Publication Records

KANDRA, Mário, Tereza VÁŇOVÁ, Vincent Alexander JONGEN, Jakub POSPÍŠIL, Josef NOVAK, Václav CHOCHOLA, Tomas BURYSKA, Zbyněk PROKOP, Zdenek HODNY, Aleš HAMPL, Dáša BOHAČIAKOVÁ and Josef JAROŠ. A closed 3D printed microfluidic device for automated growth and differentiation of cerebral organoids from single-cell suspension. Biotechnology Journal. WEINHEIM: WILEY-V C H VERLAG GMBH, 2024, vol. 19, No 8, p. 1-17. ISSN 1860-6768. Available from: https://dx.doi.org/10.1002/biot.202400240.

HRUSKA-PLOCHAN, Marian, Vera I WIERSMA, Katharina M BETZ, Izaskun MALLONA, Silvia RONCHI, Zuzanna MANIECKA, Eva-Maria HOCK, Elena TANTARDINI, Florent LAFERRIERE, Sonu SAHADEVAN, Vanessa HOOP, Igor DELVENDAHL, Manuela PEREZ-BERLANGA, Beatrice GATTA, Martina PANATTA, van der Bourg ALEXANDER, Dáša BOHAČIAKOVÁ, Puneet SHARMA, De Vos LAURA, Karl FRONTZEK, Adriano AGUZZI, Tammaryn LASHLEY, Mark D ROBINSON, Theofanis KARAYANNIS, Martin MUELLER, Andreas HIERLEMANN and Magdalini POLYMENIDOU. A model of human neural networks reveals NPTX2 pathology in ALS and FTLD. Nature. BERLIN: NATURE PORTFOLIO, 2024, vol. 626, No 8001, p. 1-45. ISSN 0028-0836. Available from: https://dx.doi.org/10.1038/s41586-024-07042-7.

HO, Kim Hoa, Marleen TRAPP, Catello GUIDA, Ekaterina L IVANOVA, De Jaime-Soguero ANCHEL, Ammar JABALI, Christian THOMAS, Alena SALASOVA, Ondřej BERNATÍK, Chiara SALIO, Sandra HORSCHITZ, Martin HASSELBLATT, Marco SASSOE-POGNETTO, Lukáš ČAJÁNEK, Hiroshi ISHIKAWA, Horst SCHROTEN, Christian SCHWERK, Sergio P ACEBRON, Peter ANGEL, Philipp KOCH and Annarita PATRIZI. Activation of Wnt/β-catenin signaling is critical for the tumorigenesis of choroid plexus. Neuro-Oncology. Cary: Oxford University Press, 2024, 17 pp. ISSN 1522-8517. Available from: https://dx.doi.org/10.1093/neuonc/noae176.

SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Jakub ČILLÍK, Miriama JÁNOŠOVÁ, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In Elixir All-Hands 2024. 2024. Available from: https://dx.doi.org/10.7490/f1000research.1119872.1.

GREŠOVÁ, Katarína, Pavlína ŠPRINGEROVÁ, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In ECCB2024. 2024.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, vol. 52, July 5, p. W182-W186, 5 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkae397.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Cells, biomaterials, infrastructure; and the value of the data. In 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. 2024. ISBN 978-80-280-0587-0.

DE LA BOURDONNAYE, Gabin, Tereza GHAZALOVÁ, Petr FOJTÍK, Katerina KUTALKOVA, David BEDNÁŘ, Jiří DAMBORSKÝ, Vladimír ROTREKL, Veronika STEPANKOVA and Radka CHALOUPKOVÁ. Computer-aided engineering of stabilized fibroblast growth factor 21. Computational and Structural Biotechnology Journal. Elsevier, 2024, vol. 23, December 2024, p. 942-951. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2024.02.001.

KUBÍČKOVÁ, Barbara, Šárka MARTINKOVÁ, Dáša BOHAČIAKOVÁ and Klára HILSCHEROVÁ. Cyanobacterial anatoxin-a does not induce in vitro developmental neurotoxicity, but changes gene expression patterns in co-exposure with all-trans retinoic acid. Toxicology Letters. CLARE: Elsevier, 2024, vol. 391, January 2024, p. 39-44. ISSN 0378-4274. Available from: https://dx.doi.org/10.1016/j.toxlet.2023.12.004.

KADÁKOVÁ, Soňa, Jan RAŠKA, Hana HŘÍBKOVÁ, Veronika FEDOROVÁ, Jiří SEDMÍK, Klára PLEŠINGROVÁ, Kateřina SHEARDOVÁ and Dáša BOHAČIAKOVÁ. Generation of the Human iPSC Line from Spontaneous Late-Onset Alzheimer's Disease Patient with ApoE3/3 Genotype and Sex-, Age-, and ApoE-Matched Healthy Control. Stem cell research. Amsterdam: Elsevier, 2024, vol. 74, February 2024, p. 1-4. ISSN 1873-5061. Available from: https://dx.doi.org/10.1016/j.scr.2023.103273.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. GraSR: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.br8aq-db495.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-10: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.t45hr-bcw17.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-30: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.kgb8j-r5f84.

SIMCIKOVA, Daniela, Dominik GARDAS, Tomas PELIKAN, Lukáš MORÁŇ, Martin HRUDA, Katerina HLOZKOVA, Tiziana PIVETTA, Michal HENDRYCH, Julia STARKOVA, Lukas ROB, Petr VAŇHARA and Petr HENEBERG. Metabolism of primary high-grade serous ovarian carcinoma (HGSOC) cells under limited glutamine or glucose availability. CANCER & METABOLISM. LONDON: BMC, 2024, vol. 12, No 1, p. 1-19. ISSN 2049-3002. Available from: https://dx.doi.org/10.1186/s40170-024-00355-1.

LIŠČÁKOVÁ, Barbora, Andrijana ANGELOVSKI, Olga ŠVECOVÁ, Hana HŘÍBKOVÁ, Jiří SEDMÍK, Dáša BOHAČIAKOVÁ, Petr KLIMEŠ, Martina KOLAJOVÁ, Milan BRÁZDIL and Markéta BÉBAROVÁ. Neurodegenerácia a elektrická aktivita: analýza metódou multielectrode array (Neurodegeneration and electrical activity: analysis using multielectrode array technique). In 99. Fyziologické dny. 2024.

ANGELOVSKI, Andrijana, Barbora LIŠČÁKOVÁ, Olga ŠVECOVÁ, Hana HŘÍBKOVÁ, Jiří SEDMÍK, Dáša BOHAČIAKOVÁ, Petr KLIMEŠ, Martina KOLAJOVÁ, Milan BRÁZDIL and Markéta BÉBAROVÁ. Neurodegeneration and hyperexcitability of the brain tissue. In IUPS Beacon Meeting 2024. 2024.

ZUGEC, Maja, Borut FURLANI, Maria J CASTANON, Bostjan RITUPER, Irmgard FISCHER, Giuseppe BROGGI, Rosario CALTABIANO, Giuseppe M V BARBAGALLO, Di Rosa MICHELINO, Daniele TIBULLO, Rosalba PARENTI, Nunzio VICARIO, Sasa SIMCIC, Victorio Martin POZO DEVOTO, Gorazd B STOKIN, Gerhard WICHE, Jernej JORGACEVSKI, Robert ZOREC and Maja POTOKAR. Plectin plays a role in the migration and volume regulation of astrocytes: a potential biomarker of glioblastoma. Journal of Biomedical Science. LONDON: BMC, 2024, vol. 31, No 1, p. 1-22. ISSN 1021-7770. Available from: https://dx.doi.org/10.1186/s12929-024-01002-z.

HENDRYCH, Michal, Martin BARÁK, Hana VALEKOVÁ, Tomáš KAZDA, Petr POSPÍŠIL, Radek LAKOMÝ, Jiří ŠÁNA, Radim JANČÁLEK and Markéta HERMANOVÁ. Přehled difuzních gliomů dle klasifikace WHO 2021, 2. část - difuzní gliomy dětského typu (Diffuse glioma overview based on the 2021 WHO classifi cation part 2 - pediatric type). Česká a slovenská neurologie a neurochirurgie. Praha: Česká lékařská společnost J. E. Purkyně, 2024, vol. 87, No 1, p. 9-17. ISSN 1210-7859. Available from: https://dx.doi.org/10.48095/cccsnn20249.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jozef ČERŇANSKÝ, Jaroslav OĽHA, Matej ANTOL and Vlastislav DOHNAL. Scaling Learned Metric Index to 100M Datasets. In Edgar Chávez, Benjamin Kimia, Jakub Lokoč, Marco Patella, Jan Sedmidubsky. 17th International Conference on Similarity Search and Applications (SISAP 2024). Cham: Springer, 2024, p. 266-273. ISBN 978-3-031-75822-5. Available from: https://dx.doi.org/10.1007/978-3-031-75823-2_22.

HOFERKOVÁ, Eva, Václav ŠEDA, Soňa CESNÁRIKOVÁ, Jan VERNER, Tomáš LOJA, Květoslava MATULOVÁ, Hana SKUHROVÁ FRANCOVÁ, Eva ONDROUŠKOVÁ, Daniel FILIP, Nicolas BLAVET, Miroslav BOUDNÝ, Gabriela MLADONICKÁ PAVLASOVÁ, Josef VEČEŘA, Laura ONDRIŠOVÁ, Petra PAVELKOVÁ, Kryštof HLAVÁČ, Lenka KOŠŤÁLOVÁ, Androniki MICHAELOU, Šárka POSPÍŠILOVÁ, Jana DORAZILOVÁ, Václav CHOCHOLA, Josef JAROŠ, Michael DOUBEK, Marie JAROŠOVÁ, Aleš HAMPL, Lucy VOJTOVÁ, Leoš KŘEN, Jiří MAYER and Marek MRÁZ. Stromal cells engineered to express T cell factors induce robust CLL cell proliferation in vitro and in PDX co-transplantations allowing the identification of RAF inhibitors as anti-proliferative drug. Leukemia. LONDON: SPRINGERNATURE, 2024, vol. 38, No 8, p. 1-13. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/s41375-024-02284-w.

ANGELOVSKI, Andrijana, Barbora LIŠČÁKOVÁ, Olga ŠVECOVÁ, Hana HŘÍBKOVÁ, Jiří SEDMÍK, Dáša BOHAČIAKOVÁ, Petr KLIMEŠ, Martina KOLAJOVÁ, Milan BRÁZDIL and Markéta BÉBAROVÁ. The impact of neurodegeneration on the electrical activity of brain tissue: multielectrode array analysis. In FENS Forum 2024. 2024.

KADÁKOVÁ, Soňa, Jiří SEDMÍK, Petr FOJTÍK, Kateřina AMRUZ ČERNÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. UNCOVERING MECHANISMS OF ALZHEIMER’S DISEASE DEVELOPMENT THROUGH IPSC- DERIVED CEREBRAL ORGANOIDS. In XXIII. Interdisciplinary meeting of young scientists. 2024.

CESNÁRIKOVÁ, Soňa, Jiří SEDMÍK, Petr FOJTÍK, Kateřina AMRUZ ČERNÁ, Veronika POSPÍŠILOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. Unraveling Alzheimer's Disease Mechanisms Using 3D Cerebral Organoids Derived from Induced Pluripotent Stem Cells. In Morphology 2024, Telč. 2024.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface. JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A. Hoboken: WILEY, 2024, p. 1-16. ISSN 1549-3296. Available from: https://dx.doi.org/10.1002/jbm.a.37824.

LIŠČÁKOVÁ, Barbora, Andrijana ANGELOVSKI, Olga ŠVECOVÁ, Hana HŘÍBKOVÁ, Jiří SEDMÍK, Dáša BOHAČIAKOVÁ, Petr KLIMEŠ, Martina KOLAJOVÁ, Milan BRÁZDIL and Markéta BÉBAROVÁ. Využití metody multielectrode array pro studium dopadu neurodegenerace na elektrickou aktivitu cerebrálních organoidů (Use of the multielectrode array technique for the study of the impact of neurodegeneration on the electrical activity of cerebral organoids). In Setkání brněnských bioelektroniků. 2024.

HUTEČKOVÁ, Barbora, Jan KŘIVÁNEK, Zuzana SUMBALOVÁ KOLEDOVÁ, Zuzana HOLUBCOVÁ, Matea BREZAK, Ivana AĆIMOVIĆ, Türkan PORTAKAL, Jana DUMKOVÁ, Lukáš MORÁŇ, Aleš HAMPL, Yelyzaveta MAKIEIEVA, Tereza VÁŇOVÁ, Dáša BOHAČIAKOVÁ, Václav CHOCHOLA, Josef JAROŠ, Katarína ČIMBOROVÁ, Irena KOUTNÁ, Michaela BOSÁKOVÁ, Tomáš BÁRTA, Vítězslav HAVLÍČEK, Soňa KLOUDOVÁ, Vincent Alexander JONGEN, Jarmila HERŮDKOVÁ, Marcos GONZÁLEZ LÓPEZ, Leoš BENÁK, Maryam AZAM, Haneen Riadh Ali TUAIMA, Margarita GORBULINA, Josef LAVICKÝ, Marina ŠTRUNCOVÁ, Erika MIKULENKOVÁ, Riza Can CAKMAKCI, Petr VAŇHARA, Vendula PELKOVÁ, Victorio Martin POZO DEVOTO, Hana KOTASOVÁ, Michaela KAVKOVÁ, Petr TAUŠ, David VYSLOUŽIL, Canan ÇELIKER, Kateřina AMRUZ ČERNÁ, Naděžda VAŠKOVICOVÁ, Tereza SOURALOVÁ, Volodymyr POROKH, Drahomíra KYJOVSKÁ, Daniela KROČIANOVÁ, Michaela CAPANDOVÁ, Veronika SEDLÁKOVÁ, Veronika FEDOROVÁ, Jan RAŠKA, Miriam SATKOVÁ, Petr FOJTÍK, Klára PLEŠINGROVÁ, Soňa CESNÁRIKOVÁ, Jiří SEDMÍK, Hana HŘÍBKOVÁ, Marko MEĆAVA, Adam HARMANEC, Veronika POSPÍŠILOVÁ, Tami BOČKOVÁ, Veronika BOSÁKOVÁ, Adam BOGDANOVIČ, Zbyněk ZDRÁHAL, Vladislav RAKULTSEV, Marcela BUCHTOVÁ, Simona BÁRTOVÁ and Petr GINTAR. 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. Edition: 1., electronic. Brno: Masarykova Univerzita, 2024, 18 pp. ISBN 978-80-280-0587-0.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3D-af-Surfer: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.tbws0-hj147.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3DZD: Protein structural embeddings of AlphaFold DB v4. 2024. Available from: https://dx.doi.org/10.48700/datst.t45hr-bcw17.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3DZD: Protein structural embeddings of ESM Atlas. 2024. Available from: https://dx.doi.org/10.48700/datst.cd6zk-k0v44.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Dáša BOHAČIAKOVÁ, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Matej ANTOL and Aleš HAMPL. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In The Annual PhD Conference in Biomedical Sciences. 2023.

VÁŇOVÁ, Tereza, Jiří SEDMÍK, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Petr TAUŠ, Veronika POSPÍŠILOVÁ, Markéta NEZVEDOVÁ, Veronika FEDOROVÁ, Soňa KADÁKOVÁ, Hana KLÍMOVÁ, Michaela CAPANDOVÁ, Petra ORVISKÁ, Petr FOJTÍK, Simona BÁRTOVÁ, Karla PLEVOVÁ, Zdeněk SPÁČIL, Hana HŘÍBKOVÁ and Dáša BOHAČIAKOVÁ. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development. CELL REPORTS. CAMBRIDGE: CELL PRESS, 2023, vol. 42, No 11, p. 1-27. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2023.113310.

HOFERKOVÁ, Eva, Soňa KADÁKOVÁ, Václav ŠEDA, Jan VERNER, Miroslav BOUDNÝ, Gabriela MLADONICKÁ PAVLASOVÁ, Tomáš LOJA, Daniel FILIP, Josef VEČEŘA, Květoslava MATULOVÁ, Hana SKUHROVÁ FRANCOVÁ, Sonali SHARMA, Laura ONDRIŠOVÁ, Veronika PALUŠOVÁ, Lucy VOJTOVÁ, Leoš KŘEN, Michael DOUBEK and Marek MRÁZ. Coculture model with CD40L, IL4 and IL21 for study chronic lymphocytic leukemia proliferation. In CEITEC PhD Conference 2023, Brno. 2023.

NEMERGUT, Michal, Sérgio Manuel MARQUES, Lukáš UHRÍK, Tereza VÁŇOVÁ, Markéta NEZVEDOVÁ, Darshak Chandulal GADARA, Durga JHA, Jan TULIS, Veronika NOVÁKOVÁ, Joan PLANAS IGLESIAS, Antonín KUNKA, Anthony Thomas P LEGRAND, Hana HŘÍBKOVÁ, Veronika POSPÍŠILOVÁ, Jiří SEDMÍK, Jan RAŠKA, Zbyněk PROKOP, Jiří DAMBORSKÝ, Dáša BOHAČIAKOVÁ, Zdeněk SPÁČIL, Lenka HERNYCHOVÁ, David BEDNÁŘ and Martin MAREK. Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer’s Disease drug candidate. Molecular Neurodegeneration. England: BMC, 2023, vol. 18, No 1, p. 1-25. ISSN 1750-1326. Available from: https://dx.doi.org/10.1186/s13024-023-00620-9.

KUBÍČKOVÁ, Barbara, Šárka MARTINKOVÁ, Dáša BOHAČIAKOVÁ, Markéta NEZVEDOVÁ, Runze LIU, Ondřej BRÓZMAN, Zdeněk SPÁČIL and Klára HILSCHEROVÁ. Effects of all-trans and 9-cis retinoic acid on differentiating human neural stem cells in vitro. Toxicology. Clare: ELSEVIER IRELAND LTD, 2023, vol. 487, March 2023, p. 1-15. ISSN 0300-483X. Available from: https://dx.doi.org/10.1016/j.tox.2023.153461.

FEDOROVÁ, Veronika, Veronika POSPÍŠILOVÁ, Tereza VÁŇOVÁ, Kateřina AMRUZ ČERNÁ, Pavel ABAFFY, Jiří SEDMÍK, Jan RAŠKA, Simona VOCHYÁNOVÁ, Zuzana MATŮŠOVÁ, Jana HOUSEROVÁ, Lukáš VALIHRACH, Zdeněk HODNÝ and Dáša BOHAČIAKOVÁ. Glioblastoma and cerebral organoids: development and analysis of an in vitro model for glioblastoma migration. MOLECULAR ONCOLOGY. ENGLAND: WILEY, 2023, vol. 17, No 4, p. 647-663. ISSN 1574-7891. Available from: https://dx.doi.org/10.1002/1878-0261.13389.

ÇELIKER, Canan, Kamila WEISSOVÁ, Kateřina AMRUZ ČERNÁ, Jan OPPELT, Birthe DORGAU, Francisco MOLINA GAMBIN, Jana ŠEBESTÍKOVÁ, Majlinda LAKO, Evelyne SERNAGOR, Petra LISKOVA and Tomáš BÁRTA. Light-responsive microRNA molecules in human retinal organoids are differentially regulated by distinct wavelengths of light. iSCIENCE. CAMBRIDGE: CELL PRESS, 2023, vol. 26, No 7, p. 1-20. ISSN 2589-0042. Available from: https://dx.doi.org/10.1016/j.isci.2023.107237.

FEDOROVÁ, Veronika, Kateřina AMRUZ ČERNÁ, Jan OPPELT, Veronika POSPÍŠILOVÁ, Tomáš BÁRTA, Marek MRÁZ and Dáša BOHAČIAKOVÁ. MicroRNA Profiling of Self-Renewing Human Neural Stem Cells Reveals Novel Sets of Differentially Expressed microRNAs During Neural Differentiation In Vitro. Stem Cell Reviews and Reports. NEW YORK: SPRINGER, 2023, vol. 19, No 5, p. 1524-1539. ISSN 2629-3269. Available from: https://dx.doi.org/10.1007/s12015-023-10524-2.

NOVÁK, Jan, Martin HOŘÁK, Jana FIALOVÁ KUČEROVÁ, Jan KUČERA, Šárka JELÍNKOVÁ, Daniela KURUCZOVÁ, Vladimír ROTREKL, Jan KREJČÍ, Stjepan ULDRIJAN, Petr FOJTÍK, Barbora VALČÍKOVÁ, Marie TOMANDLOVÁ, Josef TOMANDL, Filip ZLÁMAL and Julie DOBROVOLNÁ. Plazmatické hladiny FSTL1 a FSLT5 predikují obnovu funkce levé komory u pacientů s nově zjištěnou dilatační kardiomyopatií (FSTL1/5 Plasmatic Levels Predict Left Ventricular Function Recovery in Recent-Onset Dilated Cardiomyopathy Patients). In 50. pracovní konference „Komise experimentální kardiologie“. 2023. ISBN 978-80-11-03840-3.

KADÁKOVÁ, Soňa, Jiří SEDMÍK, Petr FOJTÍK, Kateřina AMRUZ ČERNÁ, Veronika POSPÍŠILOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. Revealing Alzheimer's Disease Development Mechanisms via iPSC-Derived Cerebral Organoids. In BIOCEV Regeneration III. - Symposium for young scientists. 2023.

NEZVEDOVÁ, Markéta, Durga JHA, Tereza VÁŇOVÁ, Darshak Chandulal GADARA, Hana KLÍMOVÁ, Jan RAŠKA, Lukáš OPÁLKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Single Cerebral Organoid Mass Spectrometry of Cell-Specific Protein and Glycosphingolipid Traits. Analytical Chemistry. American Chemical Society, 2023, vol. 95, No 6, p. 3160-3167. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.2c00981.

KADÁKOVÁ, Soňa, Tereza VÁŇOVÁ, Jiří SEDMÍK, Petr FOJTÍK and Dáša BOHAČIAKOVÁ. Studying mechanisms of Alzheimer’s disease development using cerebral organoids. In XXII. Interdisciplinary meeting of young scientists, Milovy. 2023.

ONDRIŠOVÁ, Laura, Václav ŠEDA, Eva HOFERKOVÁ, Lenka KOŠŤÁLOVÁ, Kryštof HLAVÁČ, Gabriela MLADONICKÁ PAVLASOVÁ, Jan OPPELT, Pedro FARIA ZENI, Daniel FILIP, Michael DOUBEK, Kateřina AMRUZ ČERNÁ, Jiří MAYER and Marek MRÁZ. Adaptace buněk chronické lymfocytární leukémie na cílenou léčbu BCR inhibitory. In XXV. Biologické dny, Brno. 2022.

HAJJI, Khadija, Jiří SEDMÍK, Anna CHERIAN, Damiano AMORUSO, Liam KEEGAN and Mary Anne O'CONNELL. ADAR2 enzymes: efficient site-specific RNA editors with gene therapy aspirations. RNA. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 2022, vol. 28, No 10, p. 1281-1297. ISSN 1355-8382. Available from: https://dx.doi.org/10.1261/rna.079266.122.

SEDMÍK, Jiří, Tereza VÁŇOVÁ, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Veronika POSPÍŠILOVÁ, Veronika FEDOROVÁ, Petr FOJTÍK, Simona VOCHYÁNOVÁ, Hana KLÍMOVÁ, Klára PLEŠINGROVÁ, Petr TAUŠ, Karla PLEVOVÁ, Markéta NEZVEDOVÁ, Zdeněk SPÁČIL, Michaela CAPANDOVÁ, Petra ORVISKÁ, Z. BENEŠOVÁ, P. ABAFY, L. VALIHRACH and Jana HOUSEROVÁ. Cerebral organoids in disease modeling. In PhD retreat 2022, Telč. 2022.

YAWER, Affiefa, Eliška SYCHROVÁ, Jan RAŠKA, Pavel BABICA and Iva SOVADINOVÁ. Endocrine-disrupting chemicals affect Sertoli TM4 cell functionality through dysregulation of gap junctional intercellular communication in vitro. Food and Chemical Toxicology. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, vol. 164, June 2022, p. 1-13. ISSN 0278-6915. Available from: https://dx.doi.org/10.1016/j.fct.2022.113004.

JHA, Durga, Markéta NEZVEDOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. GANGLIOSIDE PROFILING IN CEREBRAL ORGANOIDS: EXPLORING AGING AND ALZHEIMER’S DISEASE RELATED CHANGES. In The International Mass Spectrometry Conference 2022, Maastricht, Netherland. 2022.

POSPÍŠIL, Jakub, Milos HRABOVSKY, Dáša BOHAČIAKOVÁ, Zuzana HOVADKOVA, Miroslav JURÁSEK, Jarmila MLČOUŠKOVÁ, Kamil PARUCH, Šárka NEVOLOVÁ, Jiří DAMBORSKÝ, Aleš HAMPL and Josef JAROŠ. Geometric Control of Cell Behavior by Biomolecule Nanodistribution. ACS BIOMATERIALS SCIENCE & ENGINEERING. WASHINGTON: AMER CHEMICAL SOC, 2022, vol. 8, No 11, p. 4789-4806. ISSN 2373-9878. Available from: https://dx.doi.org/10.1021/acsbiomaterials.2c00650.

BARÁK, Martin, Veronika FEDOROVÁ, Veronika POSPÍŠILOVÁ, Jan RAŠKA, Simona VOCHYÁNOVÁ, Jiří SEDMÍK, Hana HŘÍBKOVÁ, Hana KLÍMOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. Human iPSC-Derived Neural Models for Studying Alzheimer’s Disease: from Neural Stem Cells to Cerebral Organoids. Stem Cell Reviews and Reports. NEW YORK: SPRINGER, 2022, vol. 18, No 2, p. 792-820. ISSN 2629-3269. Available from: https://dx.doi.org/10.1007/s12015-021-10254-3.

KANDRA, Mário, Tereza VÁŇOVÁ, Vincent Alexander JONGEN, Aleš HAMPL, Dáša BOHAČIAKOVÁ and Josef JAROŠ. Microfluidic systems for easy and uniform generation of cerebral organoids. In PhD conference in Biomedical Sciences 2022. 2022.

KANDRA, Mário, Tereza VÁŇOVÁ, Vincent Alexander JONGEN, Aleš HAMPL, Dáša BOHAČIAKOVÁ and Josef JAROŠ. Microfluidic systems for easy and uniform generation of cerebral organoids. In The Biomania Student Scientific Meeting 2022. 2022.

KADÁKOVÁ, Soňa, Eva HOFERKOVÁ, Laura ONDRIŠOVÁ, Daniel FILIP, Josef VEČEŘA, Lenka KOŠŤÁLOVÁ, Miroslav BOUDNÝ, Michaela MEDKOVÁ, Pedro FARIA ZENI, Veronika PALUŠOVÁ, Jiří MAYER, Václav ŠEDA and Marek MRÁZ. Modelling chronic lymphocytic leukaemia microenvironment. In The Biomania Student Scientific Meeting, Brno. 2022.

PLEŠINGROVÁ, Klára, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Veronika POSPÍŠILOVÁ. Pathological SORLA protein variant in Alzheimer's disease development. In XXI. setkání biochemiků a molekulárních biologů. 2022. ISBN 978-80-280-0136-0.

NEZVEDOVÁ, Markéta, Tereza VÁŇOVÁ, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Single cerebral organoid mass spectrometry analysis: Towards neurodegenerative diseases. In The International Mass Spectrometry Conference 2022, Maastricht, Netherland. 2022.

KADÁKOVÁ, Soňa, Tereza VÁŇOVÁ, Jiří SEDMÍK, Petr FOJTÍK and Dáša BOHAČIAKOVÁ. Using a human pluripotent stem cell-based model to study the Alzheimer's disease pathogenesis in vitro. In Meeting of Biochemists and Molecular Biologists, Brno. 2022.

HOFERKOVÁ, Eva, Soňa KADÁKOVÁ, Václav ŠEDA, Tomáš LOJA, Gabriela MLADONICKÁ PAVLASOVÁ, Jan VERNER, Václav CHOCHOLA, Josef JAROŠ, Květoslava LIŠKOVÁ, Daniel FILIP, Josef VEČEŘA, Pedro FARIA ZENI, Jana DORAZILOVÁ, Eva ONDROUŠKOVÁ, Laura ONDRIŠOVÁ, Miroslav BOUDNÝ, Leoš KŘEN, Lucy VOJTOVÁ, Jiří MAYER and Marek MRÁZ. Versatile coculture systém to study chronic lymhocytic leukemia proliferation. In CEITEC PhD Conference, Brno. 2022.

QUIN, Jaclyn Elizabeth, Jiří SEDMÍK, Dragana VUKIĆ, Anzer KHAN, Liam KEEGAN and Mary Anne O'CONNELL. ADAR RNA Modifications, the Epitranscriptome and Innate Immunity. Trends in Biochemical Sciences. Cambridge (MA): Cell Press, 2021, vol. 46, No 9, p. 758-771. ISSN 0968-0004. Available from: https://dx.doi.org/10.1016/j.tibs.2021.02.002.

MAROOFIAN, Reza, Jiří SEDMÍK, Neda MAZAHERI, Marcello SCALA, Maha S. ZAKI, Liam KEEGAN, Reza AZIZIMALAMIRI, Mahmoud ISSA, Gholamreza SHARIATI, Alireza SEDAGHAT, Christian BEETZ, Peter BAUER, Hamid GALEHDARI, Mary Anne O'CONNELL and Henry HOULDEN. Biallelic variants in ADARB1, encoding a dsRNA-specific adenosine deaminase, cause a severe developmental and epileptic encephalopathy. Journal of Medical Genetics. London (UK): BMJ Publishing Group, 2021, vol. 58, No 7, p. 495-504. ISSN 0022-2593. Available from: https://dx.doi.org/10.1136/jmedgenet-2020-107048.

FOJTÍK, Petr, Deborah BECKEROVÁ, Kateřina HOLOMKOVÁ, Martin ŠENFLUK and Vladimír ROTREKL. Both Hypoxia-Inducible Factor 1 and MAPK Signaling Pathway Attenuate PI3K/AKT via Suppression of Reactive Oxygen Species in Human Pluripotent Stem Cells. Frontiers in Cell and Developmental Biology. Lausanne: Frontiers Media S.A., 2021, vol. 8, JAN 2021, p. 1-18. ISSN 2296-634X. Available from: https://dx.doi.org/10.3389/fcell.2020.607444.

JELÍNKOVÁ, Šárka, Yvonne SLEIMAN, Petr FOJTÍK, Franck AIMOND, Amanda FINAN, Gerald HUGON, Valerie SCHEUERMANN, Deborah BECKEROVÁ, Olivier CAZORLA, Marie VINCENTI, Pascal AMEDRO, Sylvain RICHARD, Josef JAROŠ, Petr DVOŘÁK, Alain LACAMPAGNE, Gilles CARNAC, Vladimír ROTREKL and Albano C. MELI. Dystrophin Deficiency Causes Progressive Depletion of Cardiovascular Progenitor Cells in the Heart. International Journal of Molecular Sciences. Basel: MDPI, 2021, vol. 22, No 9, p. 1-20. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms22095025.

ŠEDA, Václav, Eva VOJÁČKOVÁ, Laura ONDRIŠOVÁ, Lenka KOŠŤÁLOVÁ, Sonali SHARMA, Tomáš LOJA, Gabriela MLADONICKÁ PAVLASOVÁ, Daniel ZICHA, Marie KUDLIČKOVÁ PEŠKOVÁ, Jan KŘIVÁNEK, Květoslava MATULOVÁ, Leoš KŘEN, V. BENES, Markéta LITZMANOVÁ, Marek BORSKÝ, Jan OPPELT, Jan VERNER, Šárka POSPÍŠILOVÁ, Yvona BRYCHTOVÁ, Anna PANOVSKÁ, Z. TAN, S.X. ZHANG, Michael DOUBEK, Kateřina AMRUZ ČERNÁ, Jiří MAYER and Marek MRÁZ. FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia. Blood. Washington DC, USA: American Society of Hematology, 2021, vol. 138, No 9, p. 758-772. ISSN 0006-4971. Available from: https://dx.doi.org/10.1182/blood.2020008101.

RAŠKA, Jan, Hana HŘÍBKOVÁ, Hana KLÍMOVÁ, Veronika FEDOROVÁ, Martin BARÁK, Tomáš BÁRTA, Veronika POSPÍŠILOVÁ, Simona VOCHYÁNOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. Generation of six human iPSC lines from patients with a familial Alzheimer's disease (n=3) and sex- and age-matched healthy controls (n=3). Stem cell research. Amsterdam: Elsevier, 2021, vol. 53, May 2021, p. 1-5. ISSN 1873-5061. Available from: https://dx.doi.org/10.1016/j.scr.2021.102379.

RAŠKA, Jan, Hana KLÍMOVÁ, Kateřina SHEARDOVÁ, Veronika FEDOROVÁ, Hana HŘÍBKOVÁ, Veronika POSPÍŠILOVÁ, Simona VOCHYÁNOVÁ, Tereza VÁŇOVÁ and Dáša BOHAČIAKOVÁ. Generation of three human iPSC lines from patients with a spontaneous late-onset Alzheimer's disease and three sex- and age-matched healthy controls. Stem cell research. Amsterdam: Elsevier, 2021, vol. 53, May 2021, p. 1-5. ISSN 1873-5061. Available from: https://dx.doi.org/10.1016/j.scr.2021.102378.

FEDOROVÁ, Veronika, Tereza VÁŇOVÁ, Veronika POSPÍŠILOVÁ, Jan RAŠKA, Jiří SEDMÍK, Simona VOCHYÁNOVÁ, Hana HŘÍBKOVÁ and Dáša BOHAČIAKOVÁ. Glioblastom a cerebrální organoidy: zavedení a analýza in vitro modelu. In XXIV. Biologické dny 2021, Brno, 6.-7. 9. 2021. 2021.

JHA, Durga, Markéta NEZVEDOVÁ, Tereza VÁŇOVÁ, Lukáš OPÁLKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Characterization of Gangliosides in Cerebral Organoids: A New Avenue to Study Aging and Alzheimer’s Disease-Related Cerebral Changes. In Prague Meeting on Historical Perspectives of Mass Spectrometry, Prague, Czech Republic. 2021.

JHA, Durga, Tereza VÁŇOVÁ, Lukáš OPÁLKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Characterization of membrane lipids in cerebral organoids. In Czech Mass Spectrometry Conference 2021, 9th Conference of CSMS (Czech Society for Mass Spectrometry). 2021.

SHARMA, Sonali, Gabriela MLADONICKÁ PAVLASOVÁ, Václav ŠEDA, Kateřina AMRUZ ČERNÁ, Eva HOFERKOVÁ, Daniel FILIP, Laura ONDRIŠOVÁ, Veronika ŠANDOVÁ, Lenka KOŠŤÁLOVÁ, Pedro FARIA ZENI, Marek BORSKÝ, Jan OPPELT, K. LISKOVA, Leoš KŘEN, Andrea JANÍKOVÁ, Šárka POSPÍŠILOVÁ, S. FERNANDES, M. SHEHATA, L. RASSENTI, U. JAEGER, Michael DOUBEK, M. DAVIDS, J. BROWN, Jiří MAYER, T. KIPPS and Marek MRÁZ. Ibrutinib Blocks CD40 Signalling in CLL in Vivo by Reducing TRAF4 Levels. In XIX International Workshop on Chronic Lymphocytic Leukemia (iwCLL). 2021.

ŠANDOVÁ, Veronika, Gabriela MLADONICKÁ PAVLASOVÁ, Václav ŠEDA, Kateřina AMRUZ ČERNÁ, Sonali SHARMA, Veronika PALUŠOVÁ, Yvona BRYCHTOVÁ, Šárka POSPÍŠILOVÁ, S.M. FERNANDES, Anna PANOVSKÁ, Michael DOUBEK, M.S. DAVIDS, J.R. BROWN, Jiří MAYER and Marek MRÁZ. IL4-STAT6 signaling induces CD20 in chronic lymphocytic leukemia and this axis is repressed by PI3K delta inhibitor idelalisib. haematologica. PAVIA: FERRATA STORTI FOUNDATION, 2021, vol. 106, No 11, p. 2995-2999. ISSN 0390-6078. Available from: https://dx.doi.org/10.3324/haematol.2021.278644.

NEZVEDOVÁ, Markéta, Tereza VÁŇOVÁ, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Mass spectrometry-based targeted assay for profiling cell-specific and neurodegeneration protein markers in a single cerebral organoid. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section, České Budějovice, Czech Republic. 2021.

NEZVEDOVÁ, Markéta, Tereza VÁŇOVÁ, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Mass Spectrometry-Based Targeted Assay for Profiling Cell-Specific, Developmental and Neurodegeneration Protein Markers in a Single Cerebral Organoid. In Prague Meeting on Historical Perspectives of Mass Spectrometry, Prague, Czech Republic. 2021.

KANDRA, Mário, Tereza VÁŇOVÁ, Vincent Alexander JONGEN, Václav CHOCHOLA, Jakub POSPÍŠIL, Aleš HAMPL, Dáša BOHAČIAKOVÁ and Josef JAROŠ. Microfluidic system for easy and uniform generation of 3D cerebral organoids. In PhD conference of Biomedical Sciences 3.- 5. 11. 2021. 2021.

SHARMA, Sonali, Gabriela MLADONICKÁ PAVLASOVÁ, Václav ŠEDA, Kateřina AMRUZ ČERNÁ, E. VOJÁČKOVÁ, Daniel FILIP, Laura ONDRIŠOVÁ, Veronika ŠANDOVÁ, Lenka KOŠŤÁLOVÁ, Pedro FARIA ZENI, Michaela MEDKOVÁ, M. ZELINKOVÁ, Josef VEČEŘA, Miroslav BOUDNÝ, Jan OPPELT, K. LISKOVA, Leoš KŘEN, Andrea JANÍKOVÁ, Šárka POSPÍŠILOVÁ, SM. FERNANDES, M SHEHATA, LZ. RASSENTI, U. JAEGER, Michael DOUBEK, MS. DAVIDS, JR. BROWN, Jiří MAYER, TJ. KIPPS and Marek MRÁZ. miR-29 influences CD40 signaling in chronic lymphocytic leukemia (CLL): and axis affected by BCR inhibitors. In 21. Pražské hematologické dny a Post-ASH. 2021.

SHARMA, Sonali, Gabriela MLADONICKÁ PAVLASOVÁ, Václav ŠEDA, Kateřina AMRUZ ČERNÁ, Eva VOJÁČKOVÁ, Daniel FILIP, Laura ONDRIŠOVÁ, Veronika ŠANDOVÁ, Lenka KOŠŤÁLOVÁ, Pedro FARIA ZENI, Marek BORSKÝ, Jan OPPELT, Květoslava LIŠKOVÁ, Leoš KŘEN, Andrea JANÍKOVÁ, Šárka POSPÍŠILOVÁ, Stacey M. FERNANDES, Medhat SHEHATA, Laura Z. RASSENTI, Ulrich JAEGER, Michael DOUBEK, Matthew S. DAVIDS, Jennifer R. BROWN, Jiří MAYER, Thomas J. KIPPS and Marek MRÁZ. miR-29 Modulates CD40 Signaling in Chronic Lymphocytic Leukemia by Targeting TRAF4: an Axis Affected by BCR inhibitors. Blood. Washington, DC: American Society of Hematology, 2021, vol. 137, No 18, p. 2481-2494. ISSN 0006-4971. Available from: https://dx.doi.org/10.1182/blood.2020005627.

FEDOROVÁ, Veronika, Kateřina AMRUZ ČERNÁ, Veronika POSPÍŠILOVÁ, Jan RAŠKA, Tomáš BÁRTA, Marek MRÁZ and Dáša BOHAČIAKOVÁ. Název: The role of microRNA and protein-coding genes in the biology of neural stem cells. In Czech Neuroscience Society Meeting, Prague, 24.-25.11.2021. 2021.

NEZVEDOVÁ, Markéta, Tereza VÁŇOVÁ, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Profiling cell-specific, developmental, and neurodegeneration protein markers in a single cerebral organoid. In 69th ASMS Conference on Mass Spectrometry and Allied Topics, Philadelphia, USA, online. 2021.

NEZVEDOVÁ, Markéta, Tereza VÁŇOVÁ, Jan RAŠKA, Dáša BOHAČIAKOVÁ and Zdeněk SPÁČIL. Profiling cell-specific, developmental and neurodegenerative protein markers in cerebral organoids. In Czech Mass Spectrometry Conference 2021, 9th Conference of CSMS (Czech Society for Mass Spectrometry), Prague, Czech Republic. 2021.

BÁRTA, Tomáš, Dáša BOHAČIAKOVÁ and Lukáš ČAJÁNEK. Self-renewal in induced pluripotent stem cells. In Recent Advances in iPSC Technology. 2021, p. 179-207, 28 pp. ISBN 978-0-12-822231-7. Available from: https://dx.doi.org/10.1016/B978-0-12-822231-7.00007-2.

FRANEK, Michal, Agata Magdalena KILAR, Petr FOJTÍK, Marie OLSINOVA, Ales BENDA, Vladimír ROTREKL, Martina DVOŘÁČKOVÁ and Jiří FAJKUS. Super-resolution microscopy of chromatin fibers and quantitative DNA methylation analysis of DNA fiber preparations. Journal of Cell Science. Cambridge: Company of Biologists Ltd., 2021, vol. 134, No 15, p. 1-14. ISSN 0021-9533. Available from: https://dx.doi.org/10.1242/jcs.258374.

SUCHA, Rita, Martina KUBICKOVA, Jakub CERVENKA, Marian HRUSKA-PLOCHAN, Dáša BOHAČIAKOVÁ, Katerina KEPKOVA VODICKOVA, Tereza NOVAKOVA, Katerina BUDKOVA, Andrej SUSOR, Martin MARSALA, Jan MOTLIK, Hana KOVAROVA and Petr VODICKA. Targeted mass spectrometry for monitoring of neural differentiation. Biology Open. CAMBRIDGE: COMPANY BIOLOGISTS LTD, 2021, vol. 10, No 8, p. 1-13. ISSN 2046-6390. Available from: https://dx.doi.org/10.1242/bio.058727.

FILIP, Daniel, Sonali SHARMA, Kateřina MUSILOVÁ, Kateřina AMRUZ ČERNÁ, Lenka KOŠŤÁLOVÁ, Václav ŠEDA, Laura ONDRIŠOVÁ, Gabriela MLADONICKÁ PAVLASOVÁ, Miroslav BOUDNÝ, Josef VEČEŘA, E. VOJÁČKOVÁ, Michaela MEDKOVÁ, Veronika ŠANDOVÁ and Marek MRÁZ. The biology of miRNAs in B cell malignancies and their use as biomarkers. In Precision Diagnostics Europe. 2021.

CAPKOVA, Nikola, Veronika POSPÍŠILOVÁ, Veronika FEDOROVÁ, Jan RAŠKA, Katerina POSPISILOVA, Matteo DAL BEN, Ales DVORAK, Jitka VIKTOROVA, Dáša BOHAČIAKOVÁ and Libor VITEK. The Effects of Bilirubin and Lumirubin on the Differentiation of Human Pluripotent Cell-Derived Neural Stem Cells. Antioxidants. Basel: MDPI, 2021, vol. 10, No 10, p. 1-16. ISSN 2076-3921. Available from: https://dx.doi.org/10.3390/antiox10101532.

TAN, Tiong Yang, Jiří SEDMÍK, Mark P. FITZGERALD, Rivka SUKENIK HALEVY, Liam KEEGAN, Ingo HELBIG, Lina BASEL-SALMON, Lior COHEN, Rachel STRAUSSBERG, Wendy K. CHUNG, Mayada HELAL, Reza MAROOFIAN, Henry HOULDEN, Jane JUUSOLA, Simon SADEDIN, Lynn PAIS, Katherine B. HOWELL, Susan M. WHITE, John CHRISTODOULOU and Mary Anne O'CONNELL. Bi-allelic ADARB1 Variants Associated with Microcephaly, Intellectual Disability, and Seizures. The American Journal of Human Genetics. University of Chicago Press for the American Society of Human Genetics, 2020, vol. 106, No 4, p. 467-483. ISSN 0002-9297. Available from: https://dx.doi.org/10.1016/j.ajhg.2020.02.015.

ŠTĚTKOVÁ, Monika, Kateřina GROWKOVÁ, Petr FOJTÍK, Barbora VALČÍKOVÁ, Veronika PALUŠOVÁ, Amandine VERLANDE, Radek JORDA, Vladimír KRYŠTOF, Václav HEJRET, Panagiotis ALEXIOU, Vladimír ROTREKL and Stjepan ULDRIJAN. CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells. CELL DEATH & DISEASE. LONDON: NATURE PUBLISHING GROUP, 2020, vol. 11, No 9, p. 1-14. ISSN 2041-4889. Available from: https://dx.doi.org/10.1038/s41419-020-02971-3.

YAWER, Affiefa, Eliška SYCHROVÁ, Petra LABOHÁ, Jan RAŠKA, Tomas JAMBOR, Pavel BABICA and Iva SOVADINOVÁ. Endocrine-disrupting chemicals rapidly affect intercellular signaling in Leydig cells. Toxicology and applied pharmacology. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE, 2020, vol. 404, October 2020, p. 1-17. ISSN 0041-008X. Available from: https://dx.doi.org/10.1016/j.taap.2020.115177.

VEČEŘA, Josef, Jiřina PROCHÁZKOVÁ, Veronika ŠUMBEROVÁ, Veronika PÁNSKÁ, Hana PACULOVÁ, Martina KOHUTKOVÁ LÁNOVÁ, Jan MAŠEK, Dáša BOHAČIAKOVÁ, Emma Rachel ANDERSSON and Jiří PACHERNÍK. Hypoxia/Hif1 Alpha prevents premature neuronal differentiation of neural stem cells through the activation of Hes1. Stem Cell Research. Amsterdam: Elsevier, 2020, vol. 45, May 2020, p. 1-11. ISSN 1873-5061. Available from: https://dx.doi.org/10.1016/j.scr.2020.101770.

PEŠKOVÁ, Lucie, Denisa JURČÍKOVÁ, Tereza VÁŇOVÁ, Jan KŘIVÁNEK, Michaela CAPANDOVÁ, Zuzana ŠRÁMKOVÁ, Jana ŠEBESTÍKOVÁ, Magdaléna KOLOUŠKOVÁ, Hana KOTASOVÁ, Libor STREIT and Tomáš BÁRTA. miR-183/96/182 cluster is an important morphogenetic factor targetingPAX6expression in differentiating human retinal organoids. Stem Cells. Hoboken: Wiley-Blackwell, 2020, vol. 38, No 12, p. 1557-1567. ISSN 1066-5099. Available from: https://dx.doi.org/10.1002/stem.3272.

ČTVERÁČKOVÁ, Lucie, Daniel JANČULA, Jan RAŠKA, Pavel BABICA and Iva SOVADINOVÁ. Structure-Dependent Effects of Phthalates on Intercellular and Intracellular Communication in Liver Oval Cells. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2020, vol. 21, No 17, p. 1-21. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms21176069.

BOHAČIAKOVÁ, Dáša, Marian HRUSKA-PLOCHAN, Rachel TSUNEMOTO, Wesley D. GIFFORD, Shawn P. DRISCOLL, Thomas D. GLENN, Stephanie WU, Silvia MARSALA, Michael NAVARRO, Takahiro TADOKORO, Stefan JUHAS, Jana JUHASOVA, Oleksandr PLATOSHYN, David PIPER, Vickie SHECKLER, Dara DITSWORTH, Samuel L. PFAFF and Martin MARSALA. A scalable solution for isolating human multipotent clinical-grade neural stem cells from ES precursors. Stem Cell Research & Therapy. London: BMC, 2019, vol. 10, No 83, p. 1-19. ISSN 1757-6512. Available from: https://dx.doi.org/10.1186/s13287-019-1163-7.

WIATREK-MOUMOULIDIS, Dagmara Marta, Maria Elena CANDELA, Jiří SEDMÍK, Jan OPPELT, Liam KEEGAN and Mary Anne O'CONNELL. Activation of innate immunity by mitochondrial dsRNA in mouse cells lacking p53 protein. RNA. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 2019, vol. 25, No 6, p. 713-726. ISSN 1355-8382. Available from: https://dx.doi.org/10.1261/rna.069625.118.

SINIGAGLIA, Ketty, Dagmara WIATREK, Anzer KHAN, David MICHALÍK, Nagraj SAMBRANI, Jiří SEDMÍK, Dragana VUKIĆ, Mary Anne O'CONNELL and Liam KEEGAN. ADAR RNA editing in innate immune response phasing, in circadian clocks and in sleep. Biochimica et biophysica acta - Gene regulatory mechanisms. Amsterdam: Elsevier, 2019, vol. 1862, No 3, p. 356-369. ISSN 1874-9399. Available from: https://dx.doi.org/10.1016/j.bbagrm.2018.10.011.

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RENZOVÁ, Tereza, Dáša BOHAČIAKOVÁ, Milan EŠNER, Veronika POSPÍŠILOVÁ, Tomáš BÁRTA, Aleš HAMPL and Lukáš ČAJÁNEK. Inactivation of PLK4-STIL Module Prevents Self-Renewal and Triggers p53-Dependent Differentiation in Human Pluripotent Stem Cells. STEM CELL REPORTS. CAMBRIDGE: CELL PRESS, 2018, vol. 11, No 4, p. 959-972. ISSN 2213-6711. Available from: https://dx.doi.org/10.1016/j.stemcr.2018.08.008.

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FEDOROVÁ, Veronika, Martin BARÁK, Lina Mohamed Bahaael ELREFAE, Martina PETRÁŠOVÁ and Dáša BOHAČIAKOVÁ. p16/INK4A and cell cycle regulation in human embryonic and neural stem cell. In 1st Stem Cell Biology Meeting, Prušánky, 26.-27.4.2018. 2018.

FEDOROVÁ, Veronika, Aleš HAMPL and Dáša BOHAČIAKOVÁ. p16/INK4A and cell cycle regulation in human embryonic and neural stem cells. In XVIII. Interdisciplinary meeting of young life scientists, Milovy, 14.-17.5.2018. 2018.

ELREFAE, Lina Mohamed Bahaael, Veronika FEDOROVÁ, Martin BARÁK, Aleš HAMPL and Dáša BOHAČIAKOVÁ. p53 is involved in neural differentiation of pluripotent stem cell-derived cerebral organoids. In XVIII. Interdisciplinary Meeting of Young life scientists, Milovy, 14.-17.5.2018. 2018.

POROKH, Volodymyr, Petr VAŇHARA, Tomáš BÁRTA, Lucie JUREČKOVÁ, Dáša BOHAČIAKOVÁ, Veronika POSPÍŠILOVÁ, Daniela MINÁRIKOVÁ, Zuzana HOLUBCOVÁ, Vendula PELKOVÁ, Karel SOUCEK and Aleš HAMPL. Soluble Cripto-1 Induces Accumulation of Supernumerary Centrosomes and Formation of Aberrant Mitoses in Human Embryonic Stem Cells. Stem Cells and Development. NEW ROCHELLE: Mary Ann Liebert, Inc.., 2018, vol. 27, No 16, p. 1077-1084. ISSN 1547-3287. Available from: https://dx.doi.org/10.1089/scd.2018.0017.

BARÁK, Martin, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Stem cell models of Alzheimer’s disease. In 8th Annual meeting on stem cells, DNA damage and apoptosis, Karlov, 31.1.-3.2.2018. 2018.

STRNADEL, Jan, Cassiano CARROMEU, Cedric BARDY, Michael NAVARRO, Oleksandr PLATOSHYN, Andreas N. GLUD, Silvia MARSALA, Jozef KAFKA, Atsushi MIYANOHARA, Tomohisa KATO JR., Takahiro TADOKORO, Michael P. HEFFERAN, Kota KAMIZATO, Tetsuya YOSHIZUMI, Stefan JUHAS, Jana JUHASOVA, Chak-Sum HO, Taba KHERADMAND, PeiXi CHEN, Dáša BOHAČIAKOVÁ, Marian HRUSKA-PLOCHAN, Andrew J. TODD, Shawn P. DRISCOLL, Thomas D. GLENN, Samuel L. PFAFF, Jiri KLIMA, Joseph CIACCI, Eric CURTIS, Fred H. GAGE, Jack BUI, Kazuhiko YAMADA, Alysson R. MUOTRI and Martin MARSALA. Survival of syngeneic and allogeneic iPSC–derived neural precursors after spinal grafting in minipigs. Science Translational Medicine. Washington: American Association for the Advancement of Science, 2018, vol. 10, No 440, p. 1-14. ISSN 1946-6234. Available from: https://dx.doi.org/10.1126/scitranslmed.aam6651.

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ELREFAE, Lina Mohamed Bahaael, Veronika FEDOROVÁ, Martin BARÁK, Michaela KLOUČKOVÁ and Dáša BOHAČIAKOVÁ. The role of p53 in neural differentiation. In 8th Annual meeting on stem cells, DNA damage and apoptosis, Karlov, 31.1.-3.2.2018. 2018.

ELREFAE, Lina Mohamed Bahaael, Veronika FEDOROVÁ, Martin BARÁK, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Tumor suppressor p53 directs the differentiation of human pluripotent stem cells into cerebral organoids. In XIXI. Workshop of Biochemists and Molecular Biologists, Brno, 13.-14.11.2018. 2018.

VARUN, Divya, Gayathri Rajaram SRINIVASAN, Yi-Huan TSAI, Hyun-Je KIM, Joshua CUTTS, Francis PETTY, Ryan MERKLEY, Nicholas STEPHANOPOULOS, Dáša DOLEŽALOVÁ, Martin MARSALA and David A. BRAFMAN. A robust vitronectin-derived peptide for the scalable long-term expansion and neuronal differentiation of human pluripotent stem cell (hPSC)-derived neural progenitor cells (hNPCs). Acta Biomaterialia. Oxford: Elsevier BV, 2017, vol. 48, "neuvedeno", p. 120-130. ISSN 1742-7061. Available from: https://dx.doi.org/10.1016/j.actbio.2016.10.037.

BOHAČIAKOVÁ, Dáša, Tereza RENZOVÁ, Veronika FEDOROVÁ, Martin BARÁK, Michaela BOSÁKOVÁ, Aleš HAMPL and Lukáš ČAJÁNEK. An Efficient Method for Generation of Knockout Human Embryonic Stem Cells Using CRISPR/Cas9 System. Stem Cells and Development. New York: Mary Ann Liebert, Inc., 2017, vol. 26, No 21, p. 1521-1527. ISSN 1547-3287. Available from: https://dx.doi.org/10.1089/scd.2017.0058.

FEDOROVÁ, Veronika, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Cell cycle regulator p16/INK4A control in differentiation of human embryonic stem cells into neural stem cells. In XVIII. setkání biochemiků a molekulárních biologů, Brno, 14.-15.11.2017. 2017.

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BOHAČIAKOVÁ, Dáša. Diferenciace lidských embryonálních kmenových buněk do neurálních kmenových buněk - molekulární mechanismy a aplikace. In Stem Cells and Cell Therapy: from research to modern clinical application, Černá Hora, 5.-6.10.2017. 2017.

FEDOROVÁ, Veronika, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Different mechanisms of p16/INK4A regulation in human embryonic and neural stem cells. In The Biomania Student Scientific Meeting 2017, Brno, 3.10.2017. 2017.

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DOLEŽALOVÁ, Dáša, Veronika FEDOROVÁ and Aleš HAMPL. Human Embryonic Stem Cell-Derived Neural Stem Cells: Role Of Microrna And Cell Cycle In Shaping Stem Cell Identity. In ISSCR 2017 Annual Meeting, Boston, USA, 14.-17.6.2017. 2017.

FEDOROVÁ, Veronika, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Changes in regulatory mechanisms of p16/INK4A upon differentiation of human embryonic stem cells into neural stem cells. In Stem Cells and Cell Therapy: from research to modern clinical application, Černá Hora, 5.-6.10.2017. 2017.

BARÁK, Martin, Lina Mohamed Bahaaeldin ELREFAE, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Modeling Alzheimer’s disease in 3D cerebral organoids using human pluripotent stem cells. In The Biomania Students Scientific Meeting 2017, Brno, 3.10.2017. 2017.

BAGHERPOOR, Alireza Jian, Dáša DOLEŽALOVÁ, Tomáš BÁRTA, Martin KUČÍREK, Soodabeh Abbasi SANI, Milan EŠNER, Michaela BOSÁKOVÁ, Vladimír VINARSKÝ, Lucie PEŠKOVÁ, Aleš HAMPL and Michal ŠTROS. Properties of Human Embryonic Stem Cells and Their Differentiated Derivatives Depend on Nonhistone DNA-Binding HMGB1 and HMGB2 Proteins. Stem Cells and Development. New Rochelle: Mary Ann Liebert, 2017, vol. 26, No 5, p. 328-340. ISSN 1547-3287. Available from: https://dx.doi.org/10.1089/scd.2016.0274.

ELREFAE, Lina Mohamed Bahaaeldin, Martin BARÁK, Aleš HAMPL and Dáša BOHAČIAKOVÁ. Protein p53 regulates the differentiation of cerebral organoids from human pluripotent stem cells. In The Biomania Student Scientific Meeting 2017, Brno, 3.10.2017. 2017.

PETERKOVÁ, Miroslava and Dáša BOHAČIAKOVÁ. The role of microRNA-145 in differentiation of human embryonic stem cells-derived neural stem cells. In XVII. mezioborové setkání mladých biologů, biochemiků a chemiků, Milovy, 30.5.-1.6.2017. 2017.

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BARÁK, Martin, Veronika FEDOROVÁ, Lina Mohamed Bahaaeldin ELREFAE, Aleš HAMPL and Dáša BOHAČIAKOVÁ. 3D neural stem cells models in neurodegenerative diseases. In VI. Stem Cells and Cell Therapy: from research to modern clinical application, Černá Hora, 5.-6.10.2017. 2017.

KLOUČKOVÁ, Michaela, Veronika JURTÍKOVÁ, Zbyněk VORÁČ, Pavel HYRŠL, Libor STREIT, Josef JAROŠ, Dáša DOLEŽALOVÁ, Milan ALBERTI and Aleš HAMPL. Biocompatible nanofibers from polycaprolactone modified with silk sericin. In V. Mezinárodní konference - Stem Cells and Cell Therapy: From research to modern clinical application, Černá Hora, 20.-21.10.2016. 2016.

KLOUČKOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Pavel HYRŠL, Libor STREIT, Josef JAROŠ, Dáša DOLEŽALOVÁ, Milan ALBERTI and Aleš HAMPL. Biokompatibilní polykaprolaktonová nanovlákna modifikovaná sericinem. In XVI. mezioborové setkání mladých biologů, biochemiků a chemiků, Milovy, 10.-12.5.2016. 2016. ISSN 2336-7202.

DOLEŽALOVÁ, Dáša, Ondřej URBANOVSKÝ, Veronika FEDOROVÁ, Miroslava PETERKOVÁ, Veronika VALOUCHOVÁ and Aleš HAMPL. Cell cycle regulation and microRNA in clinically-relevant human embryonic stem cell-derived neural stem cells. In ISSCR 2016 Annual Meeting, San Francisco, California, USA, 22.-25.6.2016. 2016.

DOLEŽALOVÁ, Dáša. Clinically-relevant Human Embryonic Stem Cell-derived Neural Stem Cells: Role of Cell Cycle and MicroRNAs in Shaping Cell Identity. In 12th International Congress of Cell Biology, Praha, 21.-25.7.2016. 2016.

DOLEŽALOVÁ, Dáša. Human Embryonic Stem Cell-derived Neural Stem Cells: Role of Cell Cycle and MicroRNAs in Shaping Cell Identity. In 14th RNA Club, Brno, 16.9.2016. 2016.

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FEDOROVÁ, Veronika, Aleš HAMPL and Dáša DOLEŽALOVÁ. The Role and Regulation of p16/INK4A in Cell Cycle of Human Pluripotent and Neural Stem Cells. In 12th International Congress of Cell Biology, Praha, 21.-25.7.2016. 2016.

PETERKOVÁ, Miroslava, Aleš HAMPL and Dáša BOHAČIAKOVÁ. The role of microRNA in cell cycle regulation and differentiation of human embryonic stem cell – derived neural stem cells. In Stem Cells and Cell Therapy, Černá Hora, 20.-21.10.2016. 2016.

JIAN BAGHERPOOR, Alireza, Dáša DOLEŽALOVÁ, Tomáš BÁRTA, Soodabeh ABBASI SANI, Aleš HAMPL and Michal ŠTROS. An insight into the role of HMGB proteins in human pluripotent and multipotent cells. In Frontiers in material and life sciences: Creating life in 3D, Brno, 2.-4.9.2015. 2015.

KLOUČKOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Pavel HYRŠL, Libor STREIT, Josef JAROŠ, Dáša DOLEŽALOVÁ, Milan ALBERTI and Aleš HAMPL. Biocompatible polymeric nanofibers modified with silk sericin. In Frontiers in material and life sciences: Creating life in 3D. 2015. 2015.

JELÍNKOVÁ, Šárka, Aneta KOHUTOVÁ, Petr FOJTÍK, Tereza JURÁKOVÁ, Aleksandra VILOTIĆ, Martin PEŠL, Jan PŘIBYL and Vladimír ROTREKL. Dystrophin mutation causes higher DNA damage in pluripotent cells and depletion of cardiac progenitors in the heart. World Conference on Regenerative Medicine 2015, Leipzig, Germany, October 21–23 2015. 2015. ISSN 1746-0751.

DOLEŽALOVÁ, Dáša, Marek MRÁZ and Aleš HAMPL. MicroRNAs in Embryonic Stem Cells. In Chandan K. Sen. MicroRNA in regenerative medicine. London: Elsevier, 2015, p. 183-212. ISBN 978-0-12-405544-5. Available from: https://dx.doi.org/10.1016/B978-0-12-405544-5.00007-1.

DOLEŽALOVÁ, Dáša, Marek MRÁZ, Ondřej URBANOVSKÝ, Josef JAROŠ and Aleš HAMPL. The role of microRNA and HMGB proteins in cell cycle regulation and differentiation of human embryonic stem cell-derived neural stem cells. In ISSCR 13th Annual Meeting, Stockholm, Sweden, 24.-27.6.2015. 2015.

DOLEŽALOVÁ, Dáša, Marek MRÁZ, Josef JAROŠ and Aleš HAMPL. The role of microRNA in cell cycle regulation and differetiation of human embryonic stem cell-derived neural stem cells. In Frontiers in material and life sciences: Creating life in 3D, Brno, 2.-4.9.2015. 2015.

JUHASOVA, J., S. JUHAS, M. HRUSKA-PLOCHAN, Dáša DOLEŽALOVÁ, M. HOLUBOVA, J. STRNADEL, S. MARSALA, J. MOTLIK and M. MARSALA. Time Course of Spinal Doublecortin Expression in Developing Rat and Porcine Spinal Cord: Implication in In Vivo Neural Precursor Grafting Studies. Cellular and Molecular Neurobiology. New York: Springer, 2015, vol. 35, No 1, p. 57-70. ISSN 0272-4340. Available from: https://dx.doi.org/10.1007/s10571-014-0145-7.

DOLEŽALOVÁ, Dáša and Aleš HAMPL. Úloha microRNA v řízení buněčného dělení a diferenciace lidských embryonálních kmenových buněk do neurálních kmenových buněk. In XV. mezioborové setkání mladých biologů, biochemiků a chemiků 2015, Milovy, 12.-15.5.2015. 2015.