Publication Records

ULLAH, Sajid, Klára PANZAROVÁ, Martin TRTÍLEK, Matej LEXA, Vojtěch MÁČALA, Thomas ALTMANN, Kerstin NEUMANN, Jan HEJÁTKO, Markéta PERNISOVÁ and Evgeny GLADILIN. High-throughput spike detection in greenhouse cultivated grain crops with attention mechanisms based deep learning models. Plant Phenomics. AAAS, 2024, vol. 2024, March, p. 1-11. ISSN 2643-6515. Available from: https://dx.doi.org/10.34133/plantphenomics.0155.

PERNISOVÁ, Markéta. Hormonal Regulation of Plant Regeneration. In Principal Investigator Seminars. 2024.

EBRAHIMI NAGHANI, Shekoufeh, Ján ŠMERINGAI, Barbora PLESKAČOVÁ, Tereza DOBISOVÁ, Klára PANZAROVÁ, Markéta PERNISOVÁ and Helene ROBERT BOISIVON. Integrative phenotyping analyses reveal the relevance of the phyB-PIF4 pathway in Arabidopsis thaliana reproductive organs at high ambient temperature. BMC PLANT BIOLOGY. ENGLAND: BMC, 2024. ISSN 1471-2229. Available from: https://dx.doi.org/10.1186/s12870-024-05394-w.

ZEZULKA, Štěpán, Marie KUMMEROVÁ, Ján ŠMERINGAI, Petr BABULA and Jan TŘÍSKA. Ambiguous changes in photosynthetic parameters of Lemna minor L. after short-term exposure to naproxen and paracetamol: Can the risk be ignored? Aquatic Toxicology. Elsevier B.V., 2023, vol. 259, June, p. 1-9. ISSN 0166-445X. Available from: https://dx.doi.org/10.1016/j.aquatox.2023.106537.

ŠMERINGAI, Ján, Petra PROCHÁZKOVÁ SCHRUMPFOVÁ and Markéta PERNISOVÁ. Cytokinins – Regulators of de novo Shoot Organogenesis. Frontiers in Plant Science. Lausanne: Frontiers Media SA, 2023, vol. 14, August 2023, p. 1-15. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2023.1239133.

BALAKHONOVA, Veronika, Tereza DOBISOVÁ, Zuzana BENEDIKTY, Klara PANZAROVA, Jaromir PYTELA, Radka KOCI, Ioannis SPYROGLOU, Ingrid KOVÁČOVÁ, Dominique ARNAUD, Jan SKALÁK, Martin TRTILEK and Jan HEJÁTKO. iReenCAM: automated imaging system for kinetic analysis of photosynthetic pigment biosynthesis at high spatiotemporal resolution during early deetiolation. Frontiers in Plant Science. Frontiers Media SA, 2023, vol. 14, April, p. 1-15. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2023.1093292.

DVOŘÁK TOMAŠTÍKOVÁ, Eva, Fen YANG, Kristína MLYNÁROVÁ, Said HAFIDH, Šárka SCHOŘOVÁ, Alžbeta KUSOVÁ, Markéta PERNISOVÁ, Tereza PŘEROVSKÁ, Božena KLODOVÁ, David HONYS, Jiří FAJKUS, Ales PECINKA and Petra PROCHÁZKOVÁ SCHRUMPFOVÁ. RUVBL proteins are involved in plant gametophyte development. Plant Journal. Wiley, 2023, vol. 114, No 2, p. 325-337. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.16136.

PÍREK, Pavlína, Karolína KRYŠTOFOVÁ, Ingrid KOVÁČOVÁ, Anna KROMEROVÁ, Dagmar ZACHOVÁ, Ondřej HELIA, Klara PANZAROVA, Jiří FAJKUS, Zbyněk ZDRÁHAL, Gabriela LOCHMANOVÁ and Miloslava FOJTOVÁ. Unraveling Epigenetic Changes in A. thaliana Calli: Impact of HDAC Inhibitors. PLANTS-BASEL. BASEL: MDPI, 2023, vol. 12, No 24, p. 1-16. ISSN 2223-7747. Available from: https://dx.doi.org/10.3390/plants12244177.

NIEDZIELA, Agnieszka, Lucyna DOMZALSKA, Wioletta DYNKOWSKA, Markéta PERNISOVÁ and Krystyna RYBKA. Aluminum Stress Induces Irreversible Proteomic Changes in the Roots of the Sensitive but Not the Tolerant Genotype of Triticale Seedlings. PLANTS-BASEL. BASEL: MDPI, 2022, vol. 11, No 2, p. 1-17. ISSN 2223-7747. Available from: https://dx.doi.org/10.3390/plants11020165.

ZHANG, Yue, Michael HENKE, Yiming LI, Demin XU, Anhua LIU, Xingan LIU and Tianlai LI. Analyzing the Impact of Greenhouse Planting Strategy and Plant Architecture on Tomato Plant Physiology and Estimated Dry Matter. Frontiers in Plant Science. Lausanne: FRONTIERS MEDIA SA, 2022, vol. 13, February, p. 1-19. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.828252.

MOR, Eliana, Markéta PERNISOVÁ, Max MINNE, Guillaume CERUTTI, Dagmar RIPPER, Jonah NOLF, Jennifer ANDRES, Laura RAGNI, Matias D. ZURBRIGGEN, Bert DE RYBEL and Teva VERNOUX. bHLH heterodimer complex variations regulate cell proliferation activity in the meristems of Arabidopsis thaliana. ISCIENCE. UNITED STATES: CELL PRESS, 2022, vol. 25, No 11, p. 105364-105382. ISSN 2589-0042. Available from: https://dx.doi.org/10.1016/j.isci.2022.105364.

PERNISOVÁ, Markéta, Klára HOYEROVÁ, Jan HEJÁTKO and Ondřej NOVÁK. Cytokinin Forefront Research 2022. 2022.

NARISETTI, Narendra, Michael HENKE, Kerstin NEUMANN, Frieder STOLZENBURG, Thomas ALTMANN and Evgeny GLADILIN. Deep Learning Based Greenhouse Image Segmentation and Shoot Phenotyping (DeepShoot). Frontiers in Plant Science. Lausanne: FRONTIERS MEDIA SA, 2022, vol. 13, JUL, p. 1-16. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.906410.

LIU, Anhua, Demin XU, Michael HENKE, Yue ZHANG, Yiming LI, Xingan LIU and Tianlai LI. Determination of the Optimal Orientation of Chinese Solar Greenhouses Using 3D Light Environment Simulations. REMOTE SENSING. SWITZERLAND: MDPI, 2022, vol. 14, No 4, p. 1-17. ISSN 2072-4292. Available from: https://dx.doi.org/10.3390/rs14040912.

OLEKSIAK, Tadeusz, Ioannis SPYROGLOU, Darmara PACON, Przemysław MATYSIK, Markéta PERNISOVÁ and Krystyna RYBKA. Effect of drought on wheat production in Poland between 1961 and 2019. Crop Science. Madison: Crop Science Society of America, 2022, vol. 62, No 2, p. 728-743. ISSN 0011-183X. Available from: https://dx.doi.org/10.1002/csc2.20690.

HEJÁTKO, Jan, Jiří FAJKUS, Zbyněk ZDRÁHAL, Natallia MADZIA VALASEVICH, Helene ROBERT BOISIVON and František FORET. Green Biotech Workshop 2022. 2022.

SPYROGLOU, Ioannis, Krystyna RYBKA, Paweł CZEMBOR, Dominika PIASKOWSKA, Markéta PERNISOVÁ and Przemysław MATYSIK. Higher alterations in leaf fluorescence parameters of wheat cultivars predict more extensive necrosis in response to Zymoseptoria tritici. PLANT PATHOLOGY. ENGLAND: WILEY, 2022, vol. 71, No 6, p. 1454-1466. ISSN 0032-0862. Available from: https://dx.doi.org/10.1111/ppa.13569.

LARDON, Robin, Hoang Khai TRINH, Xiangyu XU, Lam Dai VU, Brigitte VAN DE COTTE, Markéta PERNISOVÁ, Steffen VANNESTE, Ive DE SMET and Danny GEELEN. Histidine kinase inhibitors impair shoot regeneration in Arabidopsis thaliana via cytokinin signaling and SAM patterning determinants. Frontiers in Plant Science. Frontiers Media S.A., 2022, vol. 13, September, p. 1-22. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.894208.

NEMERGUT, Michal, Tereza BÁŤKOVÁ, Dana VIGAŠOVÁ, Milan BARTOŠ, Martina HLOZANKOVA, Andrea SMITH, Barbora LIŠKOVÁ, Kateřina SHEARDOVÁ, Martin VYHNALEK, Jakub HORT, Jan LACZO, Ingrid KOVÁČOVÁ, Michal ŠITINA, Radoslav MATEJ, Radim JANČÁLEK, Martin MAREK and Jiří DAMBORSKÝ. Increased occurrence of Treponema spp. and double-species infections in patients with Alzheimer's disease. Science of the Total Environment. Amsterdam: Elsevier Science, 2022, vol. 844, October 2022, p. 1-7. ISSN 0048-9697. Available from: https://dx.doi.org/10.1016/j.scitotenv.2022.157114.

LIU, Anhua, Michael HENKE, Yiming LI, Yue ZHANG, Demin XU, Xingan LIU and Tianlai LI. Investigation of the impact of supplemental reflective films to improve micro-light climate within tomato plant canopy in solar greenhouses. Frontiers in Plant Science. Lausanne: FRONTIERS MEDIA SA, 2022, vol. 13, AUG, p. 1-16. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.966596.

ANTONIADI, Ioanna, Eduardo MATEO-BONMATÍ, Markéta PERNISOVÁ, Federica BRUNONI, Mariana ANTONIADI, Mauricio Garcia-Atance VILLALONGA, Anita AMENT, Michal KARÁDY, Colin TURNBULL, Karel DOLEŽAL, Aleš PĚNČÍK, Karin LJUNG and Ondřej NOVÁK. IPT9, a cis-zeatin cytokinin biosynthesis gene, promotes root growth. Frontiers in Plant Science. SWITZERLAND: Frontiers Media S.A., 2022, vol. 13, No 10, p. 1-15. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.932008.

TICHÝ, Boris and Markéta PERNISOVÁ. Mendel Genetics Conference 2022: Tours at CEITEC. 2022.

HAKL, Roman, Pavel KUKLÍNEK, Marta SOBOTKOVA, Irena KRCMOVA, Pavlina KRALICKOVA, Martina VACHOVA, Jana HANZLIKOVA, Martina NOVACKOVA, Michal SVOBODA, Ingrid KOVÁČOVÁ and Jiří LITZMAN. Registry-based analysis of Icatibant and C1-inhibitor use in treatment of laryngeal attacks of hereditary angioedema. CLINICAL AND EXPERIMENTAL ALLERGY. HOBOKEN: WILEY, 2022, vol. 52, No 8, p. 994-997. ISSN 0954-7894. Available from: https://dx.doi.org/10.1111/cea.14182.

ZHANG, Yue, Michael HENKE, Yiming LI, Demin XU, Anhua LIU, Xingan LIU and Tianlai LI. Towards the maximization of energy performance of an energy-saving Chinese solar greenhouse: A systematic analysis of common greenhouse shapes. Solar Energy. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, vol. 236, APR, p. 320-334. ISSN 0038-092X. Available from: https://dx.doi.org/10.1016/j.solener.2022.03.013.

HENKE, Michael and Evgeny GLADILIN. Virtual Laser Scanning Approach to Assessing Impact of Geometric Inaccuracy on 3D Plant Traits. REMOTE SENSING. MDPI, 2022, vol. 14, No 19, p. 1-19. ISSN 2072-4292. Available from: https://dx.doi.org/10.3390/rs14194727.

PERNISOVÁ, Markéta and Teva VERNOUX. Auxin Does the SAMba: Auxin Signaling in the Shoot Apical Meristem. COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY. New York: Cold Spring Harbor Laboratory Press, 2021, vol. 13, No 12, p. „a039925“, 13 pp. ISSN 1943-0264. Available from: https://dx.doi.org/10.1101/cshperspect.a039925.

GELOVÁ, Zuzana, Michelle GALLEI, Markéta PERNISOVÁ, Géraldine BRUNOUD, Xixi ZHANG, Matouš GLANC, Lanxin LI, Jaroslav MICHALKO, Zlata PAVLOVIČOVÁ, Inge VERSTRAETEN, Huibin HAN, Jakub HAJNÝ, Robert HAUSCHILD, Milada ČOVANOVÁ, Marta ZWIEWKA, Lukas HOERMAYER, Matyáš FENDRYCH, Tongda XU, Teva VERNOUX and Jiří FRIML. Developmental roles of Auxin Binding Protein 1 in Arabidopsis thaliana. Plant Science. Ireland: Elsevier, 2021, vol. 303, February, p. 1-17. ISSN 0168-9452. Available from: https://dx.doi.org/10.1016/j.plantsci.2020.110750.

ZHANG, Y., Michael HENKE, G.H. BUCK-SORLIN, Y.M. LI, H. XU, X.A. LIU and T.L. LI. Estimating canopy leaf physiology of tomato plants grown in a solar greenhouse: Evidence from simulations of light and thermal microclimate using a Functional-Structural Plant Model. Agricultural and Forest Meteorology. AMSTERDAM: Elsevier, 2021, vol. 307, SEP, p. 108494-108510. ISSN 0168-1923. Available from: https://dx.doi.org/10.1016/j.agrformet.2021.108494.

NARISETTI, N., Michael HENKE, C. SEILER, A. JUNKER, J. OSTERMANN, T. ALTMANN and E. GLADILIN. Fully-automated root image analysis (faRIA). Nature Scientific Reports. London: NATURE RESEARCH, 2021, vol. 11, No 1, p. 16047-16061. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-021-95480-y.

PERNISOVÁ, Markéta. Hormonal Regulations of de novo Organogenesis. In Mendel Centre Seminar. 2021.

ABDELHAKIM, L.O.A., E. ROSENQVIST, B. WOLLENWEBER, Ioannis SPYROGLOU, C.O. OTTOSEN and K. PANZAROVA. Investigating Combined Drought- and Heat Stress Effects in Wheat under Controlled Conditions by Dynamic Image-Based Phenotyping. AGRONOMY-BASEL. BASEL: MDPI, 2021, vol. 11, No 2, p. 364-385. ISSN 2073-4395. Available from: https://dx.doi.org/10.3390/agronomy11020364.

SPYROGLOU, Ioannis, Jan SKALÁK, Veronika BALAKHONOVA, Z. BENEDIKTY, A.G. RIGAS and Jan HEJÁTKO. Mixed Models as a Tool for Comparing Groups of Time Series in Plant Sciences. PLANTS-BASEL. BASEL: MDPI, 2021, vol. 10, No 2, p. 362-377. ISSN 2223-7747. Available from: https://dx.doi.org/10.3390/plants10020362.

SPYROGLOU, Ioannis, K. RYBKA, R.M. RODRIGUEZ, P. STEFANSKI and Natallia MADZIA VALASEVICH. Quantitative estimation of water status in field-grown wheat using beta mixed regression modelling based on fast chlorophyll fluorescence transients: A method for drought tolerance estimation. JOURNAL OF AGRONOMY AND CROP SCIENCE. HOBOKEN: WILEY, 2021, vol. 207, No 4, p. 589-605. ISSN 0931-2250. Available from: https://dx.doi.org/10.1111/jac.12473.

HENKE, Michael, K. NEUMANN, T. ALTMANN and E. GLADILIN. Semi-Automated Ground Truth Segmentation and Phenotyping of Plant Structures Using k-Means Clustering of Eigen-Colors (kmSeg). AGRICULTURE-BASEL. BASEL: MDPI, 2021, vol. 11, No 11, p. 1098-1110. ISSN 2077-0472. Available from: https://dx.doi.org/10.3390/agriculture11111098.

ZHU, J.Q., F. GOU, G. ROSSOUW, F. BEGUM, Michael HENKE, E. JOHNSON, B. HOLZAPFEL, S. FIELD, A. SELEZNYOVA and S.P. LONG. Simulating organ biomass variability and carbohydrate distribution in perennial fruit crops: a comparison between the common assimilate pool and phloem carbohydrate transport models. IN SILICO PLANTS. OXFORD: OXFORD UNIV PRESS, 2021, vol. 3, No 2, p. „diab024“, 20 pp. ISSN 2517-5025. Available from: https://dx.doi.org/10.1093/insilicoplants/diab024.

ANAGNOSTOPOULOS, G., Ioannis SPYROGLOU, A. RIGAS, P. PREKA-PAPADEMA, H. MAVROMICHALAKI and I. KIOSSES. The sun as a significant agent provoking earthquakes. EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS. 2021, vol. 230, No 1, p. 287-333. ISSN 1951-6355. Available from: https://dx.doi.org/10.1140/epjst/e2020-000266-2.

ULLAH, Sajid, Michael HENKE, N. NARISETTI, K. PANZAROVA, M. TRTILEK, Jan HEJÁTKO and E. GLADILIN. Towards Automated Analysis of Grain Spikes in Greenhouse Images Using Neural Network Approaches: A Comparative Investigation of Six Methods. IEEE Sensors Journal. BASEL: IEEE Sensors Council, 2021, vol. 21, No 22, p. „7441“, 22 pp. ISSN 1424-8220. Available from: https://dx.doi.org/10.3390/s21227441.

LYČKA, Martin, Vratislav PEŠKA, Martin DEMKO, Ioannis SPYROGLOU, Agata Magdalena KILAR, Jiří FAJKUS and Miloslava FOJTOVÁ. WALTER: an easy way to online evaluate telomere lengths from terminal restriction fragment analysis. BMC Bioinformatics. London: BioMed Central, 2021, vol. 22, No 1, p. "145", 14 pp. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-021-04064-0.

MICHAILIDIS, G.E., Ioannis SPYROGLOU, D. ZARIDIS and A.G. RIGAS. A Method of Estimating the Partial Power Spectrum of a Bivariate Point Process and an Application to a Neurophysiological Data Set. JOURNAL OF STATISTICAL THEORY AND PRACTICE. NEW YORK: SPRINGER, 2020, vol. 14, No 3, p. 36-49. ISSN 1559-8608. Available from: https://dx.doi.org/10.1007/s42519-020-00105-8.

HEJÁTKO, Jan, Jiří FAJKUS, Zbyněk ZDRÁHAL, Natallia MADZIA VALASEVICH, Helene ROBERT BOISIVON and František FORET. SINGING Plant Miniconference. 2020.

SAMSONOVÁ, Zuzana, Nagavalli Subbanna KIRAN, Ondřej NOVÁK, Ioannis SPYROGLOU, Jan SKALÁK, Jan HEJÁTKO and Vít GLOSER. Steady-State Levels of Cytokinins and Their Derivatives May Serve as a Unique Classifier of Arabidopsis Ecotypes. Plants. Basel: MDPI, 2020, vol. 9, No 1, p. 1-17. ISSN 2223-7747. Available from: https://dx.doi.org/10.3390/plants9010116.

FAJKUS, Jiří, Zbyněk ZDRÁHAL, Natallia MADZIA VALASEVICH, Helene ROBERT BOISIVON, František FORET and Jan HEJÁTKO. Green Biotech Workshop. 2019.

MÁCOVÁ, Kateřina, Lenka PÁTKOVÁ and Helene ROBERT BOISIVON. Influence of high temperatures on seed development of Brassica napus cultivars. In ACDP 2018 International Symposium. 2018.

MADZIA VALASEVICH, Natallia. 2nd CzPPN meeting. 2018.

PAVLIŠTOVÁ, Veronika, Martina DVOŘÁČKOVÁ, Michal JEŽ, Iva MOZGOVÁ, Petr MOKROŠ and Jiří FAJKUS. Phenotypic reversion in fas mutants of Arabidopsis thaliana by reintroduction of FAS genes: variable recovery of telomeres with major spatial rearrangements and transcriptional reprogramming of 45S rDNA genes. Plant Journal. Hoboken: Wiley-Blackwell, 2016, vol. 88, No 3, p. 411-424. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.13257.

JAŠKE, Karin, Petr MOKROŠ, Iva MOZGOVÁ, Miloslava FOJTOVÁ and Jiří FAJKUS. A telomerase-independent component of telomere loss in chromatin assembly factor 1 mutants of Arabidopsis thaliana. Chromosoma. Springer, 2013, vol. 122, No 4, p. 285-293. ISSN 0009-5915. Available from: https://dx.doi.org/10.1007/s00412-013-0400-6.

PONTVIANNE, Frédéric N., Todd BLEVINS, Chinmayi CHANDRASEKHARA, Iva MOZGOVÁ, Christiane HASSEL, Olga M.F. PONTES, Tucker TUCKER, Petr MOKROŠ, Veronika MUCHOVÁ, Jiří FAJKUS and Craig S. PIKAARD. Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states. GENES & DEVELOPMENT. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT, 2013, vol. 27, No 14, p. 1545-1550. ISSN 0890-9369. Available from: https://dx.doi.org/10.1101/gad.221648.113.

SÝKOROVÁ, Eva, Jana FULNEČKOVÁ, Petr MOKROŠ, Jiří FAJKUS, Miloslava FOJTOVÁ and Vratislav PEŠKA. Three TERT genes in Nicotiana tabacum. Chromosome Research. Netherlands: Springer, 2012, vol. 20, No 4, p. 381-394. ISSN 0967-3849. Available from: https://dx.doi.org/10.1007/s10577-012-9282-3.

PROCHÁZKOVÁ SCHRUMPFOVÁ, Petra, Miloslava FOJTOVÁ, Petr MOKROŠ, Klaus D. GRASSER and Jiří FAJKUS. Role of HMGB Proteins in Chromatin Dynamics and Telomere Maintenance in Arabidopsis thaliana. CURRENT PROTEIN & PEPTIDE SCIENCE. BENTHAM SCIENCE PUBL LTD, 2011, vol. 12, No 2, p. 105-111. ISSN 1389-2037.

MOZGOVÁ, Iva, Petr MOKROŠ and Jiří FAJKUS. Dysfunction of Chromatin Assembly Factor 1 Induces Shortening of Telomeres and Loss of 45S rDNA in Arabidopsis thaliana. Plant Cell. United States: AMER SOC PLANT BIOLOGISTS, 2010, vol. 22, No 8, p. 2768-2780, 14 pp. ISSN 1040-4651.