Publication Records

HERREROS, David, Roy R. LEDERMAN, James M. KRIEGER, Amaya JIMÉNEZ-MORENO, Marta MARTÍNEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Carlos O. S. SORZANO and José M. CARAZO. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials. Nature Communications. 2023, vol. 14, No 1, p. 1-10. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-35791-y.

SCHINDLER, Ondřej, Karel BERKA, Alessio CANTARA, Aleš KŘENEK, Dominik TICHÝ, Tomáš RAČEK and Radka SVOBODOVÁ. αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Research. Oxford: Oxford University Press, 2023, vol. 51, W1, p. "W11"-"W16", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad349.

BULLA, Lukas, Matej PIVOLUSKA, Kristian HJORTH, Oskar KOHOUT, Jan LANG, Sebastian ECKER, Sebastian P NEUMANN, Julius BITTERMANN, Robert KINDLER, Marcus HUBER, Martin BOHMANN and Rupert URSIN. Nonlocal Temporal Interferometry for Highly Resilient Free-Space Quantum Communication. Physical Review X. College Park: American Physical Society, 2023, vol. 13, No 2, p. 1-12. ISSN 2160-3308. Available from: https://dx.doi.org/10.1103/PhysRevX.13.021001.

APPEL, Paul, Alexander J. HEILMAN, Ezekiel W. WERTZ, David W. LYONS, Marcus HUBER, Matej PIVOLUSKA and Giuseppe VITAGLIANO. Finite-Function-Encoding Quantum States. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2022, vol. 6, No 708, p. 1-34. ISSN 2521-327X. Available from: https://dx.doi.org/10.22331/q-2022-05-09-708.

PIVOLUSKA, Matej and Martin PLESCH. Implementation of quantum compression on IBM quantum computers. Nature Scientific Reports. USA: NATURE PUBLISHING GROUP, 2022, vol. 12, No 1, p. 5841-5849. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-09881-8.

OŠLEJŠEK, Radek, Vít RUSŇÁK, Karolína DOČKALOVÁ BURSKÁ, Valdemar ŠVÁBENSKÝ, Jan VYKOPAL and Jakub ČEGAN. Conceptual Model of Visual Analytics for Hands-on Cybersecurity Training. IEEE Transactions on Visualization and Computer Graphics. 2021, vol. 27, No 8, p. 3425-3437. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.2977336.

RAI, A., Matej PIVOLUSKA, Martin PLESCH, S. SASMAL, M. BANIK and S. GHOSH. Device-independent bounds from Cabello's nonlocality argument. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 6, p. 1-7. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.062219.

JIRSÍK, Tomáš and Petr VELAN. Host Behavior in Computer Network: One-Year Study. IEEE Transactions on Network and Service Management. 2021, vol. 18, No 1, p. 822-838. ISSN 1932-4537. Available from: https://dx.doi.org/10.1109/TNSM.2020.3036528.

DODA, M., Matej PIVOLUSKA and Martin PLESCH. Choice of mutually unbiased bases and outcome labeling affecting measurement outcome secrecy. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 3, p. 032206-32213. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.032206.

NEUMANN, S.P., T. SCHEIDL, M. SELIMOVIC, Matej PIVOLUSKA, B. LIU, M. BOHMANN and R. URSIN. Model for optimizing quantum key distribution with continuous-wave pumped entangled-photon sources. Physical review A. New York: The American Physical Society, 2021, vol. 104, No 2, p. 022406-22416. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.104.022406.

HU, X.M., C. ZHANG, Y. GUO, F.X. WANG, W.B. XING, C.X. HUANG, B.H. LIU, Y.F. HUANG, C.F. LI, G.C. GUO, X.Q. GAO, Matej PIVOLUSKA and M. HUBER. Pathways for Entanglement-Based Quantum Communication in the Face of High Noise. Physical Review Letters. COLLEGE PK: The American Physical Society, 2021, vol. 127, No 11, p. 1-7. ISSN 0031-9007. Available from: https://dx.doi.org/10.1103/PhysRevLett.127.110505.

HUSÁK, Martin, Václav BARTOŠ, Pavol SOKOL and Andrej GAJDOŠ. Predictive Methods in Cyber Defense: Current Experience and Research Challenges. Future Generation Computer Systems. Elsevier, 2021, vol. 115, February, p. 517-530. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2020.10.006.

DODA, M., M. HUBER, G. MURTA, Matej PIVOLUSKA, Martin PLESCH and C. VLACHOU. Quantum Key Distribution Overcoming Extreme Noise: Simultaneous Subspace Coding Using High-Dimensional Entanglement. PHYSICAL REVIEW APPLIED. COLLEGE PK: AMER PHYSICAL SOC, 2021, vol. 15, No 3, p. 034003-34017. ISSN 2331-7019. Available from: https://dx.doi.org/10.1103/PhysRevApplied.15.034003.

PIVOLUSKA, Matej, Martin PLESCH, M. FARKAS, Natália RUŽIČKOVÁ, C. FLEGEL, N.H. VALENCIA, W. MCCUTCHEON, M. MALIK and EA AGUILAR. Semi-device-independent random number generation with flexible assumptions. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2021, vol. 7, No 1, p. 1-12. ISSN 2056-6387. Available from: https://dx.doi.org/10.1038/s41534-021-00387-1.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK and Otto DOSTÁL. Zero Watermarking: Critical Analysis of Its Role in Current Medical Imaging. Journal of Digital Imaging. 2021, vol. 34, No 1, p. 204-211. ISSN 0897-1889. Available from: https://dx.doi.org/10.1007/s10278-020-00396-0.

PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER and Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, vol. 108, July, p. 161-177. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2020.02.069.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, vol. 17, No 5, p. 1625-1638. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2019.2907492.

HU, Xiao-Min, WB. XING, C. ZHANG, BH. LIU, Matej PIVOLUSKA, M. HUBER, YF. HUANG, CF. LI and GC. GUO. Experimental creation of multi-photon high-dimensional layered quantum states. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2020, vol. 6, No 1, p. 1-5. ISSN 2056-6387. Available from: https://dx.doi.org/10.1038/s41534-020-00318-6.

VALENCIA, N.H., V. SRIVASTAV, Matej PIVOLUSKA, M. HUBER, N. FRIIS, W. MCCUTCHEON and M. MALIK. High-Dimensional Pixel Entanglement: Efficient Generation and Certification. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2020, vol. 4, December, p. 376-394. ISSN 2521-327X. Available from: https://dx.doi.org/10.22331/q-2020-12-24-376.

FRIÁK, Martin, Dušan LAGO, Nikola KOUTNÁ, David HOLEC, Tomáš REBOK and Mojmír ŠOB. Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites. Computer Physics Communications. Amsterdam: Elsevier, 2020, vol. 247, FEB 2020, p. 1-9. ISSN 0010-4655. Available from: https://dx.doi.org/10.1016/j.cpc.2019.106863.

HUSÁK, Martin, Tomáš BAJTOŠ, Jaroslav KAŠPAR, Elias BOU-HARB and Pavel ČELEDA. Predictive Cyber Situational Awareness and Personalized Blacklisting: A Sequential Rule Mining Approach. ACM Transactions on Management Information Systems. Association for Computing Machinery, 2020, vol. 11, No 4, p. 1-16. ISSN 2158-656X. Available from: https://dx.doi.org/10.1145/3386250.

ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, W1, p. 414-422. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz378.

VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.

HUSÁK, Martin, Jana KOMÁRKOVÁ, Elias BOU-HARB and Pavel ČELEDA. Survey of Attack Projection, Prediction, and Forecasting in Cyber Security. IEEE Communications Surveys & Tutorials. IEEE, 2019, vol. 21, No 1, p. 640-660. ISSN 1553-877X. Available from: https://dx.doi.org/10.1109/COMST.2018.2871866.

BAVARESCO, Jessica, Natalia Herrera VALENCIA, Claude KLÖCKL, Matej PIVOLUSKA, Paul ERKER, Nicolai FRIIS, Mehul MALIK and Marcus HUBER. Measurements in two bases are sufficient for certifying high-dimensional entanglement. Nature Physics. Nature Publishing Group, 2018, vol. 14, No 10, p. 1032-1040. ISSN 1745-2473. Available from: https://dx.doi.org/10.1038/s41567-018-0203-z.