Výpis publikací

SMOLKO, Martin, Anna VYHLÍDALOVÁ KOTRBOVÁ, Anežka CELÁ, Jan KOTOUČEK, Karel SOUČEK, Vítězslav BRYJA a Vendula HLAVÁČKOVÁ POSPÍCHALOVÁ. CRISPR CAS9 ENGINEERED TETRASPANIN DEFICIENT CELL LINES FOR THE ANALYSIS OF EXTRACELLULAR VESICLES. In 12th International Conference Analytical Cytometry. 2023.

PAPAGEORGIOU, Anna, Michaela POSPÍŠILOVÁ, Jakub CIBULKA, Raghib ASHRAF, Christopher WAUDBY, Pavel KADEŘÁVEK, Volha MAROZ, Karel KUBÍČEK, Zbyněk PROKOP, Lumír KREJČÍ a Konstantinos TRIPSIANES. Recognition and coacervation of G-quadruplexes by a multifunctional disordered region in RECQ4 helicase. Nature Communications. Berlin: Nature, 2023, roč. 14, č. 1, s. 1-19. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-023-42503-z.

VYMETAL, Jiri, Katerina MERTOVA, Kristyna BOUSOVA, Josef SULC, Konstantinos TRIPSIANES a Jiri VONDRASEK. Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x-ray reference structures as a prediction benchmark. Proteins: Structure, Function, and Bioinformatics. 2022, roč. 90, č. 12, s. 2067-2079. ISSN 0887-3585. Dostupné z: https://dx.doi.org/10.1002/prot.26398.

YPERMAN, K., Anna PAPAGEORGIOU, R. MERCERON, S. DE MUNCK, Y. BLOCH, D. EECKHOUT, Q.H. JIANG, P. TACK, R. GRIGORYAN, Thomas EVANGELIDIS, J. VAN LEENE, L. VINCZE, P. VANDENABEELE, F. VANHAECKE, M. POTOCKY, G. DE JAEGER, S.N. SAVVIDES, Konstantinos TRIPSIANES, R. PLESKOT a D. VAN DAMME. Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. "3050", 11 s. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-021-23314-6.

JURÁSEK, Miroslav, Jitender KUMAR, Petra PACLÍKOVÁ, Alka Kumari JADAUN, Konstantinos TRIPSIANES, Vítězslav BRYJA a Robert VÁCHA. Phosphorylation-induced changes in the PDZ domain of Dishevelled 3. Scientific Reports. NATURE PUBLISHING GROUP, 2021, roč. 11, č. 1, s. "1484", 14 s. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-020-79398-5.

BOUSOVA, K., L. BEDNAROVA, M. ZOUHAROVA, V. VETYSKOVA, K. POSTULKOVA, K. HOFBAUEROVA, O. PETRVALSKA, O. VANEK, Konstantinos TRIPSIANES a J. VONDRASEK. The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization. Protein Science. HOBOKEN: JOHN WILEY & SONS INC, 2021, roč. 30, č. 8, s. 1653-1666. ISSN 0961-8368. Dostupné z: https://dx.doi.org/10.1002/pro.4107.

BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS a Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.

EVANGELIDIS, Thomas a Konstantinos TRIPSIANES. 4D-CHAINS. 2021.

HUBLIKAR, M., V. KADU, Jitender KUMAR, D. RAUT, S. SHIRAME, P. MAKAM a R. BHOSALE. (E)-2-(2-Allylidenehydrazinyl)thiazole derivatives: Design, green synthesis, in silico and in vitro antimycobacterial and radical scavenging studies. Archiv der Pharmazie. Weinheim: Verlag Chemie, 2020, roč. 353, č. 7, s. 2000003-2000014. ISSN 0365-6233. Dostupné z: https://dx.doi.org/10.1002/ardp.202000003.

BOSÁKOVÁ, Michaela, Sara POOVAKULATHU ABRAHAM, Alexandru NITĂ, Eva HRUBA, Marcela BUCHTOVA, S. Paige TAYLOR, Ivan DURAN, Jorge MARTIN, Kateřina SVOZILOVÁ, Tomáš BÁRTA, Miroslav VAŘECHA, Lukáš BÁLEK, Jiri KOHOUTEK, Tomasz Witold RADASZKIEWICZ, Ganesh V. PUSAPATI, Vítězslav BRYJA, Eric T. RUSH, Isabelle THIFFAULT, Deborah A. NICKERSON, Michael J. BAMSHAD, Rajat ROHATGI, Daniel H. COHN, Deborah KRAKOW a Pavel KREJČÍ. Mutations in GRK2 cause Jeune syndrome by impairing Hedgehog and canonical Wnt signaling. EMBO MOLECULAR MEDICINE. HOBOKEN: WILEY-BLACKWELL, 2020, roč. 12, č. 11, s. 1-20. ISSN 1757-4676. Dostupné z: https://dx.doi.org/10.15252/emmm.201911739.

SPIT, Maureen, Nicola FENDERICO, Ingrid JORDENS, Tomasz Witold RADASZKIEWICZ, Rik G. H. LINDEBOOM, Jeroen M. BUGTER, Alba CRISTOBAL, Lars OOTES, Max VAN OSCH, Eline JANSSEN, Kim E. BOONEKAMP, Kateřina HANÁKOVÁ, David POTĚŠIL, Zbyněk ZDRÁHAL, Sylvia F. BOJ, Jan Paul MEDEMA, Vítězslav BRYJA, Bon-Kyoung KOO, Michiel VERMEULEN a Madelon M. MAURICE. RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. EMBO Journal. Hoboken (USA): Wiley, 2020, roč. 39, č. 18, s. 1-15. ISSN 0261-4189. Dostupné z: https://dx.doi.org/10.15252/embj.2019103932.

KOTRBOVÁ, Anna, Petra OVESNÁ, Tomáš GYBEĽ, Tomasz Witold RADASZKIEWICZ, Markéta BEDNAŘÍKOVÁ, Jitka HAUSNEROVÁ, Eva JANDÁKOVÁ, Luboš MINÁŘ, Igor CRHA, Vít WEINBERGER, Ludek ZAVESKY, Vítězslav BRYJA a Vendula POSPÍCHALOVÁ. WNT signaling inducing activity in ascites predicts poor outcome in ovarian cancer. Theranostics. Lake Haven: Ivyspring International Publisher, 2020, roč. 10, č. 2, s. 537-552. ISSN 1838-7640. Dostupné z: https://dx.doi.org/10.7150/thno.37423.

RADASZKIEWICZ, Katarzyna Anna, Deborah BECKEROVÁ, Lucie WOLOSZCZUKOVÁ, Tomasz Witold RADASZKIEWICZ, Petra LESÁKOVÁ, Olga VONDÁLOVÁ BLANÁŘOVÁ, Lukáš KUBALA, Petr HUMPOLÍČEK a Jiří PACHERNÍK. 12-O-Tetradecanoylphor bol-13-acetate increases cardiomyogenesis through PKC/ERK signaling. Scientific reports. Berlin: Nature Research, 2020, roč. 10, č. 1, s. 1-13. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-020-73074-4.

CHIRACKAL MANAVALAN, Anil Paul, Květa PILAŘOVÁ, Michael KLUGE, Koen BARTHOLOMEEUSEN, Michal RÁJECKÝ, Jan OPPELT, PrashantKumar KHIRSARIYA, Kamil PARUCH, Lumír KREJČÍ, Caroline C FRIEDEL a Dalibor BLAŽEK. CDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes. EMBO reports. Hoboken: Wiley-Blackwell, 2019, roč. 20, č. 9, s. 1-29. ISSN 1469-221X. Dostupné z: https://dx.doi.org/10.15252/embr.201847592.

HANÁKOVÁ, Kateřina, Ondřej BERNATÍK, Marek KRAVEC, Miroslav MICKA, Jitender KUMAR, Jakub HARNOŠ, Petra OVESNÁ, Petra PACLÍKOVÁ, Matěj RÁDSETOULAL, David POTĚŠIL, Konstantinos TRIPSIANES, Lukáš ČAJÁNEK, Zbyněk ZDRÁHAL a Vítězslav BRYJA. Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs. Cell Communication and Signaling. 2019, roč. 17, č. 1, s. 1-21. ISSN 1478-811X. Dostupné z: https://dx.doi.org/10.1186/s12964-019-0470-z.

HARNOŠ, Jakub, M.C.A. CANIZAL, Miroslav JURÁSEK, Jitender KUMAR, Cornelia HOLLER, Alexandra SCHAMBONY, Kateřina HANÁKOVÁ, Ondřej BERNATÍK, Zbyněk ZDRÁHAL, Kristína GÖMÖRYOVÁ, Tomáš GYBEĽ, Tomasz Witold RADASZKIEWICZ, Marek KRAVEC, Lukáš TRANTÍREK, Jan RYNEŠ, Zankruti DAVE, Ana Iris FERNANDEZ-LLAMAZARES, Robert VÁCHA, Konstantinos TRIPSIANES, Carsten HOFFMANN a Vítězslav BRYJA. Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. Nature Communications. London: Nature Publishing Group, 2019, roč. 10, APR 18 2019, s. 1-18. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-019-09651-7.

PABIS, M., L. CORSINI, M. VINCENDEAU, Konstantinos TRIPSIANES, T.J. GIBSON, R. BRACK-WERNER a M. SATTLER. Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors. Nucleic acids research. Oxford: Oxford University Press, 2019, roč. 47, č. 9, s. 4859-4871. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkz185.

TRIPSIANES, Konstantinos, U. SCHUTZ, L. EMMANOUILIDIS, G. GEMMECKER a M. SATTLER. Selective isotope labeling for NMR structure determination of proteins in complex with unlabeled ligands. Journal of biomolecular NMR. Dordrecht: Springer, 2019, roč. 73, 3-4, s. 183-189. ISSN 0925-2738. Dostupné z: https://dx.doi.org/10.1007/s10858-019-00241-9.

TRIPSIANES, Konstantinos. 4D-CHAINS/autoNOE-Rosetta, an automatedpipeline for rapid NMR structure determination. In EUROISMAR 2019. 2019.

EVANGELIDIS, Thomas, S. NERLI, Jiří NOVÁČEK, A.E. BRERETON, P.A. KARPLUS, R.R. DOTAS, V. VENDITTI, N.G. SGOURAKIS a Konstantinos TRIPSIANES. Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra. Nature Communications. London: Nature Publishing Group, 2018, roč. 9, JAN, s. 384-396. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-017-02592-z.

SUPEKAR, S., Anna PAPAGEORGIOU, G. GEMMECKER, R. PELTZER, M.P. JOHANSSON, Konstantinos TRIPSIANES, M. SATTLER a V.R.I. KAILA. Conformational Selection of Dimethylarginine Recognition by the Survival Motor Neuron Tudor Domain. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2018, roč. 57, č. 2, s. 486-490. ISSN 1433-7851. Dostupné z: https://dx.doi.org/10.1002/anie.201708233.

MARCOS, E., T.M. CHIDYAUSIKU, A.C. MCSHAN, Thomas EVANGELIDIS, S. NERLI, L. CARTER, L.G. NIVON, A. DAVIS, G. OBERDORFER, Konstantinos TRIPSIANES, N.G. SGOURAKIS a D. BAKER. De novo design of a non-local beta-sheet protein with high stability and accuracy. NATURE STRUCTURAL & MOLECULAR BIOLOGY. NEW YORK: NATURE PUBLISHING GROUP, 2018, roč. 25, č. 11, s. 1028-1037. ISSN 1545-9993. Dostupné z: https://dx.doi.org/10.1038/s41594-018-0141-6.

CAMARGO, D.C.R., D. GARG, K. BUDAY, A. FRANKO, A.R. CAMARGO, F. SCHMIDT, S.J. COX, S. SULADZE, M. HASLBECK, Y.G. MIDEKSA, G. GEMMECKER, M. AICHLER, G. METTENLEITER, M. SCHULZ, A.K. WALCH, M.H. DE ANGELIS, M.J. FEIGE, C.A. SIERRA, M. CONRAD, Konstantinos TRIPSIANES, A. RAMAMOORTHY a B. REIF. hIAPP forms toxic oligomers in plasma. Chemical communications. Cambridge: Royal Society of Chemistry, 2018, roč. 54, č. 43, s. 5426-5429. ISSN 1359-7345. Dostupné z: https://dx.doi.org/10.1039/c8cc03097a.

BOTOU, M., P. LAZOU, K. PAPAKOSTAS, G. LAMBRINIDIS, Thomas EVANGELIDIS, E. MIKROS a S. FRILLINGOS. Insight on specificity of uracil permeases of the NAT/NCS2 family from analysis of the transporter encoded in the pyrimidine utilization operon of Escherichia coli. Molecular Microbiology. HOBOKEN: WILEY, 2018, roč. 108, č. 2, s. 204-219. ISSN 0950-382X. Dostupné z: https://dx.doi.org/10.1111/mmi.13931.

EMMANOUILIDIS, L., U. SCHUTZ, Konstantinos TRIPSIANES, T. MADL, J. RADKE, R. RUCKTASCHEL, M. WILMANNS, W. SCHLIEBS, R. ERDMANN a M. SATTLER. Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19. Nature Communications. London: Nature Publishing Group, 2017, roč. 8, MAR, s. 14635-14647. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/ncomms14635.

DAWIDOWSKI, M., L. EMMANOUILIDIS, V.C. KALEL, Konstantinos TRIPSIANES, K. SCHORPP, K. HADIAN, M. KAISER, P. MASER, M. KOLONKO, S. TANGHE, A. RODRIGUEZ, W. SCHLIEBS, R. ERDMANN, M. SATTLER a G.M. POPOWICZ. Inhibitors of PEX14 disrupt protein import into glycosomes and kill Trypanosoma parasites. Science. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE, 2017, roč. 355, č. 6332, s. 1416-1420. ISSN 0036-8075. Dostupné z: https://dx.doi.org/10.1126/science.aal1807.

CAMARGO, D.C.R., Konstantinos TRIPSIANES, K. BUDAY, A. FRANKO, C. GOBL, C. HARTLMULLER, R. SARKAR, M. AICHLER, G. METTENLEITER, M. SCHULZ, A. BODDRICH, C. ERCK, H. MARTENS, A.K. WALCH, T. MADL, E.E. WANKER, M. CONRAD, M.H. DE ANGELIS a B. REIF. The redox environment triggers conformational changes and aggregation of hIAPP in Type II Diabetes. Scientific reports. LONDON: NATURE PUBLISHING GROUP, 2017, roč. 7, MAR, s. 44041-44051. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/srep44041.

PEKAŘÍK, Vladimír, Marie PEŠKOVÁ, R. GURAN, Jiří NOVÁČEK, Z. HEGER, Konstantinos TRIPSIANES, Jitender KUMAR a V. ADAM. Visualization of stable ferritin complexes with palladium, rhodium and iridium nanoparticles detected by their catalytic activity in native polyacrylamide gels. Dalton Transactions. Cambridge: Royal Society of Chemistry, 2017, roč. 46, č. 40, s. 13690-13694. ISSN 1477-9226. Dostupné z: https://dx.doi.org/10.1039/C7DT02818K.

VALUCHOVÁ, Soňa, Jaroslav FULNEČEK, Alexander PETROV, Konstantinos TRIPSIANES a Karel ŘÍHA. A rapid method for detecting protein-nucleic acid interactions by protein induced fluorescence enhancement. Scientific Reports. LONDON: NATURE PUBLISHING GROUP, 2016, roč. 6, December, s. nestránkováno, 10 s. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/srep39653.

ZLOBINA, Maria, Ondrej ŠEDO, Ming-Yuan CHOU, Lucia SLEPÁNKOVÁ a Peter LUKAVSKY. Efficient large-scale preparation and purification of short single-stranded RNA oligonucleotides. Biotechniques. New York: Biotechniques Office, 2016, roč. 60, č. 2, s. 75-83. ISSN 0736-6205. Dostupné z: https://dx.doi.org/10.2144/000114383.

PAPAGEORGIOU, Anna, Adam PANAGIOTIS S., Philemon STAVROS, George NOUNESIS, Rob MEIJERS, Kyriacos PETRATOS a Constantinos E. VORGIAS. HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses. Extremophiles. Tokyo: Springer Japan KK, 2016, roč. 20, č. 5, s. 695-709. ISSN 1431-0651. Dostupné z: https://dx.doi.org/10.1007/s00792-016-0859-1.

BRÁZDOVÁ, Marie, Vlastimil TICHÝ, Robert HELMA, Pavla BAŽANTOVÁ, Alena POLÁŠKOVÁ, Aneta KREJČÍ, Marek PETR, Lucie NAVRÁTILOVÁ, Olga TICHÁ, Karel NEJEDLÝ, Martin L BENNINK, Vinod SUBRAMANIAM, Zuzana BÁBKOVÁ, Tomáš MARTÍNEK, Matej LEXA a Matej ADÁMIK. p53 Specifically Binds Triplex DNA In Vitro and in Cells. PLOS ONE. Public Library of Science, 2016, roč. 11, č. 12, s. "e0167439", 25 s. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0167439.

CAMARGO, Diana C. Rodrigues, Konstantinos TRIPSIANES, Tobias G. KAPP, Joaquim MENDES, Jasmin SCHUBERT, Burghard CORDES a Bernd REIF. Cloning, expression and purification of the human Islet Amyloid Polypeptide (hIAPP) from Escherichia coli. Protein Expression and Purification. SAN DIEGO: Elsevier, 2015, roč. 106, Feb, s. 49-56. ISSN 1046-5928. Dostupné z: https://dx.doi.org/10.1016/j.pep.2014.10.012.

RABBANI, Gulam, Ejaz AHMAD, Mohsin Vahid KHAN, Mohd. Tashfeen ASHRAF, Rajiv BHAT a Rizwan Hasan KHAN. Impact of structural stability of cold adapted Candida antarctica lipase B (CaLB): in relation to pH, chemical and thermal denaturation. RSC Advances. Cambridge: Royal Society of Chemistry, 2015, roč. 5, č. 26, s. 20115-20131. ISSN 2046-2069. Dostupné z: https://dx.doi.org/10.1039/c4ra17093h.

TRIPSIANES, Konstantinos, A. FRIBERG, Ch. BARRANDON, M. BROOKS, H. VAN TILBEURGH, B. SERAPHIN a Michael SATTLER. A Novel Protein-Protein Interaction in the RES (REtention and Splicing) Complex. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2014, roč. 289, č. 41, s. 28640-28650. ISSN 0021-9258. Dostupné z: https://dx.doi.org/10.1074/jbc.M114.592311.

ZHANG, Zaiyong, Justin PORTER, Konstantinos TRIPSIANES a Oliver F. LANGE. Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta. Journal of Biomolecular NMR. Dordrecht: Springer Netherlands, 2014, roč. 59, č. 3, s. 135-145. ISSN 0925-2738. Dostupné z: https://dx.doi.org/10.1007/s10858-014-9832-4.

TRIPSIANES, Konstantinos, Nam K. CHU, Anders FRIBERG, Michael SATTLER a Christian F. W. BECKER. Studying Weak and Dynamic Interactions of Posttranslationally Modified Proteins using Expressed Protein Ligation. ACS CHEMICAL BIOLOGY. Washington D.C.: AMER CHEMICAL SOC, 2014, roč. 9, č. 2, s. 347-352. ISSN 1554-8929. Dostupné z: https://dx.doi.org/10.1021/cb400723j.