, Tobias KLEIN, David KOUŘIL, Peter MINDEK, Karsten SCHATZ, Eduard M. GRÖLLER, Barbora KOZLÍKOVÁ, Tobias ISENBERG and Ivan VIOLA. Multiscale Molecular Visualization. Journal of Molecular Biology. 2019, vol. 431, No 6, p. 1049-1070. ISSN 0022-2836. Available from: https://dx.doi.org/10.1016/j.jmb.2018.09.004.

MIZEROVÁ, Alena, Lea NOVOTNÁ, Radka VYSKOČILOVÁ and Radek GOMOLA. Munipress. Nakladatelství Masarykovy univerzity. Svoboda slova v zrcadle univerzitních dějin (Munipress – Masaryk University Press. Freedom in the Mirror of University History). Online. 1., elektronické vyd. Brno: Masarykova univerzita, 2019, 155 pp. ISBN 978-80-210-9415-4.

MIZEROVÁ, Alena, Lea NOVOTNÁ, Radka VYSKOČILOVÁ and Radek GOMOLA. Munipress. Nakladatelství Masarykovy univerzity. Svoboda slova v zrcadle univerzitních dějin (Munipress – Masaryk University Press. Freedom in the Mirror of University History). 1st ed. Brno: Masarykova univerzita, 2019, 155 pp. ISBN 978-80-210-9414-7.

FARKAŠ, Šimon, Pavel ŠIMARA, Daniela ŘEHÁKOVÁ, Tereza SOURALOVÁ and Irena KOUTNÁ. Novel synergistic culturing approach for efficient and robust differentiation of human pluripotent stem cells into endothelial progenitors. In 8. ročník konference Stem Cells and Cell Therapy: From Research to Modern Clinical Applications, Lednice, Czech Republic. 2019.

WIESNER, David, Tereza NEČASOVÁ and David SVOBODA. On Generative Modeling of Cell Shape Using 3D GANs. Online. In Ricci Elisa, Rota Buló Samuel, Snoek Cees, Lanz Oswald, Messelodi Stefano, Sebe Nicu. Image Analysis and Processing – ICIAP 2019. LNCS 11752. Trento: Springer, 2019, p. 672-682. ISBN 978-3-030-30644-1. Available from: https://dx.doi.org/10.1007/978-3-030-30645-8_61.

ŠKOLA, Filip, Simona TINKOVÁ and Fotis LIAROKAPIS. Progressive Training for Motor Imagery Brain-Computer Interfaces Using Gamification and Virtual Reality Embodiment. Frontiers in Human Neuroscience. Lausanne: Frontiers Research Foundation, 2019, vol. 13, září, p. 1-16. ISSN 1662-5161. Available from: https://dx.doi.org/10.3389/fnhum.2019.00329.

LHOTÁK, Martin, Zdeněk VAŠEK and Michal RŮŽIČKA. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav (ARCLib – development of open source system for long-term preservation for library digital collections). In LTP 2019: Nové trendy a východiská pri budovaní LTP archívov: zborník príspevkov zo 4. medzinárodnej konferencie o dlhodobej archivácii. Bratislava: Univerzitná knižnica v Bratislave, 2019, p. 53-63. ISBN 978-80-89303-77-9.

MICHÁLEK, Jan, Karel ŠTĚPKA, Michal KOZUBEK, Jarmila NAVRÁTILOVÁ, Barbora PAVLATOVSKÁ, Markéta MACHÁLKOVÁ, Jan PREISLER and Adam PRUŠKA. Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids. Microscopy and Microanalysis. Cambridge University Press, 2019, vol. 25, No 6, p. 1311-1322. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927619014983.

SOJKA, Petr, Vít NOVOTNÝ, Eniafe Festus AYETIRAN, Dávid LUPTÁK and Michal ŠTEFÁNIK. Quo Vadis, Math Information Retrieval. In Aleš Horák and Pavel Rychlý and Adam Rambousek. Proceedings of the Thirteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2019. Brno: Tribun EU, 2019, p. 117-128. ISBN 978-80-263-1517-9.

CORTESE, Mirko, Anil KUMAR, Petr MATULA, Lars KADERALI, Pietro SCATURRO, Holger ERFLE, Eliana Gisela ACOSTA, Sandra BUEHLER, Alessia RUGGIERI, Laurent CHATEL-CHAIX, Karl ROHR and Ralf BARTENSCHLAGER. Reciprocal Effects of Fibroblast Growth Factor Receptor Signaling on Dengue Virus Replication and Virion Production. Cell Reports. CAMBRIDGE, Spojené státy americké: Cell Press, 2019, vol. 27, No 9, p. 2579-2592,"e1"-"e6", 20 pp. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2019.04.105.

VONÁSEK, Vojtěch, Adam JURČÍK, Katarína FURMANOVÁ and Barbora KOZLÍKOVÁ. Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. Journal of Intelligent & Robotic Systems. 2019, vol. 93, 3-4, p. 763-785. ISSN 0921-0296. Available from: https://dx.doi.org/10.1007/s10846-018-0877-6.

SOJKA, Petr and Vít NOVOTNÝ. Semantically Coherent Vector Space Representations. 2019.

NOVOTNÝ, Vít. Soft Cosine Measure: Capturing Term Similarity in the Bag of Words VSM. 2019.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Michal BERAN, František HRDINA, Tomáš JIRSÍK, Daniel KOUŘIL, Michal MAZOUREK, Radek OŠLEJŠEK, Michal PROCHÁZKA, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Vadim JANOVSKIJ and Kristína ZÁKOPČANOVÁ. Software pro detekci a analýzu napadení KII (Software for detection and analysis of attacks on critical information infrastructures). 2019.

ČELEDA, Pavel, Jakub ČEGAN, Karolína DOČKALOVÁ BURSKÁ, Jan DUDA, Martin HAMERNÍK, Miroslava JAREŠOVÁ, Erik KOČAMBA, Radek OŠLEJŠEK, Vít RUSŇÁK, Daniel TOVARŇÁK, Hai Duong TRAN, Jan VYKOPAL and Kristína ZÁKOPČANOVÁ. Software pro provádění bezpečnostních cvičení a školení (Software for realization of cybersecurity exercises and trainings). 2019.

MIČAN, Jan, Martin TOUL, David BEDNÁŘ and Jiří DAMBORSKÝ. Structural Biology and Protein Engineering of Thrombolytics. Computational and Structural Biology Journal. Amsterdam: Elsevier, 2019, vol. 17, No 2019, p. 917-938. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2019.06.023.

KOTRBOVÁ, Anna, Karel ŠTĚPKA, Martin MAŠKA, Juraj PÁLENIK, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Marek KRAVEC, František HUBATKA, Zankruti DAVE, Aleš HAMPL, Vítězslav BRYJA, Pavel MATULA and Vendula POSPÍCHALOVÁ. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images. Journal of Extracellular Vesicles. Taylor and Francis Ltd., 2019, vol. 8, No 1, p. 1-13. ISSN 2001-3078. Available from: https://dx.doi.org/10.1080/20013078.2018.1560808.

ŠALINGOVÁ, Barbara, Pavel ŠIMARA, Pavel MATULA, Lenka ZAJÍČKOVÁ, Petr SYNEK, Ondřej JAŠEK, Lenka VEVERKOVÁ, Miroslava SEDLÁČKOVÁ, Zuzana NICHTOVA and Irena KOUTNÁ. The Effect of Uncoated SPIONs on hiPSC-Differentiated Endothelial Cells. International Journal of Molecular Sciences. BASEL: Molecular Diversity Preservation International, 2019, vol. 20, No 14, p. 1-16. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms20143536.

EISELLEOVÁ, Lívia, Viktor LUKJANOV, Šimon FARKAŠ, David SVOBODA, Karel ŠTĚPKA and Irena KOUTNÁ. The role of RNA Polymerase II contiguity and long-range interactions in the regulation of gene expression in human pluripotent stem cells. Stem Cells International. Hindawi, 2019, vol. 2019, Article ID 1375807, p. 1-12. ISSN 1687-966X. Available from: https://dx.doi.org/10.1155/2019/1375807.

SOJKA, Petr and Ondřej SOJKA. The Unreasonable Effectiveness of Pattern Generation. TUGboat: The Communications of the TeX Users Group. San Francisco, USA: TUG, 2019, vol. 40, No 2, p. 187-193. ISSN 0896-3207.

MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN and David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, p. 819-823. ISBN 978-1-5386-6249-6. Available from: https://dx.doi.org/10.1109/ICIP.2019.8803721.

SOJKA, Petr and Ondřej SOJKA. Towards Universal Hyphenation Patterns. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Thirteenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2019. Brno: Tribun EU, 2019, p. 63-68. ISBN 978-80-263-1517-9.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Petra BRISUDOVÁ, Jan MICHÁLEK, Karel ŠTĚPKA, Adam PRUŠKA, Michal KOZUBEK, Petr BENEŠ, Jan ŠMARDA and Jan PREISLER. Tumor-specific microenvironment contributes to the perifosine resistance in 3D colorectal cancer (CRC) models. In Goodbye Flat Biology: Advancing 3D-based Models for Cancer Biology and Drug Discovery, Berlin, Germany. 2019.

DOLEŽAL, Milan, Marinos VLACHOS, Massimiliano SECCI, Stella DEMESTIHA, Dimitrios SKARLATOS and Fotis LIAROKAPIS. Understanding Underwater Photogrammetry for Maritime Archaeology Through Immersive Virtual Reality. Online. In Proc. of the Underwater 3D Recording & Modelling: A tool for modern applications and CH recording, Limassol, Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLII-2/W10. Limasol, Cyprus: ISPRS, 2019, p. 85-91. ISSN 2194-9042. Available from: https://dx.doi.org/10.5194/isprs-archives-XLII-2-W10-85-2019.

BRUNO, Fabio, Loris BARBIERI, Marino MANGERUGA, Marco COZZA, Antonio LAGUDI, Jan ČEJKA, Fotios LIAROKAPIS and Dimitrios SKARLATOS. Underwater augmented reality for improving the diving experience in submerged archaeological sites. Ocean Engineering. Elsevier Ltd., 2019, vol. 190, 15 October 2019, p. 1-10. ISSN 0029-8018. Available from: https://dx.doi.org/10.1016/j.oceaneng.2019.106487.

ŠTEFÁNIK, Michal and Vít NOVOTNÝ. Video699: Interconnecting Lecture Recordings with Study Materials. 2019.

JURČÍK, Adam, Katarína FURMANOVÁ, Jan BYŠKA, Vojtěch VONÁSEK, Ondřej VÁVRA, Pavol ULBRICH, Helwig HAUSER and Barbora KOZLÍKOVÁ. Visual Analysis of Ligand Trajectories in Molecular Dynamics. Online. In IEEE Pacific Visualization Symposium 2019. Bangkok, Thailand: IEEE, 2019, p. 212-221. ISBN 978-1-5386-9226-4. Available from: https://dx.doi.org/10.1109/PacificVis.2019.00032.

NEČASOVÁ, Tereza and David SVOBODA. Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data. In Laura Leal-Taixé, Stefan Roth. Computer Vision – ECCV 2018 Workshops. LNCS 11134. Munich, Germany: Springer, 2019, p. 385-394. ISBN 978-3-030-11023-9. Available from: https://dx.doi.org/10.1007/978-3-030-11024-6_28.

DURAN, David, Pedro HERMOSILLA, Timo ROPINSKI, Barbora KOZLÍKOVÁ, Álvar VINACUA and Pere-Pau VAZQUEZ. Visualization of Large Molecular Trajectories. IEEE Transactions on Visualization and Computer Graphics. 2019, vol. 25, No 1, p. 987-996. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2018.2864851.

SOJKA, Petr. XIX. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XIX. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2019.

CASTILLA, Carlos, Martin MAŠKA, Dmitry SOROKIN, Erik MEIJERING and Carlos ORTIZ-DE-SOLÓRZANO. 3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Transactions on Medical Imaging. IEEE, 2019, vol. 38, No 3, p. 862-872. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2018.2873842.

BERLAND, Siren, Trine L TOFT-BERTELSEN, Ingvild AUKRUST, Jan BYŠKA, Marc VAUDEL, Laurence BINDOFF, Nanna MACAULAY and Gunnar HOUGE. A de novo Ser111Thr variant in aquaporin-4 in a patient with intellectual disability, transient signs of brain ischemia, transient cardiac hypertrophy, and progressive gait disturbance. Molecular Case Studies. Cold Spring Harbor Laboratory Press, 2018, vol. 4, No 1.

BURYŠKA, Tomáš, Petra BABKOVÁ, Ondřej VÁVRA, Jiří DAMBORSKÝ and Zbyněk PROKOP. A Haloalkane Dehalogenase From a Marine Microbial Consortium Possessing Exceptionally Broad Substrate Specificity. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, 2018, vol. 84, No 2, p. 1-13. ISSN 0099-2240.

KREJSA, Jan, Bojan KEROUŠ and Fotis LIAROKAPIS. A Model for Eye and Head Motion for Virtual Agents. In Proc. of the 10th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games 2018). Würzburg, Germany: IEEE, 2018, p. 1-4. ISBN 978-1-5386-7123-8. Available from: https://dx.doi.org/10.1109/VS-Games.2018.8493406.

SOLÁR, Peter, Zdeněk MACKERLE, Hana VALEKOVÁ, Markéta HERMANOVÁ, Michal HENDRYCH, Radim JANČÁLEK and David SVOBODA. ADC mapy ve vztahu k peritumorózní buněčné infiltraci u glioblastomu. In XLII. Brněnské onkologické dny 2018. 2018.

MIKLÁŠOVÁ, Kristína, Ondřej LOMIČ, Lukáš CÍSAR, Lubomír POPELÍNSKÝ and Veronika KREJČÍŘOVÁ. Autoencoders vs. others for anomaly detection. Online. In Jaroslav Zendulka, Mária Bieliková, Radek Burget, Zbyněk Křivka. DATA A ZNALOSTI & WIKT 2018, sborník konference. Brno: Vysoké učení technické v Brně, 2018, p. 215-220. ISBN 978-80-214-5679-2.

JUŘÍK, Vojtěch, Lukáš HERMAN, Čeněk ŠAŠINKA, Zdeněk STACHOŇ, Jiří CHMELÍK, Alžběta STRNADOVÁ and Petr KUBÍČEK. Behavior Analysis in Virtual Geovisualizations : Towards Ecological Validity. Online. In Bandrova, Temenoujka; Konečný, Milan. 7th International Conference on Cartography and GIS : Proceedings, Vol. 1 and Vol. 2. Sofia: Bulgarian Cartographic Association, 2018, p. 518-527. ISSN 1314-0604.

BARTEČEK, Richard, Ondřej BEČEV, Robert ROMAN, Petr SOJKA, Bojan KEROUŠ, Fotios LIAROKAPIS and Martin BAREŠ. Biofeedback s využitím virtuální reality u pacientů s funkčními neurologickými poruchami - pilotní studie. In 60. česko-slovenská psychofarmakologická konference, Jeseník. 2018. ISSN 1211-7579.

LUKÁŠOVÁ, Helena and Anna BOČEK RONOVSKÁ. Brněnské legendy - projekt Brrrno. 2018.

JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ and Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, vol. 34, No 20, p. 3586-3588. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/bty386.

BREZOVSKÝ, Jan, Barbora KOZLÍKOVÁ and Jiří DAMBORSKÝ. Computational Analysis of Protein Tunnels and Channels. In Bornscheuer U., Höhne M. Protein Engineering. Methods in Molecular Biology. New York, NY: Humana Press, 2018, p. 25-42. 1685. ISBN 978-1-4939-7364-4. Available from: https://dx.doi.org/10.1007/978-1-4939-7366-8_3.

MIČAN, Jan, David BEDNÁŘ and Jiří DAMBORSKÝ. Computational Enzyme Design of Haloalkane Dehalogenases for Yperite Degradation. In XV Discussions in Structural Molecular Biology. 2018. ISSN 1805-4382.

DVOŘÁK, Pavel, David BEDNÁŘ, Pavel VAŇÁČEK, Lukáš BÁLEK, Lívia EISELLEOVÁ, Veronika ŠTĚPÁNKOVÁ, Eva ŠEBESTOVÁ, Michaela BOSÁKOVÁ, Žaneta KONEČNÁ, Stanislav MAZURENKO, Antonín KUNKA, Tereza VÁŇOVÁ, Karolína ZOUFALOVÁ, Radka CHALOUPKOVÁ, Jan BREZOVSKÝ, Pavel KREJČÍ, Zbyněk PROKOP, Petr DVOŘÁK and Jiří DAMBORSKÝ. Computer-assisted engineering of hyperstable fibroblast growth factor 2. Biotechnology and Bioengineering. New York: Wiley, 2018, vol. 115, No 4, p. 850-862. ISSN 0006-3592. Available from: https://dx.doi.org/10.1002/bit.26531.

FURMANOVÁ, Katarína, Jan BYŠKA, Eduard M. GRÖLLER, Ivan VIOLA, Jan PALEČEK and Barbora KOZLÍKOVÁ. COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions. BMC Bioinformatics. 2018, vol. 19, APR, p. 1-17. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-018-2113-6.

KICO, Iris, Nikos GRAMMALIDIS, Yiannis CHRISTIDIS and Fotis LIAROKAPIS. Digitization and Visualization of Folk Dances: A Review. Inventions. MDPI, 2018, vol. 3, No 4, p. 1-23. ISSN 2411-5134. Available from: https://dx.doi.org/10.3390/inventions3040072.

LIAROKAPIS, Fotis and Alun EVANS. Editorial for special issue on interactive virtual environments for serious games. Virtual Reality. Springer London, 2018, 22/2018, No 2, p. 89-90. ISSN 1359-4338. Available from: https://dx.doi.org/10.1007/s10055-018-0340-9.

KEROUŠ, Bojan, Filip ŠKOLA and Fotis LIAROKAPIS. EEG-based BCI and video games: a progress report. Virtual Reality. London: Springer London, 2018, vol. 22, No 2, p. 119-135. ISSN 1359-4338. Available from: https://dx.doi.org/10.1007/s10055-017-0328-x.

ŠKOLA, Filip and Fotis LIAROKAPIS. Embodied VR environment facilitates motor imagery brain–computer interface training. Computers & Graphics. Elsevier, 2018, vol. 75, Oct, p. 59-71. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2018.05.024.

KOZLÍKOVÁ, Barbora, Jiří CHMELÍK, Radek OŠLEJŠEK and Jan BYŠKA. EuroVis 2018 - 20th EG/VGTC Conference on Visualization. 2018.

SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA, Tereza NEČASOVÁ, Katsiarina MORGAENKO, Lívia EISELLEOVÁ, Lenka TESAŘOVÁ and Martin MAŠKA. FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 12, p. 2630-2641. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2018.2845884.

LIAROKAPIS, Fotis and Yiorgos CHRYSANTHOU. Foreword to the Special Section on Serious Games and Virtual Environments. Computers & Graphics. Elsevier Science, 2018, 75/2018, No 75, p. 1-2. ISSN 0097-8493.

BALÁŽIA, Michal and Petr SOJKA. Gait Recognition from Motion Capture Data. ACM Transactions on Multimedia Computing, Communications and Applications (TOMM), special issue on Representation, Analysis and Recognition of 3D Humans. New York, USA: ACM, 2018, vol. 14, 1s, p. 1-18. ISSN 1551-6857. Available from: https://dx.doi.org/10.1145/3152124.

REINKE, Annika, Matthias EISENMANN, Sinan ONOGUR, Marko STANKOVIC, Patrick SCHOLZ, Peter M FULL, Hrvoje BOGUNOVIC, Bennett A LANDMAN, Oskar MAIER, Bjoern MENZE, Gregory C SHARP, Korsuk SIRINUKUNWATTANA, Stefanie SPEIDEL, Fons VAN DER SOMMEN, Guoyan ZHENG, Henning MÜLLER, Michal KOZUBEK, Tal ARBEL, Andrew P BRADLEY, Pierre JANNIN, Annette KOPP-SCHNEIDER and Lena MAIER-HEIN. How to Exploit Weaknesses in Biomedical Challenge Design and Organization. In Alejandro F. Frangi, Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger. Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. LNCS 11073. Cham (Switzerland): Springer, 2018, p. 388-395. ISBN 978-3-030-00936-6. Available from: https://dx.doi.org/10.1007/978-3-030-00937-3_45.

ŽUŽI, Marek, Jan ČEJKA, Fabio BRUNO, Dimitrios SKARLATOS and Fotis LIAROKAPIS. Impact of Dehazing on Underwater Marker Detection for Augmented Reality. Frontiers in Robotics and AI. 2018, vol. 5, No 92, p. 1-13. ISSN 2296-9144. Available from: https://dx.doi.org/10.3389/frobt.2018.00092.

NOVOTNÝ, Vít. Implementation Notes for the Soft Cosine Measure. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, p. 1639-1642. ISBN 978-1-4503-6014-2. Available from: https://dx.doi.org/10.1145/3269206.3269317.

ČEJKA, Jan, Panagiotis AGRAFIOTIS, Fabio BRUNO, Dimitris SKARLATOS and Fotis LIAROKAPIS. Improving Marker-Based Tracking for Augmented Reality in Underwater Environments. Online. In Robert Sablatnigand, Michael Wimmer. Proc. of the Eurographics Workshop on Graphics and Cultural Heritage, The Eurographics Association, Vienna, Austria, 21-30, 2018. Vienna: The Eurographics Association, 2018, p. 21-30. ISBN 978-3-03868-057-4. Available from: https://dx.doi.org/10.2312/gch.20181337.

KLEIN, Tobias, Ludovic AUTIN, Barbora KOZLÍKOVÁ, David S. GOODSELL, Arthur OLSON, Eduard M. GRÖLLER and Ivan VIOLA. Instant Construction and Visualization of Crowded Biological Environments. IEEE Transactions on Visualization and Computer Graphics. 2018, vol. 24, No 1, p. 862-872. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2017.2744258.

JUŘÍK, Vojtěch, Čeněk ŠAŠINKA, Lukáš HERMAN, Zdeněk STACHOŇ, Petr KUBÍČEK, Pavel UGWITZ and Milan DOLEŽAL. Interakce s virtuálním 3D prostředím : od senzomotoriky ke kognici (Interaction with 3D environment : exploring sensory-motor to cognition). Online. In Šašinka, Čeněk; Strnadová, Alžběta; Šmideková, Zuzana; Juřík, Vojtěch. Kognice a umělý život 2018 : sborník příspěvků. Brno: Masarykova univerzita, 2018, p. 35-37. ISBN 978-80-88123-24-8.

URBANOVÁ, Petra, Zuzana FERKOVÁ, Marie JANDOVÁ, Mikoláš JURDA, Dominik ČERNÝ and Jiří SOCHOR. Introducing the FIDENTIS 3D Face Database. Anthropological Review. 2018, vol. 81, No 2, p. 202-223. ISSN 1898-6773.

JAVORSKÝ, Tomáš, Filip ŠKOLA, Stella SYLAIOU, João MARTINS and Fotis LIAROKAPIS. Investigating Body Transfer Illusion from Human to Monkey Body. Online. In 2018 International Conference on Intelligent Systems (IS 2018). Funchal - Madeira, Portugal, Portugal: IEEE Computer Society, 2018, p. 549-556. ISBN 978-1-5386-7097-2. Available from: https://dx.doi.org/10.1109/IS.2018.8710499.

OSTRÝ, Ctibor, Mikoláš JURDA and Helena LUKÁŠOVÁ. Markrabě Jošt Moravský a Baron František Trenck : antropologická digitální rekonstrukce podoby historické osobnosti (Margrave Jobst of Moravia and Barond Franz von der Trenck : anthropological digital reconstruction of the historical person). In PV1B115 Kingdom Come, aneb jak zkonstruovat středověk, 28. 11. 2018, Brno. 2018.

JANSOVÁ, Iveta and Zdeněk ZÁHORA. Mediální mini teorie (Media mini theory). 1st ed. Olomouc: Vydavatelství Univerzity Palackého, 2018. ISBN 978-80-244-5372-9.

SOJKA, Petr. member of Programme Committee of TSD 2018 conference. 2018.

SOJKA, Petr, Michal RŮŽIČKA and Vít NOVOTNÝ. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, p. 1923-1926. ISBN 978-1-4503-6014-2. Available from: https://dx.doi.org/10.1145/3269206.3269233.

PAPAGIANNAKIS, George, Efstratios GERONIKOLAKIS, Maria PATERAKI, Victor LOPEZ-MENCHERO, Michael TSIOUMAS, Stella SYLAIOU, Fotis LIAROKAPIS, Athina GRAMMATIKOPOULOU, Kosmas DIMITROPOULOS, Nikolaos GRAMMALIDIS, Nikolaos PARTARAKIS, George MARGETIS, Giannis DROSSIS, Martha VASSILIADI, Alan CHALMERS, Constantine STEPHANIDIS and Nadia MAGNENAT-THALMANN. Mixed Reality Gamified Presence and Storytelling for Virtual Museums. Online. In Encyclopedia of Computer Graphics and Games. Encyclopedia of Computer Graphics and Games (ECGG). Cham: Springer, 2018, p. 1-14. ISBN 978-3-319-08234-9. Available from: https://dx.doi.org/10.1007/978-3-319-08234-9_249-1.

PETERLÍK, Igor, David SVOBODA, Vladimír ULMAN, Dmitry SOROKIN and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. Online. In Simulation and Synthesis in Medical Imaging. Cham: Springer, 2018, p. 71-79. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_8.

BEČEV, Ondřej, Elis BARTEČKŮ, Robert ROMAN, Petr SOJKA, Bojan KEROUŠ, Fotios LIAROKAPIS and Martin BAREŠ. „Nikdy z tebe nic nebude!“: Biofeedback s využitím sociálního stresu ve virtuální realitě u pacientů s funkčními neurologickými poruchami. 2018.

SOROKIN, Dmitry, Igor PETERLÍK, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. Non-rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 1, p. 173-184. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2017.2734169.

NOVOTNÝ, Vít. Příprava Zpravodaje CSTUG (Preparing the CSTUG Bulletin). Zpravodaj CSTUG. Brno: CSTUG, 2018, vol. 28, 1-4, p. 1-10. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2018-1-4/1.

DVOŘÁČKOVÁ, Martina, B. RAPOSO, Petr MATULA, J. FUCHS, V. SCHUBERT, Vratislav PEŠKA, B. DESVOYES, C. GUTIERREZ and Jiří FAJKUS. Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression. Journal of Cell Science. Cambridge: Company of Biologists Ltd., 2018, vol. 131, No 2, p. nestránkováno, 12 pp. ISSN 0021-9533. Available from: https://dx.doi.org/10.1242/jcs.202416.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Šimon FARKAŠ, Barbara ŠALINGOVÁ, Kateřina KUTÁLKOVÁ, Eva VAVREČKOVÁ, Pavel MATULA, Petr MATULA, Lenka VEVERKOVÁ and Irena KRONTORÁD KOUTNÁ. Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells. Stem Cells and Development. Mary Ann Liebert, Inc. publishers, 2018, vol. 27, No 1, p. 10-22. ISSN 1547-3287. Available from: https://dx.doi.org/10.1089/scd.2017.0132.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Šimon FARKAŠ, Barbara ŠALINGOVÁ, Kateřina KUTÁLKOVÁ, Eva VAVREČKOVÁ, Pavel MATULA, Petr MATULA and Irena KRONTORÁD KOUTNÁ. Reprogramming of peripheral blood cells into hiPSCs as a source of endothelial cells. In SY-Stem symposium 2018. 2018.

CASTILLA, Carlos, Martin MAŠKA, Dmitry SOROKIN, Erik MEIJERING and Carlos ORTIZ-DE-SOLORZANO. Segmentation of Actin-Stained 3D Fluorescent Cells with Filopodial Protrusions using Convolutional Neural Networks. Online. In 15th IEEE International Symposium on Biomedical Imaging. Washington: IEEE, 2018, p. 413-417. ISBN 978-1-5386-3636-7. Available from: https://dx.doi.org/10.1109/ISBI.2018.8363605.

KOUŘIL, Pavel and Fotis LIAROKAPIS. Simulation of Underwater Excavation Using Dredging Procedures. IEEE Computer Graphics and Applications. IEEE Computer Society, 2018, vol. 38, No 2, p. 103-111. ISSN 0272-1716. Available from: https://dx.doi.org/10.1109/MCG.2018.021951637.

SOJKA, Petr, Aleš HORÁK, Ivan KOPEČEK and Karel PALA. Text, Speech and Dialogue: 21st International Conference TSD 2018, Brno, Czech Republic, September 11-14, 2018. Edited by Sojka P., Horák A., Kopeček I., Pala K. prvni. Berlin Heidelberg: Springer Verlag, 2018, 529 pp. ISBN 978-3-030-00794-2. Available from: https://dx.doi.org/10.1007/978-3-030-00794-2.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Adam PRUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Michal KOZUBEK, Jan ŠMARDA and Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. In Summer School in Translational Cancer Research 2018. 2018.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Adam PRUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Michal KOZUBEK, Jan ŠMARDA and Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. (The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures). In XIX. Meeting of Biochemists and Molecular Biologists. 2018.

VYKOPAL, Jan, Radek OŠLEJŠEK, Karolína BURSKÁ and Kristína ZÁKOPČANOVÁ. Timely Feedback in Unstructured Cybersecurity Exercises. Online. In Proceedings of Special Interest Group on Computer Science Education, Baltimore, Maryland, USA, February 21–24, 2018(SIGCSE’18). New York, NY, USA: ACM, 2018, p. 173-178. ISBN 978-1-4503-5103-4. Available from: https://dx.doi.org/10.1145/3159450.3159561.

SOJKA, Petr. Trains and Trees of Thoughts: Towards the Representation of Structural Semantics (invited talk Semiomath workshop, Zurich, 2. 3. 2018). In Semiomaths workshop. 2018.

SVOBODA, David, Tereza NEČASOVÁ, Lenka TESAŘOVÁ and Pavel ŠIMARA. Tubular Network Formation Process Using 3D Cellular Potts Model. In Gooya A., Goksel O., Oguz I., Burgos N. Simulation and Synthesis in Medical Imaging. LNCS 11037. Neuveden: Springer, 2018, p. 90-99. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_10.

NOVOTNÝ, Vít and Petr SOJKA. Weighting of Passages in Question Answering. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Twelfth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2018. Brno: Tribun EU, 2018, p. 31-40. ISBN 978-80-263-1517-9.

MAIER-HEIN, Lena, Matthias EISENMANN, Annika REINKE, Sinan ONOGUR, Marko STANKOVIC, Patrick SCHOLZ, Tal ARBEL, Hrvoje BOGUNOVIC, Andrew BRADLEY, Aaron CARASS, Carolin FELDMANN, Alejandro FRANGI, Peter FULL, Bram VAN GINNEKEN, Allan HANBURY, Katrin HONAUER, Michal KOZUBEK, Bennett LANDMAN, Keno MÄRZ, Oskar MAIER, Klaus MAIER-HEIN, Bjoern MENZE, Henning MÜLLER, Peter NEHER, Wiro NIESSEN, Nasir RAJPOOT, Gregory SHARP, Korsuk SIRINUKUNWATTANA, Stefanie SPEIDEL, Christian STOCK, Danail STOYANOV, Abdel Aziz TAHA, Fons VAN DER SOMMEN, Ching-Wei WANG, Marc-André WEBER, Guoyan ZHENG, Pierre JANNIN and Annette KOPP-SCHNEIDER. Why rankings of biomedical image analysis competitions should be interpreted with care. Nature Communications. Nature Publishing Group, 2018, vol. 9, No 5217, p. 1-13. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-018-07619-7.

SOJKA, Petr. XVIII. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XVIII. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2018.

KAMENICKÝ, Petr, Jana NEDOMOVÁ and Eliška LOMIČOVÁ. A já, nic netušen jim otevřel jsem brány. 2017.

PHILBIN-BRISCOE, Oliver, Bart SIMON, Sudhir MUDUR, Charalambos POULLIS, Selma RIZVIC, Dusanka BOSKOVIC, Fotis LIAROKAPIS, Irene KATSOURI, Stella DEMESTICHA and Dimitrios SKARLATOS. A Serious Game for Understanding Ancient Seafaring in the Mediterranean Sea. Online. In Proc. of the 9th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games 2017). Athens, Greece: IEEE Computer Society, 2017, p. 1-7. ISBN 978-1-5090-5812-9. Available from: https://dx.doi.org/10.1109/VS-GAMES.2017.8055804.

BALÁŽIA, Michal and Petr SOJKA. An Evaluation Framework and Database for MoCap-Based Gait Recognition Methods. In Miguel Colom, Bertrand Kerautret and Pascal Monasse. Proceedings of the 1st IAPR Workshop on Reproducible Research in Pattern Recognition (RRPR 2016). LNCS 10214. Switzerland: Springer International Publishing AG, 2017, p. 33-47. ISBN 978-3-319-56413-5. Available from: https://dx.doi.org/10.1007/978-3-319-56414-2_3.

DOLEŽAL, Milan, Jiří CHMELÍK and Fotis LIAROKAPIS. An Immersive Virtual Environment for Collaborative Geovisualization. Online. In 9th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games 2017). Athens, Greece: IEEE Computer Society, 2017, p. 272-275. ISBN 978-1-5090-5812-9. Available from: https://dx.doi.org/10.1109/VS-GAMES.2017.8056613.

ULMAN, Vladimír, Martin MAŠKA, Klas E G MAGNUSSON, Olaf RONNEBERGER, Carsten HAUBOLD, Nathalie HARDER, Pavel MATULA, Petr MATULA, David SVOBODA, Miroslav RADOJEVIC, Ihor SMAL, Karl ROHR, Joakim JALDÉN, Helen M BLAU, Oleh DZYUBACHYK, Boudewijn LELIEVELDT, Pengdong XIAO, Yuexiang LI, Siu-Yeung CHO, Alexandre C DUFOUR, Jean-Christophe OLIVO-MARIN, Constantino C REYES-ALDASORO, Jose A SOLIS-LEMUS, Robert BENSCH, Thomas BROX, Johannes STEGMAIER, Ralf MIKUT, Steffen WOLF, Fred A HAMPRECHT, Tiago ESTEVES, Pedro QUELHAS, Ömer DEMIREL, Lars MALMSTRÖM, Florian JUG, Pavel TOMANCAK, Erik MEIJERING, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLORZANO. An objective comparison of cell-tracking algorithms. Nature Methods. Macmillan Publishers Limited, part of Springer Nature, 2017, vol. 14, No 12, p. 1141-1152. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/nmeth.4473.

FURMANOVÁ, Katarína, Petra URBANOVÁ and Barbora KOZLÍKOVÁ. AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology. In Vítezslav Beran, Pavel Zemcík, Ivan Viola, Jirí Bittner, Jaroslav Rozman. Proceedings of the 33rd Spring Conference on Computer Graphics. Brno, Czech Republic: ACM, 2017, p. 171-179. ISBN 978-1-4503-5107-2. Available from: https://dx.doi.org/10.1145/3154353.3154363.

KONDRATĚV, Alexandr and Dmitry SOROKIN. Automatic detection of laser-induced structures in live cell fluorescent microscopy images using snakes with geometric constraints. In 23rd International Conference on Pattern Recognition, ICPR 2016. Cancun, Mexico: Institute of Electrical and Electronics Engineers Inc., 2017, p. 331-336. ISBN 978-1-5090-4847-2. Available from: https://dx.doi.org/10.1109/ICPR.2016.7899655.

KEROUŠ, Bojan and Fotis LIAROKAPIS. BrainChat - A Collaborative Augmented Reality Brain Interface for Message Communication. In Proc. of the International Symposium on Mixed and Augmented Reality (ISMAR 2017) - Adjunct Proceedings. France: IEEE Computer Society, 2017, p. 279-283. ISBN 978-0-7695-6327-5. Available from: https://dx.doi.org/10.1109/ISMAR-Adjunct.2017.91.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock 1.0. 2017.

KOCINCOVÁ, Lucia, Miroslava JAREŠOVÁ, Jan BYŠKA, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics. BioMed Central, 2017, vol. 18, No 23, p. 1-12. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-016-1449-z.

BREZOVSKÝ, Jan, Barbora KOZLÍKOVÁ and Jiří DAMBORSKÝ. Computational Analysis of Protein Tunnels and Channels. In Editors: Bornscheuer, Uwe T., Höhne, Matthias. PROTEIN ENGINEERING. METHODS AND PROTOCOLS. New York: Springer, 2017, p. 25-42. ISBN 978-1-4939-7366-8.

ANOSHINA, Nadezhda A., Andrey S. KRYLOV and Dmitry SOROKIN. Correlation-based 2D Registration Method for Single Particle Cryo-EM Images. Online. In Seventh International Conference on Image Processing Theory, Tools and Applications (IPTA), 2017. Montreal: IEEE, 2017, p. 1-6. ISBN 978-1-5386-1842-4. Available from: https://dx.doi.org/10.1109/IPTA.2017.8310125.

LUKÁŠOVÁ, Helena. Defining Pressure: Examining the State of Objects in Contemporary Making. In International Sculture Center Conference 2017. 2017.

BRUNO, Fabio, Antonio LAGUDI, Gerardo RITACCO, Panagiotis AGRAFIOTIS, Dimitrios SKARLATOS, Jan ČEJKA, Pavel KOUŘIL, Fotis LIAROKAPIS, Oliver PHILPIN-BRISCOE, Charalambos POULLIS, Sudhir MUDUR and Bart SIMON. Development and integration of digital technologies addressed to raise awareness and access to European underwater cultural heritage. An overview of the H2020 i-MARECULTURE project. In Proc. of OCEANS 2017. Aberdeen; United Kingdom: IEEE, 2017, p. 1-10. ISBN 978-1-5090-5278-3. Available from: https://dx.doi.org/10.1109/OCEANSE.2017.8084984.

PANIAGUA CORREAS, Candelas Maria, Anna BÍLKOVÁ, Philip Anthony P. JACKSON, Siarhei DABRAVOLSKI, Willi Sascha RIBER, Vojtěch DIDI, Josef HOUSER, Nora GIGLI-BISCEGLIA, Michaela WIMMEROVÁ, Eva BUDINSKÁ, Thorsten HAMANN and Jan HEJÁTKO. Dirigent proteins in plants: modulating cell wall metabolism during abiotic and biotic stress exposure. Journal of Experimental Botany. Oxford: OXFORD UNIV PRESS, 2017, vol. 68, No 13, p. 3287-3301. ISSN 0022-0957. Available from: https://dx.doi.org/10.1093/jxb/erx141.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Pavel MATULA, Stanislav STEJSKAL, Aleš HAMPL and Irena KRONTORÁD KOUTNÁ. DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing. Stem Cell Research & Therapy. Springer Nature, 2017, vol. 8, No 73, p. 1-13. ISSN 1757-6512. Available from: https://dx.doi.org/10.1186/s13287-017-0522-5.

LIAROKAPIS, Fotis and Kurt DEBATTISTA. Editorial for special issue on serious games and education. Journal of Computing in Higher Education. Springer, 2017, 29/2017, No 3, p. 514-515. ISSN 1042-1726. Available from: https://dx.doi.org/10.1007/s12528-017-9147-z.

ŠVAŘÍČEK, Roman and Jiří CHMELÍK. EduCoM 1.0. Mobilní aplikace pro sběr dat o výukové komunikaci (EduCoM 1.0. Mobile app for data collection in the field of classroom discourse). 2017.

VOURVOPOULOS, Athanasios, Sergi BERMUDEZ I BADIA and Fotis LIAROKAPIS. EEG correlates of video game experience and user profile in motor-imagery-based brain–computer interaction. The Visual Computer. 2017, vol. 33, No 4, p. 533-546. ISSN 0178-2789. Available from: https://dx.doi.org/10.1007/s00371-016-1304-2.

SYLAIOU, Stella, Katerina MANIA, Ioannis PALIOKAS, Laia PUJOL-TOST, Vassilis KILLINTZIS and Fotis LIAROKAPIS. Exploring the educational impact of diverse technologies in online Virtual Museums. International Journal of Arts and Technology (IJART). Inderscience Publishers, 2017, vol. 10, No 1, p. 58-84. ISSN 1754-8853. Available from: https://dx.doi.org/10.1504/IJART.2017.10004738.

RŮŽIČKA, Michal, Vít NOVOTNÝ, Petr SOJKA, Jan POMIKÁLEK and Radim ŘEHŮŘEK. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines. Online. In CEUR Workshop Proceedings, Vol. 1923. Vienna, Austria: Neuveden, 2017, p. 1-12. ISSN 1613-0073.

SEČKÁŘ, Petr and David SVOBODA. FTutor: An Interactive Guide to the Fundamentals of Frequency Analysis. Computer Applications in Engineering Education. Wiley, 2017, vol. 25, No 3, p. 508-520. ISSN 1061-3773. Available from: https://dx.doi.org/10.1002/cae.21817.

CHALÁS, Igor, Petra URBANOVÁ, Vojtěch JUŘÍK, Zuzana FERKOVÁ, Marie JANDOVÁ, Jiří SOCHOR and Barbora KOZLÍKOVÁ. Generating various composite human faces from real 3D facial images. The Visual Computer. Springer-Verlag, 2017, vol. 33, No 4, p. 443-458. ISSN 0178-2789. Available from: https://dx.doi.org/10.1007/s00371-016-1277-1.

LUKÁŠOVÁ, Helena. Generativní umění (Generative Art). In Festival Prototyp. 2017.

DRAHANSKÝ, Martin, Martin SPURNÝ and Tomáš GOLDMANN. Gesichtsdetektion und -erkennung in Videos aus öffentlichen Kamerasystemen. DuD - Datenschutz und Datensicherheit. Wiesbaden: Springer Verlag, 2017, roč. 41, č. 7, p. 415-421. ISSN 1614-0702. Available from: https://dx.doi.org/10.1007/s11623-017-0804-1.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. Hematopoietic developmental potential of human pluripotent stem cell lines is accompanied by the morphology of embryoid bodies and the expression of endodermal and hematopoietic markers. Cellular Reprogramming. 2017, vol. 19, No 4, p. 270-284. ISSN 2152-4971. Available from: https://dx.doi.org/10.1089/cell.2016.0042.

BALÁŽIA, Michal and Konstantinos N. PLATANIOTIS. Human Gait Recognition from Motion Capture Data in Signature Poses. IET Biometrics. London, UK: IET, 2017, vol. 6, No 2, p. 129-137. ISSN 2047-4938. Available from: https://dx.doi.org/10.1049/iet-bmt.2015.0072.

ANGUIANO, María, Carlos CASTILLA, Martin MAŠKA, Cristina EDERRA, Rafael PELÁEZ, Xabier MORALES, Gorka MUÑOZ-ARRIETA, Maite MUJIKA, Michal KOZUBEK, Arrate MUÑOZ-BARRUTIA, Ana ROUZAUT, Sergio ARANA, José Manuel GARCIA-AZNAR and Carlos ORTIZ-DE-SOLORZANO. Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis. PLoS ONE. 2017, vol. 12, No 2, p. 1-24. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0171417.

POPOVICI, Vlad, Eva BUDINSKÁ, Ladislav DUŠEK, Michal KOZUBEK and Fred BOSMAN. Image-based surrogate biomarkers for molecular subtypes of colorectal cancer. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 13, p. 2002-2009. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx027.

FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics. BioMed Central, 2017, vol. 18, No 22, p. 1-16. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-016-1448-0.

VOURVOPOULOS, Athanasios, Evangelos NIFORATOS, Michal HLINKA, Filip ŠKOLA and Fotis LIAROKAPIS. Investigating the Effect of User Profile during Training for BCI-based Games. Online. In Proc. of the 9th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games 2017), IEEE Computer Society, Athens, Greece, 6-8 September. Athens, Greece: IEEE Computer Society, 2017, p. 117-124. ISBN 978-1-5090-5812-9. Available from: https://dx.doi.org/10.1109/VS-GAMES.2017.8056579.

RŮŽIČKA, Michal. Math Information Retrieval for Digital Libraries. Brno: Masaryk University, Faculty of Informatics, 2017, 144 pp. Doctoral Thesis.

SOJKA, Petr. member of Programme Committee of TSD 2017 conference. 2017.

SVOBODA, David and Vladimír ULMAN. MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy. IEEE Transactions on Medical Imaging. IEEE Engineering in Medicine and Biology Society, 2017, vol. 36, No 1, p. 310-321. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2016.2606545.

SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia. Online. In 14th IEEE International Symposium on Biomedical Imaging. Melbourne: IEEE, 2017, p. 822-826. ISBN 978-1-5090-1172-8. Available from: https://dx.doi.org/10.1109/ISBI.2017.7950644.

SVOBODA, David and Michal KOZUBEK. Multimodal Simulations in Live Cell Imaging. In Tsaftaris S., Gooya A., Frangi A., Prince J. Simulation and Synthesis in Medical Imaging. LNCS 10557. Neuveden: Springer, 2017, p. 89-98. ISBN 978-3-319-68126-9. Available from: https://dx.doi.org/10.1007/978-3-319-68127-6_10.

BARTOŠEK, Miroslav, Michal RŮŽIČKA and Václav STUPKA. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to (GDPR Regulation and its Implementation at Universities in the Czech Republic - how to do it). In EUNIS-CZ. Dopad zavedení novely VŠ zákona do IS vysokých škol. 1st ed. Plzeň: Západočeská univerzita v Plzni, 2017, p. 5-14. ISBN 978-80-261-0713-2.

MASKOVA, P., B. RADOCHOVA, Z. LHOTAKOVA, Jan MICHÁLEK and H. LIPAVSKA. Nonstructural carbohydrate-balance response to long-term elevated CO2 exposure in European beech and Norway spruce mixed cultures: biochemical and ultrastructural responses. Canadian journal of forest research. Ottawa: The national research council, 2017, vol. 47, No 11, p. 1488-1494. ISSN 0045-5067. Available from: https://dx.doi.org/10.1139/cjfr-2017-0083.

MAŠKA, Martin and Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. Online. In 16th IEEE International Conference on Computer Vision Workshops. Venice: IEEE, 2017, p. 11-17. ISBN 978-1-5386-1034-3. Available from: https://dx.doi.org/10.1109/ICCVW.2017.8.

WILLEMSEN, Joschka, Oliver WICHT, Julia WOLANSKI, Nina BAUR, Sandra BASTIAN, Darya HAAS, Petr MATULA, Bettina KNAPP, Laurene MEYNIEL-SCHICKLIN, Chen WANG, Ralf BARTENSCHLAGER, Volker LOHMANN, Karl ROHR, Holger ERFLE, Lars KADERALI, Joseph MARCOTRIGIANO, Andreas PICHLMAIR and Marco BINDER. Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening. Molecular Cell. CAMBRIDGE: CELL PRESS, 2017, vol. 65, No 3, p. "403"-"415.e8", 21 pp. ISSN 1097-2765. Available from: https://dx.doi.org/10.1016/j.molcel.2016.12.021.

ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ and Šimon FARKAŠ. POTENTIAL OF hiPSCs DERIVED FROM DIFFERENT CELL TYPES TO DIFFERENTIATE INTO FUNCTIONAL ENDOTHELIAL CELLS. In ISSCR 2017 Annual Meeting. 2017.

DEBATTISTA, Kurt and Fotis LIAROKAPIS. Preface to the special issue on VS-Games 2015. Visual Computer. The Visual Computer, 2017, 33/2017, No 4, p. 399-400. ISSN 0178-2789. Available from: https://dx.doi.org/10.1007/s00371-017-1351-3.

MALZAHN, Jan, Barbora KOZLÍKOVÁ and Timo ROPINSKI. Protein Tunnel Reprojection for Physico-Chemical Property Analysis. Online. In S. Bruckner, A. Hennemuth, and B. Kainz. Eurographics Workshop on Visual Computing for Biology and Medicine. Bremen, Germany: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017, p. nestránkováno, 10 pp. ISBN 978-3-03868-036-9.

LUKÁŠOVÁ, Helena. Sborník - aplikace nových technologií v sochařské praxi (Proceeding - Application of New Technologies in Sculpture Making). 2017.

HAMPL, Aleš, Hana KOTASOVÁ, Zuzana GARLÍKOVÁ and Irena KRONTORÁD KOUTNÁ. Self-Renewing Early Lung Epithelial Progenitor Cells Differentiated From Human Embryonic Stem Cells. In ISSCR 2017 Annual Meeting, Boston, USA, 14.-17.6.2017. 2017.

SHERWANI, Moiz Khan, Petr SOJKA and Francesco CALIMERI. Semantic Similarities between Locations based on Ontology. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Eleventh Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2017. Brno: Tribun EU, 2017, p. 85-94. ISBN 978-80-263-1340-3.

RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ and Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, p. 81-90. ISBN 978-1-945626-62-3. Available from: https://dx.doi.org/10.18653/v1/W17-2611.

FERKOVÁ, Zuzana, Marek ŽUŽI, Petra URBANOVÁ and Petr MATULA. Single image reconstruction of human faces using database of depth images. Online. In 9th International Conference on Virtual Worlds and Games for Serious Applications (VS-Games 2017). Athens, Greece: IEEE Computer Society, 2017, p. 109-116. ISBN 978-1-5090-5812-9. Available from: https://dx.doi.org/10.1109/VS-GAMES.2017.8056578.

ŘEHÁKOVÁ, Daniela, Kateřina KUTÁLKOVÁ and Irena KRONTORÁD KOUTNÁ. Standardized hiPSCs culture – vitronectin coating for cGMP compliant protocol. Online. Olomouc: Univerzita Palackého, 2017, p. 25-28, 57 pp. ISSN 1804-7521.

JURDA, Mikoláš, Petra URBANOVÁ and Jiří CHMELÍK. TESTING FEASIBILITY OF VIRTUAL REALITY HEADSET FOR PC-ASSISTED RESTORATION OF SKELETAL REMAINS. In 21st Triennial Meeting of the International-Association-of-Forensic-Sciences (IAFS). 2017. ISSN 0379-0738.

SOJKA, Petr and Vít NOVOTNÝ. TeX in Schools? Just Say Yes: the Use Case of TeX Usage at the Faculty of Informatics, Masaryk University. In XXV Międzynarodowa Konferencja Użytkowników Systemu TeX, Materiały konferencyjne. 2017. ISBN 978-83-939016-4-7.

SOJKA, Petr and Vít NOVOTNÝ. TeX in Schools? Just Say Yes: the Use Case of TeX Usage at the Faculty of Informatics, Masaryk University. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2017, roč. 38, No 2, p. 175-184. ISSN 0896-3207.

SOJKA, Petr and Vít NOVOTNÝ. TeX na školách? Samozřejmě ano! Příklad užití TeXu na Fakultě informatiky Masarykovy univerzity (TeX in Schools? Just Say Yes: the Use Case of TeX Usage at the Faculty of Informatics, Masaryk University). Zpravodaj CSTUG. Brno: CSTUG, 2017, vol. 27, 3-4, p. 118-137. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2017-3-4/118.

STACHOŇ, Zdeněk, Petr KUBÍČEK, Čeněk ŠAŠINKA, Jiří CHMELÍK, Klára KUBÍČKOVÁ, Lukáš HERMAN and Vojtěch JUŘÍK. The Complex Tasks with 3D Cartographic Visualization – The Role of Immersion and Interactivity. In 28th International Cartographic Conference. 2017.

ANDERSON, Eike, Andrew DUCHOWSKI, Fotis LIAROKAPIS and Adam REDFORD. The New CGEMS - Preparing the Computer Graphics Educational Materials Source to Meet the Needs of Educators. Online. In Proc of the 38th Annual Conference of the European Association for Computer (Eurographics 2017), Education Program, Lyon, France. Lyon, France: The Eurographics Association, 2017, p. 63-67. ISSN 1017-4656. Available from: https://dx.doi.org/10.2312/eged.20171028.

OŠLEJŠEK, Radek, Dalibor TOTH, Zdenek EICHLER and Karolína BURSKÁ. Towards a Unified Data Storage and Generic Visualizations in Cyber Ranges. In Mark Scanlon, Nhien-An Le-Khac. Proceedings of the 16th European Conference on Cyber Warfare and Security ECCWS 2017. UK: Academic Conferences and Publishing International Limited, 2017, p. 298-306. ISBN 978-1-911218-43-2.

LUKÁŠOVÁ, Helena and Rees MICHAEL. Trans_Forma / The Bone Phone. 2017.

LUKÁŠOVÁ, Helena. Trans_Forma / The Bone Phone. 2017.

VONÁSEK, Vojtěch and Barbora KOZLÍKOVÁ. Tunnel detection in protein structures using sampling-based motion planning. Online. In Krzysztof Kozłowski. Robot Motion and Control (RoMoCo), 2017 11th International Workshop on. Wasowo, Poland: IEEE, 2017, p. 185-192. ISBN 978-1-5386-3926-9. Available from: https://dx.doi.org/10.1109/RoMoCo.2017.8003911.

LIAROKAPIS, Fotis. Using Activity Led Learning for Teaching Computer Graphics Principles Through Augmented Reality. Online. In Proc of the 38th Annual Conference of the European Association for Computer (Eurographics 2017), Education Program, Lyon, France. Lyon, France: The Eurographics Association, 2017, p. 43-50. ISSN 1017-4656. Available from: https://dx.doi.org/10.2312/eged.20171025.

NOVOTNÝ, Vít. Using Markdown Inside TeX Documents. In Tomasz Przechlewski, Karl Berry, Jerzy Ludwichowski. XXV Międzynarodowa Konferencja Użytkowników Systemu TeX, Materiały konferencyjne. Portland, OR 97208-2311, U.S.A: Polska Grupa Użytkowników systemu TeX – GUST, 2017, p. 50-53. ISBN 978-83-939016-4-7.

NOVOTNÝ, Vít. Using Markdown Inside TeX Documents. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2017, roč. 38, No 2, p. 214-217. ISSN 0896-3207.

STUCHLÍK, Radim, Petr KUBÍČEK, Zdeněk STACHOŇ, Lukáš HERMAN, Jiří CHMELÍK, Michal SEDLÁK, Fotios LIAROKAPIS, Pavel UGWITZ, Vojtěch JUŘÍK, Kateřina CHMELAŘOVÁ, Čeněk ŠAŠINKA, Tomáš URBÁNEK, Radovan ŠIKL and Hana SVATOŇOVÁ. Utilization of virtual reality for teaching 3D tasks in geography. In CGE Lisbon Symposium 2017: Inegrating Knowledge and Understanding in Geography Education. 2017.

STUCHLÍK, Radim, Zdeněk STACHOŇ, Jiří CHMELÍK, Lukáš HERMAN and Petr KUBÍČEK. Utilization of virtual reality for teaching 3D tasks in geography. In IGU - Commission on Geographical Education Lisbon Symposium. 2017.

CHMELÍK, Jiří and Mikoláš JURDA. VEAAR - Virtual Environment for Archaeological Artefacts Restoration. Online. In Spencer, SN. VRST'17: PROCEEDINGS OF THE 23RD ACM SYMPOSIUM ON VIRTUAL REALITY SOFTWARE AND TECHNOLOGY. NEW YORK: ASSOC COMPUTING MACHINERY, 2017, p. 1-2. ISBN 978-1-4503-5548-3. Available from: https://dx.doi.org/10.1145/3139131.3141780.

NOVOTNÝ, Vít. Vector Space Representations in Information Retrieval. Brno: Fakulta Informatiky Masarykovy Univerzity, 2017, 56 pp.

KOZLÍKOVÁ, Barbora, Michael KRONE, Martin FALK, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK and Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art Revisited. Computer Graphics Forum. Wiley-Blackwell, 2017, vol. 36, No 8, p. 178-204. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.13072.

KUBÍČEK, Petr, Zdeněk STACHOŇ, Filip MÁLEK, Čeněk ŠAŠINKA, Lukáš HERMAN, Jiří CHMELÍK and Hana SVATOŇOVÁ. Vybrané uživatelské aspekty trojrozměrné vizualizace. 2017. ISBN 978-80-7494-351-5.

VAD, Viktor, Jan BYŠKA, Adam JURČÍK, Ivan VIOLA, Eduard M. GRÖLLER, Helwig HAUSER, Sérgio Manuel MARQUES, Jiří DAMBORSKÝ and Barbora KOZLÍKOVÁ. Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. Online. In S. Bruckner, A. Hennemuth, and B. Kainz. Eurographics Workshop on Visual Computing for Biology and Medicine. Bremen, Germany: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017, p. 33-42. ISBN 978-3-03868-036-9.

JUŘÍK, Vojtěch, Lukáš HERMAN, Čeněk ŠAŠINKA, Zdeněk STACHOŇ and Jiří CHMELÍK. When the Display Matters : A Multifaceted Perspective on 3D Geovisualizations. Open Geosciences. Berlin: De Gruyter Open, 2017, vol. 9, No 1, p. 89-100. ISSN 2391-5447. Available from: https://dx.doi.org/10.1515/geo-2017-0007.

SOJKA, Petr. XVII. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XVII. Film Festival of Faculty of Informatics, Masaryk University (FF FI MU)). 2017.

BALÁŽIA, Michal and Petr SOJKA. You Are How You Walk: Uncooperative MoCap Gait Identification for Video Surveillance with Incomplete and Noisy Data. Online. In Ross Beveridge, Liang Wang, Mark Nixon. Proceedings of the 3rd IEEE/IAPR International Joint Conference on Biometrics (IJCB 2017). USA: IEEE, 2017, p. 208-215. ISBN 978-1-5386-1124-1. Available from: https://dx.doi.org/10.1109/BTAS.2017.8272700.

LIAROKAPIS, Fotis, Pavel KOUŘIL, Panagiotis AGRAFIOTIS, Stella DEMESTICHA, Jiří CHMELÍK and Dimitrios SKARLATOS. 3D Modelling and Mapping For Virtual Exploration of Underwater Archaeology Assets. Online. In Proc. of the International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences (ISPRS), XLII-2/W3. Napflio, Greece: International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences (ISPRS), 2017, p. 425-431. ISBN 978-1-5108-2366-2. Available from: https://dx.doi.org/10.5194/isprs-archives-XLII-2-W3-425-2017.

JURČÍK, Adam, Julius PARULEK, Jiří SOCHOR and Barbora KOZLÍKOVÁ. Accelerated Visualization of Transparent Molecular Surfaces in Molecular Dynamics. In IEEE Pacific Visualization Symposium 2016. Taipei, Taiwan: IEEE, 2016, p. 112-119. ISBN 978-1-5090-1451-4. Available from: https://dx.doi.org/10.1109/PACIFICVIS.2016.7465258.

FRANEK, Michal, Jana SUCHÁNKOVÁ, Petra ŘEZNÍČKOVÁ-PODLOUČKOVÁ, Jana KREJČÍ, Soňa LEGARTOVÁ, Stanislav KOZUBEK, J VEČEŘA, Dmitry SOROKIN and Eva BÁRTOVÁ. Advanced Image Acquisition and Analytical Techniques for Studies of Living Cells and Tissue Sections. Microscopy and Microanalysis. Saarbrücken: Cambridge University Press, 2016, vol. 22, No 2, p. 326-341. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927616000052.

BYŠKA, Jan, Mathieu Le MUZIC, Eduard GRÖLLER, Ivan VIOLA and Barbora KOZLÍKOVÁ. AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2016, vol. 22, No 1, p. 747-756. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2015.2467434.

VONÁSEK, Vojtěch and Barbora KOZLÍKOVÁ. Application of Sampling-based Path Planning for Tunnel Detection in Dynamic Protein Structures. Online. In MMAR: 21st International Conference on Methods and Models in Automation and Robotics. Poland: IEEE, 2016, p. 1010-1015. ISBN 978-1-5090-1866-6. Available from: https://dx.doi.org/10.1109/MMAR.2016.7575276.

ŠTĚPKA, Karel, Martin MAŠKA, Jakub Jozef PÁLENIK, Vendula POSPÍCHALOVÁ, Anna KOTRBOVÁ, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Aleš HAMPL, Vítězslav BRYJA and Pavel MATULA. Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. In Gang Hua, Hervé Jégou. Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I. Cham, Switzerland: Springer International Publishing, 2016, p. 318-325. ISBN 978-3-319-46603-3. Available from: https://dx.doi.org/10.1007/978-3-319-46604-0_23.

KONDRAT'EV, Alexandr and Dmitry SOROKIN. Automatic Detection of Laser-Induced Structures in Live Cell Fluorescent Microscopy Images Using Snakes with Geometric Constraints. Online. In IEEE 23rd International Conference on Pattern Recognition (ICPR). Not specified: IEEE, 2016, p. 326-331. ISBN 978-1-5090-4846-5. Available from: https://dx.doi.org/10.1109/ICPR.2016.7899655.

CHMELÍK, Jiří, Anna RONOVSKÁ and Štefan NOVOSAD. Body Motion Visualisation. In Šobáňová Petra. Useful Symbiosis: Science, Technology, Art & Art Education. First Edition. Olomouc: Univerzita Palackého v Olomouc, 2016, p. 315-348. ISBN 978-80-244-4853-4.

KEROUŠ, Bojan and Fotis LIAROKAPIS. Brain-Computer Interfaces - A Survey on Interactive Virtual Environments. In Proc. of the 8th International Conference on Games and Virtual Worlds for Serious Applications (VS-Games 2016). Barcelona: IEEE, 2016, p. 1-4. ISBN 978-1-5090-2722-4. Available from: https://dx.doi.org/10.1109/VS-GAMES.2016.7590339.

PAVELKA, Antonín, Eva ŠEBESTOVÁ, Barbora KOZLÍKOVÁ, Jan BREZOVSKÝ, Jiří SOCHOR and Jiří DAMBORSKÝ. CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE/ACM Transactions on Computational Biology and Bioinformatics. IEEE Computer Society, 2016, vol. 13, No 3, p. 505 - 517. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2015.2459680.

FIALEK, Szymon and Fotis LIAROKAPIS. Comparing Two Commercial Brain Computer Interfaces for Serious Games and Virtual Environments. Online. In Emotion in Games - Theory and Praxis. Berlin: Springer International Publishing, 2016, p. 103-117. Part II, Volume 4. ISBN 978-3-319-41314-3. Available from: https://dx.doi.org/10.1007/978-3-319-41316-7_6.

LUKÁŠOVÁ, Helena. Digitální výroba a nové podoby designu, konference Design na hranici, UTB Zlín (Digital Fabrication and New Characteristics of Design, konference Design on the Border, UTB Zlin). 2016.

ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ and Pavel MATULA. DNA double strand breaks detection in pluripotent stem cells with regard to cell cycle stages. In ISSCR 2016 Annual Meeting. 2016.

JUŘÍK, Vojtěch, Jan NEHYBA, Čeněk ŠAŠINKA, Kamila VLČKOVÁ, Kateřina CHMELAŘOVÁ, Jan POSPÍCHAL, Pavel UGWITZ and Jiří CHMELÍK. Embodied Morality : The influence of body on moral judgement. In Sociální procesy a osobnost 2016, 12.-14. 9. 2016, Nový Smokovec. 2016.

ČEJKA, Jan. Evaluation of Continuous Collision Detection Accelerated with Tetrahedral Structures. Online. In Proceedings of the 32nd Spring Conference on Computer Graphics (SCCG '16). New York, NY, USA: ACM, 2016, p. 17-23. ISBN 978-1-4503-4436-4. Available from: https://dx.doi.org/10.1145/2948628.2948639.

PALEČEK, Jan, Stephan GRUBER, Lucie VONDROVÁ, Marek ADAMUS, Kateřina ZÁBRADY, Lenka JURČIŠINOVÁ, Saskia N van der CRABBEN, Marije P HENNUS, Grant MCGREGOR, Deborah I RITTER, Alan R LEHMANN, Antony W OLIVER, Barbora KOZLÍKOVÁ, Sharon E PLON, Johanne M MURRAY and Gijs van HAAFTEN. Evolution and functions of SMC complexes: new SMC5/6 insights. In Central European Genome Stability and Damage Meeting. 2016.

BAKAOUKAS, Anastasios, Coada FLORIN and Fotis LIAROKAPIS. Examining Brain Activity While Playing Computer Games. Journal on Multimodal Interfaces. Springer, 2016, vol. 10, No 1, p. 13-29. ISSN 1783-7677. Available from: https://dx.doi.org/10.1007/s12193-015-0205-4.

ŠKOLA, Filip and Fotis LIAROKAPIS. Examining the effect of body ownership in immersive virtual and augmented reality environments. Visual Computer. Springer Berlin Heidelberg, 2016, vol. 32, 6-8, p. 761-770. ISSN 0178-2789. Available from: https://dx.doi.org/10.1007/s00371-016-1246-8.

STŘELÁK, David, Filip ŠKOLA and Fotis LIAROKAPIS. Examining User Experiences in a Mobile Augmented Reality Tourist Guide. Online. In Proc. of the 9th International Conference on PErvasive Technologies Related to Assistive Environments (Petra 2016), ACM Press, Corfu Island, Greece, 29 June - 1 July. Corfu, Greece: ACM Press, 2016, p. 1-8. ISBN 978-1-4503-4337-4. Available from: https://dx.doi.org/10.1145/2910674.2935835.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Pavel MATULA and Irena KRONTORÁD KOUTNÁ. Genomic Stability of the Cells during hiPSC Reprogramming and Endothelial Differentiation. In 12th International Congress of Cell Biology. 2016.

KOZUBEK, Michal. Challenges and Benchmarks in Bioimage Analysis. Online. In DeVos WH, Munck S, Timmermans JP. Focus on Bio-Image Informatics. Berlin: Springer, 2016, p. 231-262. Advances in Anatomy, Embryology and Cell Biology 219. ISBN 978-3-319-28547-4. Available from: https://dx.doi.org/10.1007/978-3-319-28549-8_9.

JUŘÍK, Vojtěch, Lukáš HERMAN, Čeněk ŠAŠINKA, Zdeněk STACHOŇ and Jiří CHMELÍK. Is More Less? How 3D visualization affects cognition. In Oslavy 90. výročí založení Psychologického ústavu FF MU, 10.5. 2016, Brno. 2016.

BALÁŽIA, Michal and Petr SOJKA. Learning Robust Features for Gait Recognition by Maximum Margin Criterion. In Antonio Robles-Kelly, Marco Loog, Battista Biggio, Francisco Escolano, Richard Wilson. Proceedings of the joint IAPR International Workshops on Structural and Syntactic Pattern Recognition (SSPR 2016) and Statistical Techniques in Pattern Recognition (SPR 2016). LNCS 10029. Switzerland: Springer International Publishing AG, 2016, p. 585-586. ISBN 978-3-319-49054-0. Available from: https://dx.doi.org/10.1007/978-3-319-49055-7.

BALÁŽIA, Michal and Petr SOJKA. Learning Robust Features for Gait Recognition by Maximum Margin Criterion. Online. In Eduardo Bayro-Corrochano, Gabrielle Sanniti di Baja, Gérard Medioni. Proceedings of the 23rd IEEE/IAPR International Conference on Pattern Recognition (ICPR 2016). USA: IEEE, 2016, p. 901-906. ISBN 978-1-5090-4847-2. Available from: https://dx.doi.org/10.1109/ICPR.2016.7899750.

LEGARTOVÁ, Soňa, Petra ŘEZNÍČKOVÁ-PODLOUČKOVÁ, Barbora MALYŠKOVÁ, Thomas KÜNTZIGER, Philippe COLLAS, Dušan CMARKO, Ivan RAŠKA, Dmitry SOROKIN, Stanislav KOZUBEK and Eva BÁRTOVÁ. Localized Movement and Levels of 53BP1 Protein Are Changed by gamma-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry [IF=2.778 (1990)]. Wiley-Liss, 2016, vol. 117, No 11, p. 2583-2596. ISSN 0730-2312. Available from: https://dx.doi.org/10.1002/jcb.25551.

VONDROVÁ, Lucie, Matej FABIŠIK, Matej NOCIAR, Barbora KOZLÍKOVÁ and Jan PALEČEK. Mapping of Smc6-Nse3 and Smc6-Nse4 interactions within the S.pombe Smc5/6 complex. In Integrative modelling of biomolecular interactions. 2016.

RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, p. 331-337. ISBN 978-4-86049-071-3.

SOJKA, Petr and Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.

SOJKA, Petr. member of Programme Committee of DEIMS 2016. The 3rd International Workshop on "Digitization and E-Inclusion in Mathematics and Science 2016", 2016.

SOJKA, Petr. member of Programme Committee of TSD 2016 conference. Programme Committee of The 19th International Conference on Text, Speech and Dialogue, 2016.

VINKLER, Marek, Vlastimil HAVRAN, Jiří BITTNER and Jiří SOCHOR. Parallel On-Demand Hierarchy Construction on Contemporary GPUs. IEEE Transactions on Visualization and Computer Graphics. USA: IEEE, 2016, vol. 22, No 7, p. 1886-1898. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2015.2465898.

ŠALINGOVÁ, Barbara, Pavel ŠIMARA, Petr SYNEK, Lenka ZAJÍČKOVÁ, Zuzana NICHTOVÁ and Irena KRONTORÁD KOUTNÁ. Paramagnetic nanoparticles in stem cell therapy. In Bioimplantologie. 2016.

HUMPOLÍČEK, Pavel and Jiří CHMELÍK. PC hra, která pomáhá dětem s autismem. Česká televize, Věda 24, 2016.

URBANOVÁ, Petra and Igor CHALÁS. Performance of Matching Algorithms in Non-Standard Expression-Variant Faces. In Proceedings of the 68th Annual Scientific Meeting of the American Academy of Forensic Sciences. 2016.

KONECNY, Richard, Stella SYLAIOU and Fotis LIAROKAPIS. Procedural Modeling in Archaeology: Approximating Ionic Style Columns for Games. In Proc. of the 8th International Conference on Games and Virtual Worlds for Serious Applications (VS-Games 2016). Barcelona: IEEE, 2016, p. 1-8. ISBN 978-1-5090-2722-4. Available from: https://dx.doi.org/10.1109/VS-GAMES.2016.7590358.

SKARLATOS, Dimitrios, Panagiotis AGRAFIOTIS, Tibor BALOGH, Fabio BRUNO, Filipe CASTRO, Barbara DAVIDDE PETRIAGGI, Stella DEMESTICHA, Anastasios DOULAMIS, Pierre DRAP, Andreas GEORGOPOULOS, Fotos KIKILLOS, Phaedon KYRIAKIDIS, Fotis LIAROKAPIS, Charalampos POULLIS and Selma RIZVIC. Project iMARECULTURE: Advanced VR, iMmersive Serious Games and Augmented REality as Tools to Raise Awareness and Access to European Underwater CULTURal heritagE. Online. In Digital Heritage. Progress in Cultural Heritage: Documentation, Preservation, and Protection, Volume 10058 of the series Lecture Notes in Computer Science. Cyprus: Springer, 2016, p. 805-813. 10058. ISBN 978-3-319-48495-2. Available from: https://dx.doi.org/10.1007/978-3-319-48496-9_64.

MELICHAR, Marek, Jan HUTAŘ, Michal RŮŽIČKA, Zdeněk HRUŠKA, Zdeněk VAŠEK, Miroslav BARTOŠEK and Martin LHOTÁK. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách (ArcLib Project: Designing Solution for Long-term Preservation in Czech Libraries). IT lib. Bratislava: Centrum vedecko-technických informácií SR, 2016, vol. 20, No 2, p. 13-17. ISSN 1335-793X.

MUSINOVA, Yana R., Olga M. LISITSYNA, Dmitry SOROKIN, Eugene A. ARIFULIN, Tatiana A. SMIRNOVA, Roman A. ZINOVKIN, Daria M. POTASHNIKOVA, Yegor S. VASSETZKY and Eugene V. SHEVAL. RNA-dependent disassembly of nuclear bodies. Journal of Cell Science. The Company of Biologists Ltd., 2016, vol. 129, No 24, p. 4509-4520. ISSN 0021-9533. Available from: https://dx.doi.org/10.1242/jcs.189142.

LIAROKAPIS, Fotis. Roma Nova - Teaching History with CG and BCI. In Dörner, R., Göbel, S., Effelsberg, W., Wiemeyer, J. (eds). Serious Games: Foundations, Concepts and Practice. Springer International Publishing, 2016, p. 353-354. ISBN 978-3-319-40611-4.

NOVOTNÝ, Vít. Sazba textu označkovaného v jazyce Markdown uvnitř TeXových dokumentů (Rendering Markdown inside TeX documents). Zpravodaj CSTUG. Brno: CSTUG, 2016, vol. 26, 1-4, p. 78-93. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2016-1-4/78.

RYGL, Jan, Petr SOJKA, Michal RŮŽIČKA and Radim ŘEHŮŘEK. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Tenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2016. Brno: Tribun EU, 2016, p. 79-87. ISBN 978-80-263-1095-2.

SOJKA, Petr, Aleš HORÁK, Ivan KOPEČEK and Karel PALA. Text, Speech and Dialogue: 19th International Conference TSD 2016, Brno, Czech Republic, September 12-16, 2016. Edited by Sojka P., Horák A., Kopeček I., Pala K. prvni. Berlin Heidelberg: Springer Verlag, 2016, 550 pp. ISBN 978-3-319-45509-9. Available from: https://dx.doi.org/10.1007/978-3-319-45510-5.

STOKLASA, Roman and Tomáš MAJTNER. Texture Analysis of 3D Fluorescence Microscopy Images Using RSurf 3D Features. Online. In International Symposium on Biomedical Imaging (ISBI'16). Los Alamitos, California: IEEE Computer Society, 2016, p. 1212-1216. ISBN 978-1-4799-2350-2. Available from: https://dx.doi.org/10.1109/ISBI.2016.7493484.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. The Aberrant DNA Methylation Profile of Human Induced Pluripotent Stem Cells Is Connected to the Reprogramming Process and Is Normalized During In Vitro Culture. PLOS ONE. Public Library of Science, 2016, vol. 11, No 6, p. nestránkováno, 16 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0157974.

KRATOCHVÍLOVÁ, Kateřina, Lukáš MORÁŇ, Stanislava PAĎOUROVÁ, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA, Aleš HAMPL, Irena KRONTORÁD KOUTNÁ and Petr VAŇHARA. The role of the endoplasmic reticulum stress in stemness, pluripotency and development. European Journal of Cell Biology. Jena: Elsevier GMBH, 2016, vol. 95, 3-5, p. 115-123. ISSN 0171-9335. Available from: https://dx.doi.org/10.1016/j.ejcb.2016.02.002.

HORÁK, Aleš, Karel PALA, Ivan KOPEČEK, Adam RAMBOUSEK, Pavel RYCHLÝ and Petr SOJKA. TSD 2016, 19th International Conference on Text, Speech and Dialogue. 2016.

KOLESÁR, Ivan, Jan BYŠKA, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. Online. In Stefan Bruckner and Bernhard Preim and Anna Vilanova and Helwig Hauser and Anja Hennemuth and Arvid Lundervold. EG VCBM 2016 Eurographics Workshop on Visual Computing for Biology and Medicine. Bergen: The Eurographics Association, 2016, p. nestránkováno, 10 pp. ISBN 978-3-03868-010-9. Available from: https://dx.doi.org/10.2312/vcbm.20161265.

LUKÁŠOVÁ, Helena. Uplatnění 3d modelování v sochařské praxi (3d modeling in sculpture practise). Uplatnění 3d modelování v sochařské praxi. Banska Bystrica, 2016, p. 24-37.

SVOBODA, David, Vladimír ULMAN, Peter KOVÁČ, Barbara ŠALINGOVÁ, Lenka TESAŘOVÁ, Irena KRONTORÁD KOUTNÁ and Petr MATULA. Vascular Network Formation in Silico Using the Extended Cellular Potts Model. In 2016 IEEE International Conference on Image Processing. Piscataway, NJ, USA: IEEE Signal Processing Society, 2016, p. 3180-3183. ISBN 978-1-4673-9961-6. Available from: https://dx.doi.org/10.1109/ICIP.2016.7532946.

ULMAN, Vladimír, David SVOBODA, Matti NYKTER, Michal KOZUBEK and Pekka RUUSUVUORI. Virtual cell imaging: A review on simulation methods employed in image cytometry. Cytometry Part A. John Wiley & Sons, 2016, 89A, No 12, p. 1057-1072. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.23031.

BEČEV, Ondřej, Petr SOJKA, Fotios LIAROKAPIS, Bojan KEROUŠ and Martin BAREŠ. Virtual Reality Assesment of Functional Neurological Symptoms. In Reading Emotions Symposium. 2016.

KRONE, Michael, Barbora KOZLÍKOVÁ, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Julius PARULEK, Hans-Christian HEGE and Ivan VIOLA. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum. The Eurographics Association and John Wiley & Sons Ltd., 2016, vol. 35, No 3, p. 527-551. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.12928.

RONOVSKÁ, Anna. Visual and Art Education at Universities of Technology. In Šobáňová Petra. Useful Symbiosis: Science, Technology, Art & Art Education. Olomouc: Univerzita Palackého v Olomouci, 2016, p. 377-394. ISBN 978-80-244-4853-4.

JUŘÍK, Vojtěch, Čeněk ŠAŠINKA, Kateřina ŠPRIŇAROVÁ, Lukáš HERMAN, Zbyněk ŠTĚRBA, Zdeněk STACHOŇ, Jiří CHMELÍK and Barbora KOZLÍKOVÁ. Vliv formy 3D zobrazení geografické informace na její kognitivní zpracování (Effect of 3D geovisualization on the cognitive processing of the information). Online. In Farkaš, Igor; Takáč, Martin; Rybár, Ján; Kelemen, Jozef. Kognicia a umelý život XV, 2015. Bratislava: Univerzita Komenského v Bratislave, 2016, p. 61-66. ISBN 978-80-223-3875-2.

SOCHOR, Jiří and Barbora KOZLÍKOVÁ. Výzkum alternativního řešení ovládacího panelu pro monitorovací systémy sítě pomocí infografiky (Optional Solution of Control Pannel for Network Visualization Monitor with Infographics). Brno: Invea/Flowmon Networks, a.s., 2016, 10 pp.

BALÁŽIA, Michal and Petr SOJKA. Walker-Independent Features for Gait Recognition from Motion Capture Data. In Antonio Robles-Kelly, Marco Loog, Battista Biggio, Francisco Escolano, Richard Wilson. Proceedings of the joint IAPR International Workshops on Structural and Syntactic Pattern Recognition (SSPR 2016) and Statistical Techniques in Pattern Recognition (SPR 2016). LNCS 10029. Switzerland: Springer International Publishing AG, 2016, p. 310-321. ISBN 978-3-319-49054-0. Available from: https://dx.doi.org/10.1007/978-3-319-49055-7_28.

SOJKA, Petr. XVI. Filmový festival Fakulty informatiky Masarykovy univerzity (FF FI MU) (XVI. Movie Festival of Faculty of Informatics, Masaryk University). 2016.

LUKÁŠOVÁ, Helena. Ateliér grafického designu + multimédií Fakulty informatiky Masarykovy univerzity : Studio of Graphic Design + Multimedia Faculty of Informatics Masaryk University. 1. vyd. Brno: Masarykova univerzita, 2015, 64 pp. ISBN 978-80-210-7691-4.

ŠKOLA, Filip, Szymon FIAŁEK and Fotis LIAROKAPIS. Augmenting the Rubber Hand Illusion. ERCIM News. ERCIM, 2015, vol. 2015, No 103, p. 25-26. ISSN 0926-4981.

STOKLASA, Roman, Lukáš BÁLEK, Pavel KREJČÍ and Petr MATULA. Automated Cell Segmentation in Phase-Contrast Images based on Classification and Region Growing. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging, 2015. Neuveden: Engineering in Medicine and Biology Society, 2015, p. 1447-1451. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7164149.

GALVÁNEK, Marek, Katarína FURMANOVÁ, Igor CHALÁS and Jiří SOCHOR. Automated facial landmark detection, comparison and visualization. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. Proceedings of the 31st Spring Conference on Computer Graphics. Bratislava, Slovakia: ACM, 2015, p. 7-14. ISBN 978-1-4503-3693-2. Available from: https://dx.doi.org/10.1145/2788539.2788540.

KRONTORÁD KOUTNÁ, Irena, Barbara ŠALINGOVÁ, Petr SYNEK and Lenka ZAJÍČKOVÁ. Biodistribution of non-coated gamma-Fe2O3 nanoparticles in stem cells (Creating life in 3D conference). In Creating life in 3D conference,Brno 2- 4.9.2015. 2015.

LÍŠKA, Martin. Building the Ultimate Math Search Engine. školitel diplomové práce. Brno: Masarykova univerzita, 2015, 79 pp.

STEJSKAL, Stanislav, Karel ŠTĚPKA, Lenka TESAŘOVÁ, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel ŠIMARA, Zbyněk ZDRÁHAL and Irena KRONTORÁD KOUTNÁ. Cell cycle-dependent changes in H3K56ac in human cells. Cell Cycle. Philadelphia: Taylor&Francis Inc, 2015, vol. 14, No 24, p. 3851-3863. ISSN 1538-4101. Available from: https://dx.doi.org/10.1080/15384101.2015.1106760.

MATULA, Pavel, Martin MAŠKA, Dmitry SOROKIN, Petr MATULA, Carlos ORTIZ-DE-SOLÓRZANO and Michal KOZUBEK. Cell tracking accuracy measurement based on comparison of acyclic oriented graphs. PLoS ONE. 2015, vol. 10, No 12, p. "e0144959", 19 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0144959.

CHALÁS, Igor, Ľuboš KOHÚT, Zuzana FERKOVÁ and Jiří SOCHOR. Cloud-computing based system for analysis of 3D facial data. In Abstract Book of the 7th European Academy of Forensic Science Conference. 2015.

LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies. In Davood Rafiei, Katsumi Tanaka. NWSearch '15: Proceedings of the First International Workshop on Novel Web Search Interfaces and Systems. New York, NY, USA: ACM, 2015, p. 7-9. ISBN 978-1-4503-3789-2. Available from: https://dx.doi.org/10.1145/2810355.2810359.

ČEJKA, Jan. Continuous Collision Detection Using Tetrahedral Structures. In Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications (VS-Games 2015). Skovde, Sweden: IEEE Computer Society, 2015, p. 175-178. ISBN 978-1-4799-8102-1. Available from: https://dx.doi.org/10.1109/VS-GAMES.2015.7295769.

LAMERAS, Petros, Thrasyvoulos TSIATSOS, Panagiotis PETRIDIS, Dimitris TOLIS, Fotis LIAROKAPIS, Despina ANASTASIADOU, Aristidis PROTOPSALTIS, Maurice HENDRIX and Sylvester ARNAB. Creative Thinking Experimentations for Entrepreneurship with A Disruptive, Personalised and Mobile Game-based Learning Ecosystem. Online. In Proc of the 9th Int'l Conference on Interactive Mobile and Communication Technologies and Learning 2015 (IMCL 2015), Special Session: Mobile Serious Games for Creativity, Cognition and Innovation in Education. Thessaloniki: IEEE Computer Society, 2015, p. 348-352. ISBN 978-1-4673-8243-4. Available from: https://dx.doi.org/10.1109/IMCTL.2015.7359617.

KRONTORÁD KOUTNÁ, Irena, Pavel ŠIMARA, Pavel MATULA, Lenka TESAŘOVÁ and Barbara ŠALINGOVÁ. Derivation of human induced pluripotent stem cells and Advanced Methods of Image Processing. In CEITEC PhD Retreat, 23-24.4.2015, Valtice Czech Republic. 2015.

LÍŠKA, Martin. Enhancing Mathematics Information Retrieval. In SIGIR '15: Proceedings of the 38th International ACM SIGIR Conference on Research and Development in Information Retrieval. ACM, 2015, 1 pp. ISBN 978-1-4503-3621-5. Available from: https://dx.doi.org/10.1145/2766462.2767843.

SYLAIOU, Stella, Katerina MANIA, Fotis LIAROKAPIS, Martin WHITE, Krzysztof WALCZAK, Rafal WOJCIECHOWSKI, Wojciech WIZA and Petros PATIAS. Evaluation of a Cultural Heritage Augmented Reality Game. In Cartographies of Mind, Soul and Knowledge, Special issue for Professor Emeritus Myron Myridis, of Rural and Surveying Engineers. Greece: AUTH, 2015, p. 153-174. ISBN 978-960-89320-7-4.

LIAROKAPIS, Fotis, Athanasios VOURVOPOULOS and Alina ENE. Examining User Experiences Through A Multimodal BCI Puzzle Game. In Proc. of the 19th International Conference on Information Visualisation (IV 2015). USA: IEEE Computer Society, 2015, p. 488-493. ISBN 978-1-4673-7568-9. Available from: https://dx.doi.org/10.1109/iV.2015.87.

RONOVSKÁ, Anna. FÍ! – kniha komiksů. Konceptuální + intermediální tvorba (2013–2015) Fakulty informatiky Masarykovy univerzity. 1. vyd. Brno: Masarykova univerzita, 2015, 136 pp. ISBN 978-80-210-7906-9.

BUCHTOVÁ, marcela, Veronika ORALOVÁ, Anie AKLIAN, Jan MAŠEK, Iva VESELA, Zhufeng OUYANG, Tereza OBADALOVÁ, Žaneta KONEČNÁ, Tereza SPOUSTOVÁ, Tereza POSPÍŠILOVÁ, Petr MATULA, Miroslav VAŘECHA, Lukáš BÁLEK, Iva GUDERNOVÁ, Iva JELÍNKOVÁ, Ivan DURAN, Iveta ČERVENKOVÁ, Shunichi MURAKAMI, Alois KOZUBÍK, Petr DVOŘÁK, Vítězslav BRYJA and Pavel KREJČÍ. Fibroblast growth factor and canonical WNT/beta-catenin signaling cooperate in suppression of chondrocyte differentiation in experimental models of FGFR signaling in cartilage. Biochimica et Biophysica Acta - Molecular Basis of Disease. Amsterdam: ELSEVIER SCIENCE BV, 2015, vol. 1852, No 5, p. 839-850. ISSN 0925-4439. Available from: https://dx.doi.org/10.1016/j.bbadis.2014.12.020.

CHALÁS, Igor, Petra URBANOVÁ, Mikoláš JURDA, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ and Jiří SOCHOR. FIDENTIS Analyst 1.3.2. 2015.

CRISTEA, Adrian and Fotis LIAROKAPIS. Fractal Nature - Generating Realistic Terrains for Games. In Proc. of the 7th International Conference on Games and Virtual Worlds for Serious Applications (VS-Games 2015). Skovde, Sweden: IEEE Computer Society, 2015, p. 84-91. ISBN 978-1-4799-8102-1. Available from: https://dx.doi.org/10.1109/VS-GAMES.2015.7295776.

CHALÁS, Igor, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Jiří SOCHOR and Barbora KOZLÍKOVÁ. Generation of variable human faces from 3D scan dataset. In In Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications. Skovde, Sweden: IEEE Computer Society, 2015, p. 38-45. ISBN 978-1-4799-8102-1. Available from: https://dx.doi.org/10.1109/VS-GAMES.2015.7295777.

KARAS, Pavel, Vincent MORARD, Jan BARTOVSKÝ, Thierry GRANDPIERRE, Eva DOKLÁDALOVÁ, Petr MATULA and Petr DOKLÁDAL. GPU Implementation of Linear Morphological Openings with Arbitrary Angle. Journal of Real-Time Image Processing. Springer-Verlag, 2015, vol. 10, No 1, p. 27-41. ISSN 1861-8200. Available from: https://dx.doi.org/10.1007/s11554-012-0248-7.

PETRIDIS, Panagiotis, Fotis LIAROKAPIS, Petros LAMERAS, Maurice HENDRIX, Ian DUNWELL, Anastasios BABAOUKAS, Elise SMITHSON and Mark GATERELL. Green@CU: An environmental Game for Residential Accommodation. Online. In Proc. of the 9th Int'l Conference on Interactive Mobile and Communication Technologies and Learning 2015 (IMCL 2015), Special Session: Mobile Serious Games for Creativity, Cognition and Innovation in Education. Thessaloniki: IEEE Computer Society, 2015, p. 269-273. ISBN 978-1-4673-8243-4. Available from: https://dx.doi.org/10.1109/IMCTL.2015.7359601.

TESAŘOVÁ, Lenka, Barbara ŠALINGOVÁ, Pavel ŠIMARA and Irena KRONTORÁD KOUTNÁ. Hematopoietic developmental potential is variable in pluripotent stem cell lines. In Conference Frontiers in Material and Life Sciences: Creating Life in 3D, 2-4 September, 2015, Brno. 2015.

URBANOVÁ, Petra, Igor CHALÁS and Barbora KOZLÍKOVÁ. How accurate is 3D facial morphology for personal identication? (How accurate is 3D facial morphologyfor personal identication?). In Proceedings of the 67th AnnualcScientic Meeting of the American Academy of Forensic Sciences. 2015.

ŠPRIŇAROVÁ, Kateřina, Vojtěch JUŘÍK, Čeněk ŠAŠINKA, Lukáš HERMAN, Zbyněk ŠTĚRBA, Zdeněk STACHOŇ, Jiří CHMELÍK and Barbora KOZLÍKOVÁ. Human-computer Interaction in Real 3D and Pseudo-3D Cartographic Visualization: A Comparative Study. In Claudia Robbi Sluter, Carla Bernadete Madureira Cruz, Paulo Márcio Leal de Menezes. Cartography - Maps Connecting the World: 27th International Cartographic Conference 2015 - ICC2015. 1st. ed. Švýcarsko: Springer International Publishing, 2015, p. 59-73. ISBN 978-3-319-17737-3. Available from: https://dx.doi.org/10.1007/978-3-319-17738-0_5.

ANGUIANO, María, Carlos CASTILLA, Martin MAŠKA, Cristina EDERRA, Javier FERNÁNDEZ-MARQUÉS, Rafael PELÁEZ, Ana ROUZAUT, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. Characterization of the Role of Collagen Network Structure and Composition in Cancer Cell Migration. Online. In 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Milano: IEEE, 2015, p. 8139-8142. ISBN 978-1-4244-9271-8. Available from: https://dx.doi.org/10.1109/EMBC.2015.7320283.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Radek OŠLEJŠEK, Zdenek EICHLER, Dalibor TOTH, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Václav RAČANSKÝ, Ivo NUTÁR and Dušan LAGO. KYPO - Kybernetický polygon (KYPO - Cybernetic Proving Ground). 2015.

EICHLER, Zdenek, Radek OŠLEJŠEK and Dalibor TOTH. KYPO: A Tool for Collaborative Study of Cyberattacks in Safe Cloud Environment. In HCI International 2015: Human Aspects of Information Security, Privacy, and Trust. LNCS, vol. 9190. Los Angeles: Springer International Publishing, 2015, p. 190-199. ISBN 978-3-319-20375-1. Available from: https://dx.doi.org/10.1007/978-3-319-20376-8_17.

SOROKIN, Dmitry, Lenka STIXOVÁ, Petra SEHNALOVÁ, Soňa LEGARTOVÁ, Jana SUCHÁNKOVÁ, Pavel ŠIMARA, Stanislav KOZUBEK, Pavel MATULA, Magdalena SKALNÍKOVÁ, Ivan RAŠKA and Eva BÁRTOVÁ. Localized movement and morphology of UBF1-positive nucleolar regions are changed by gamma-irradiation in G2 phase of the cell cycle. Nucleus. 2015, vol. 6, No 4, p. 301-313. ISSN 1949-1034. Available from: https://dx.doi.org/10.1080/19491034.2015.1075111.

SOJKA, Petr. member of Programme Committee of TSD 2015 conference. Programme Committee of The 18th International Conference on Text, Speech and Dialogue, 2015.

SOJKA, Petr. member of Steering Committee of CICM conference series. Steering Committee of CICM Conference 2017, 2015 - 2019.

BYŠKA, Jan, Adam JURČÍK, Eduard M. GRÖLLER, Ivan VIOLA and Barbora KOZLÍKOVÁ. MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Computer Graphics Forum. Wiley-Blackwell, 2015, vol. 34, No 3, p. 1-10. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.12612.

HUMPOLÍČEK, Pavel, Barbora KOZLÍKOVÁ and Jiří CHMELÍK. NEWRON – terapeutický software k volnému využití (NEWRON – therapeutic software for free use). In PsychoLogOn. Brno: Psychologický ústav Filozofické fakulty Masarykovy univerzity, 2015, p. 23-27. ISSN 1805-7160.

HUMPOLÍČEK, Pavel, Barbora KOZLÍKOVÁ and Jiří CHMELÍK. NEWRON – Therapeutic Software for Free usage. Annales psychologici. Brno: Masarykova univerzita, 2015, 2 (16), No 1, p. 20-27. ISSN 2336-4939.

SVOBODA, David. Next Step Toward the Automation of Screening for Cervical Cancer. Cytometry Part A. John Wiley & Sons, 2015, 87a, No 3, p. 195-196. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.22564.

SVOBODA, David, Vladimír ULMAN and Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, p. 712-716. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7163972.

BYŠKA, Jan, Ivana KOLINGEROVÁ, Barbora KOZLÍKOVÁ and Jiří SOCHOR. Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. 31st Proceedings of Spring Conference on Computer Graphics. Bratislava, Slovakia: ACM, 2015, p. 81-88. ISBN 978-1-4503-3693-2. Available from: https://dx.doi.org/10.1145/2788539.2788550.

O'CONNOR, Stuart, Fotis LIAROKAPIS and Jayne CHRISINA. Perceived Realism of Crowd Behaviour with Social Forces. In Proc. of the 19th International Conference on Information Visualisation (IV 2015). Barcelona, Spain: IEEE Computer Society, 2015, p. 494-499. ISBN 978-1-4673-7568-9. Available from: https://dx.doi.org/10.1109/iV.2015.88.

ŠTĚPKA, Karel, Pavel MATULA, Petr MATULA, Stefan WOERZ, Karl ROHR and Michal KOZUBEK. Performance and Sensitivity Evaluation of 3-D Spot Detection Methods in Confocal Microscopy. Cytometry Part A. John Wiley & Sons, 2015, 87A, No 8, p. 759-772. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.22692.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. Pluripotent stem cell lines display variable hematopoietic developmental potential. In 2015 EMBL Symposium: Frontiers in Stem Cells & Cancer, Heidelberg, Germany, Mar 29-31, 2015. 2015.

MAŠKA, Martin, Cristina EDERRA, Javier FERNÁNDEZ-MARQUÉS, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. Quantification of the 3D Collagen Network Geometry in Confocal Reflection Microscopy. Online. In 22nd IEEE International Conference on Image Processing. Québec City: IEEE, 2015, p. 1791-1794. ISBN 978-1-4799-8339-1. Available from: https://dx.doi.org/10.1109/ICIP.2015.7351109.

VINKLER, Marek and Vlastimil HAVRAN. Register Efficient Dynamic Memory Allocator for GPUs. Computer Graphics Forum. Wiley, 2015, vol. 34, No 8, p. 143-154. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.12666.

LUKÁŠOVÁ, Helena. Safe Place. Safe Place. 2015.

STEJSKAL, Stanislav, Bára SZAROWSKÁ, Lenka TESAŘOVÁ, Pavel ŠIMARA and Irena KRONTORÁD KOUTNÁ. Single-cell analysis of long-range interactions of POU5F1 foci in hESC cells. In EMBL konference: Frontiers in Stec Cells and Cancer. 2015.

OŠLEJŠEK, Radek, Zdenek EICHLER, Dalibor TOTH, Pavel ČELEDA, Jakub ČEGAN, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Martin VIZVÁRY and Jan VYKOPAL. Software pro vizualizaci virtuálního prostředí KYPO (Software for visualization of KYPO environment). 2015.

RAMBOUSEK, Adam, Vít BAISA, Vít SUCHOMEL, Aleš HORÁK and Lucia KOCINCOVÁ. Terminologický tezaurus pro obor zeměměřictví a katastru nemovitostí: Certifikovaná metodika (Terminological thesaurus for the field of surveying, mapping and cadastre: Certified Methodology). 2015.

NOVOTNÝ, Vít. The beamer theme for the typesetting of thesis defense presentations at the Masaryk University in Brno. 2015.

VOURVOPOULOS, Athanasios, Fotis LIAROKAPIS and Mon-Chu CHEN. The Effect of Prior Gaming Experience in Motor Imagery Training for Brain-Computer Interfaces: A Pilot Study. In Proc. of the 7th International Conference on Games and Virtual Worlds for Serious Applications (VS-Games 2015). Skovde, Sweden: IEEE Computer Society, 2015, p. 139-146. ISBN 978-1-4799-8102-1. Available from: https://dx.doi.org/10.1109/VS-GAMES.2015.7295789.

NOVOTNÝ, Vít. The fithesis3 class for the typesetting of theses written at the Masaryk University in Brno. 2015.

HÖLSCHER, Christina, Florian SONNTAG, Katharina HENRICH, Qingxin CHEN, Jürgen BENEKE, Petr MATULA, Karl ROHR, Lars KADERALI, Nina BEIL, Holger ERFLE, Jürgen A KLEINSCHMIDT and Müller MARTIN. The SUMOylation Pathway Restricts Gene Transduction by Adeno-Associated Viruses. PLoS Pathogens. Public Library of Science, 2015, vol. 11, No 12, p. e1005281. ISSN 1553-7366. Available from: https://dx.doi.org/10.1371/journal.ppat.1005281.

ORTIZ-DE-SOLÓRZANO, Carlos, Arrate MUÑOZ-BARRUTIA, Erik MEIJERING and Michal KOZUBEK. Toward a Morphodynamic Model of the Cell. IEEE Signal Processing Magazine. New York: IEEE, 2015, vol. 32, No 1, p. 20-29. ISSN 1053-5888. Available from: https://dx.doi.org/10.1109/MSP.2014.2358263.

ARNAB, Sylvester, Odafe IMIRUAYE, Fotis LIAROKAPIS, Gemma TOMBS, Petros LAMERAS, Angel LAGUNA and Pablo MORENO-GER. Towards Performance Prediction Using In-Game Measures. Online. In Proc. of Toward Justice: Culture, Language, and Heritage in Education Research and Praxis (AERA 2015). AERA, 2015.

ULMAN, Vladimír, Zoltán ORÉMUŠ and David SVOBODA. TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells. In Vittorio Murino, Enrico Puppo, Gianni Vernazza. Proceedings of 18th International Conference on Image Analysis and Processing. Heidelberg, Německo: Springer International Publishing, 2015, p. 623-634. ISBN 978-3-319-23230-0. Available from: https://dx.doi.org/10.1007/978-3-319-23231-7_56.

JURČÍK, Adam, Jan BYŠKA, Jiří SOCHOR and Barbora KOZLÍKOVÁ. Visibility-Based Approach to Surface Detection of Tunnels in Proteins. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. 31st Proceedings of Spring Conference on Computer Graphics. Bratislava, Slovakia: ACM, 2015, p. 65-72. ISBN 978-1-4503-3693-2. Available from: https://dx.doi.org/10.1145/2788539.2788548.

KOZLÍKOVÁ, Barbora, Michael KRONE, Norbert LINDOW, Martin FALK, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK and Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art. Online. In R. Borgo and F. Ganovelli and I. Viola. Eurographics Conference on Visualization (EuroVis) - STARs. Neuveden: The Eurographics Association, 2015, p. 61-81. ISBN 978-3-905674-99-6. Available from: https://dx.doi.org/10.2312/eurovisstar.20151112.

FURMANOVÁ, Katarína. Visualization Techniques for 3D Facial Comparison. In Hans-Jörg Schulz, Bodo Urban, Uwe Freiherr von Lukas. Proceedings of the International Summer School on Visual Computing 2015. Stuttgart: Fraunhofer Verlag, 2015, p. 23-33. ISBN 978-3-8396-0960-6.

KOZLÍKOVÁ, Barbora and Jiří SOCHOR. Vývoj nových léčiv v počítači (Designing new drugs in computer). Vesmír. Vesmír s.r.o., 2015, vol. 2015, No 9, p. 504-506. ISSN 0042-4544.

SOJKA, Petr. XV. Filmový festival Fakulty informatiky Masarykovy univerzity (XV. Movie Festival of Faculty of Informatics, Masaryk University). 2015.

MAJTNER, Tomáš and David SVOBODA. 2D/3D Gabor Features and 2D/3D MPEG-7 EHD Features. 2015.

MAŠKA, Martin, Vladimír ULMAN, David SVOBODA, Pavel MATULA, Petr MATULA, Cristina EDERRA, Ainhoa URBIOLA, Tomás ESPAÑA, Subramanian VENKATESAN, Deepak M W BALAK, Pavel KARAS, Tereza BOLCKOVÁ, Markéta ŠTREITOVÁ, Craig CARTHEL, Stefano CORALUPPI, Nathalie HARDER, Karl ROHR, Klas E G MAGNUSSON, Joakim JALDÉN, Helen M BLAU, Oleh DZYUBACHYK, Pavel KŘÍŽEK, Guy M HAGEN, David PASTOR-ESCUREDO, Daniel JIMENEZ-CARRETERO, Maria J LEDESMA-CARBAYO, Arrate MUÑOZ-BARRUTIA, Erik MEIJERING, Michal KOZUBEK and Carlos ORTIZ-DE-SOLORZANO. A Benchmark for Comparison of Cell Tracking Algorithms. Bioinformatics. 2014, vol. 30, No 11, p. 1609-1617. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btu080.

WILLIAMS, Ian, Nicholas BOWRING and David SVOBODA. A performance evaluation of statistical tests for edge detection in textured images. Computer Vision and Image Understanding. Elsevier, 2014, vol. 122, May 2014, p. 115-130. ISSN 1077-3142. Available from: https://dx.doi.org/10.1016/j.cviu.2014.02.009.

KOVÁČIK, Lubomír, Sami KEREÏCHE, Johanna HÖÖG, Pavel JŮDA, Pavel MATULA and Ivan RAŠKA. A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions. Journal of Structural Biology. Academic Press, 2014, vol. 186, No 1, p. 141-152. ISSN 1047-8477. Available from: https://dx.doi.org/10.1016/j.jsb.2014.02.004.

KOZLÍKOVÁ, Barbora. Aktuální stav v oblasti analýzy a vizualizace proteinových struktur (Current state in analysis and visualization of protein structures). In přednáška na Katedře informatiky a výpočetní techniky ZČU Plzeň. 2014.

PAKRAY, Partha and Petr SOJKA. An Architecture for Scientific Document Retrieval Using Textual and Math Entailment Modules. In Eighth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2014. Brno: Tribun EU, 2014, p. 107-117. ISSN 2336-4289. Available from: https://dx.doi.org/10.13140/2.1.4036.2561.

SEBERA, Martin and Renata KLÁROVÁ. Aplikovaná matematická statistika (Applied mathematical statistics). Online. Brno: Masarykova univerzita, 2014, p. nestránkováno, 51 pp. ISBN 978-80-210-7427-9.

SEBERA, Martin and Renata KLÁROVÁ. Applied mathematical statistics. Online. Brno: Masarykova univerzita, 2014, p. nestránkováno, 48 pp. ISBN 978-80-210-7428-6.

SEBERA, Martin. Biomechanická analýza pohybového výkonu III. 1. vyd. Brno: Masarykova univerzita, 2014, 151 pp. ISBN 978-80-210-6761-5.

EICHLER, Zdenek. Boulevard: Affective Adaptive User Interface. Online. In Juan C. Augusto, Tongzhen Zhang. Volume 18: Workshop Proceedings of the 10th International Conference on Intelligent Environments. Amsterdam: IOS Press, 2014, p. 74-79. ISBN 978-1-61499-411-4. Available from: https://dx.doi.org/10.3233/978-1-61499-411-4-74.

VINKLER, Marek, Vlastimil HAVRAN and Jiří BITTNER. Bounding Volume Hierarchies versus Kd-trees on Contemporary Many-Core Architectures. In Diego Gutierrez, Roman Ďurikovič. Proceedings of the 30th Spring Conference on Computer Graphics. Bratislava, Slovakia: Comenius University, Bratislava, 2014, p. 61-68. ISBN 978-1-4503-3070-1. Available from: https://dx.doi.org/10.1145/2643188.2643196.

KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MAŇÁK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ and Jiří SOCHOR. Caver Analyst 1.0. 2014.

KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MANAK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ and Jiří SOCHOR. CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics. Oxford University Press, 2014, vol. 30, No 18, p. 2684-2685. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btu364.

JIRSÍK, Tomáš, Martin HUSÁK, Pavel ČELEDA and Zdenek EICHLER. Cloud-based Security Research Testbed: A DDoS Use Case. In Hanan Lutfiyya and Piotr Cholda. Proceedings of the Network Operations and Management Symposium (NOMS 2014). Krakow, Poland: IEEE Xplore Digital Library, 2014, p. 1-2. ISBN 978-1-4799-0912-4. Available from: https://dx.doi.org/10.1109/NOMS.2014.6838272.

BÁRTOVÁ, Eva, Veronika FOLTÁNKOVÁ, Soňa LEGARTOVÁ, Petra SEHNALOVÁ, Dmitry SOROKIN, Jana SUCHÁNKOVÁ and Stanislav KOZUBEK. Coilin is rapidly recruited to UVA-induced DNA lesions and gamma-radiation affects localized movement of Cajal bodies. Nucleus. Landes Bioscience, 2014, vol. 5, No 3, p. 269-277. ISSN 1949-1034. Available from: https://dx.doi.org/10.4161/nucl.29229.

LIAROKAPIS, Fotis, Kurt DEBATTISTA, Athanasios VOURVOPOULOS, Panagiotis PETRIDIS and Alina ENE. Comparing interaction techniques for serious games through brain-computer interfaces: A user perception evaluation study. Entertainment Computing. Elsevier, 2014, vol. 5, No 4, p. 391-399. ISSN 1875-9521. Available from: https://dx.doi.org/10.1016/j.entcom.2014.10.004.

MAJTNER, Tomáš and David SVOBODA. Comparison of 3D Texture-based Image Descriptors in Fluorescence Microscopy. In Reneta P. Barneva, Valentin E. Brimkov, Josef Šlapal. 16th International Workshop on Combinatorial Image Analysis (IWCIA) 2014. Switzerland: Springer International Publishing, 2014, p. 186-195. ISBN 978-3-319-07147-3. Available from: https://dx.doi.org/10.1007/978-3-319-07148-0_17.

PITNER, Tomáš, Renate MOTSCHNIG, Barbora KOZLÍKOVÁ, Jaroslav ŠKRABÁLEK, Lucie PEKÁRKOVÁ, Jiří KOLÁŘ, Martin NOVÁK, Nino TOMASCHEK, Edith HAMMER, David HASELBERGER, Christina BÖHM and Bernhard STANDL. Constructive Communication in International Teams: An Experience-Based Guide. 1st ed. Münster: WAXMANN Verlag GmbH, 2014, 248 pp. ISBN 978-3-8309-3025-9.

SEBERA, Martin, Renata KLÁROVÁ and Jiří ZHÁNĚL. Časové řady (Time series). 1. vyd. Brno: Masarykova univerzita, 2014, 53 pp. ISBN 978-80-210-6698-4.

SEBERA, Martin, Renata KLÁROVÁ and Jiří ZHÁNĚL. Časové řady - skripta v PDF ke stažení (Time series - University textbook [PDF]). Brno: Masarykova univerzita, Fakulta sportovních studií, 2014, 54 pp. ISBN 978-80-210-6826-1.

MUSIL, Radek, Pavel KORVAS, Martin SEBERA and Vladimír HELLEBRANDT. Časové srovnání vybraných fází kroku v průběhu přirozené chůze u dospělých žen (Time comparison of selected phase step during natural walking in adult women). In Mgr. Martin Sebera, Ph.D. Biomechanická analýza pohybového výkonu III. Brno: Masarykova univerzita, 2014, p. 74-89. ISBN 978-80-210-6761-5. Available from: https://dx.doi.org/10.5817/CZ.MUNI.210-6762-2014.

MALÍKOVÁ, Jana. Definice a smysl grafického designu (The definition and meaning of Graphic Design). In PV123: Základy vizuální komunikace na FI MU v Brně. 2014.

STRNAD, Ondřej, Barbora KOZLÍKOVÁ and Jiří SOCHOR. Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. In Julio Saez-Rodriguez. Advances in Intelligent Systems and Computing. Switzerland: Springer International Publishing, 2014, p. 73-80. ISBN 978-3-319-07580-8. Available from: https://dx.doi.org/10.1007/978-3-319-07581-5_9.

HAMŘÍK, Pavel, Ivan KOPEČEK, Radek OŠLEJŠEK and Jaromír PLHÁK. Dialogue-based Information Retrieval from Images. In Computers Helping People with Special Needs:14th International Conference, ICCHP 2014. LNCS, vol. 8547. Switzerland: Springer International Publishing, 2014, p. 85-92. ISBN 978-3-319-08595-1. Available from: https://dx.doi.org/10.1007/978-3-319-08596-8_13.

SOJKA, Petr. Digitization Workflow in the Czech Digital Mathematics Library. In Ruyong Feng, Wen-shin Lee, Yosuke Sato. Computer Mathematics. Berlin, Heidelberg: Springer Berlin Heidelberg, 2014, p. 147-156. ISBN 978-3-662-43798-8. Available from: https://dx.doi.org/10.1007/978-3-662-43799-5_13.

TOTH, Dalibor and Jaroslav RÁČEK. Dynamic Network Analysis Architecture for Heterogenenous Unstructured Text Data. In MINISTR, J. and TVRDIKOVA, M. Proceedings of the 17th International Conference on Information Technology for Practice 2014. Frýdek-Místek: Ostrava: VŠB - Technical University of Ostrava, Faculty of Economics, 2014, p. 263-270. ISBN 978-80-248-3555-6.

MANCINI, Maurizio, Andrei ERMILOV, Ginevra CASTELLANO, Fotis LIAROKAPIS, Giovanna VARNI and Christopher PETERS. Effects of gender mapping on perception of emotion from upper body movement in virtual characters. Online. In Shumaker, R. Lackey, S. Proc. of the 6th International Conference, VAMR 2014 Held as Part of HCI International 2014, Parallel Session - Interactive Technologies for Virtual and Augmented Reality. Part I, LNCS 8525. UK: Springer Verlag, 2014, p. 263-273. ISBN 978-3-319-07457-3. Available from: https://dx.doi.org/10.1007/978-3-319-07458-0_25.

STOKLASA, Roman, Tomáš MAJTNER and David SVOBODA. Efficient k-NN based HEp-2 cells classifier. PATTERN RECOGNITION. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2014, vol. 47, No 7, p. 2409-2418. ISSN 0031-3203. Available from: https://dx.doi.org/10.1016/j.patcog.2013.09.021.

VOURVOPOULOS, Athanasios and Fotis LIAROKAPIS. Evaluation of commercial brain-computer interfaces in real and virtual world environment: A pilot study. Computers and Electrical Engineering. England: Elsevier, 2014, 40/2014, No 2, p. 714-729. ISSN 0045-7906. Available from: https://dx.doi.org/10.1016/j.compeleceng.2013.10.009.

VÍT, Michal, Jindřiška KOHOUTKOVÁ, Martin BUGALA and Martin SEBERA. Evaluation of stress conditions in self-defence scenario training. In 3rd World Scientific Congress of Combat Sports and Martial Arts. 2014. ISBN 978-83-7996-052-1.