Publication Records

SMOLKO, Martin, Anna VYHLÍDALOVÁ KOTRBOVÁ, Anežka CELÁ, Jan KOTOUČEK, Karel SOUČEK, Vítězslav BRYJA and Vendula HLAVÁČKOVÁ POSPÍCHALOVÁ. CRISPR CAS9 ENGINEERED TETRASPANIN DEFICIENT CELL LINES FOR THE ANALYSIS OF EXTRACELLULAR VESICLES. In 12th International Conference Analytical Cytometry. 2023.

PAPAGEORGIOU, Anna, Michaela POSPÍŠILOVÁ, Jakub CIBULKA, Raghib ASHRAF, Christopher WAUDBY, Pavel KADEŘÁVEK, Volha MAROZ, Karel KUBÍČEK, Zbyněk PROKOP, Lumír KREJČÍ and Konstantinos TRIPSIANES. Recognition and coacervation of G-quadruplexes by a multifunctional disordered region in RECQ4 helicase. Nature Communications. Berlin: Nature, 2023, vol. 14, No 1, p. 1-19. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-42503-z.

VYMETAL, Jiri, Katerina MERTOVA, Kristyna BOUSOVA, Josef SULC, Konstantinos TRIPSIANES and Jiri VONDRASEK. Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x-ray reference structures as a prediction benchmark. Proteins: Structure, Function, and Bioinformatics. 2022, vol. 90, No 12, p. 2067-2079. ISSN 0887-3585. Available from: https://dx.doi.org/10.1002/prot.26398.

YPERMAN, K., Anna PAPAGEORGIOU, R. MERCERON, S. DE MUNCK, Y. BLOCH, D. EECKHOUT, Q.H. JIANG, P. TACK, R. GRIGORYAN, Thomas EVANGELIDIS, J. VAN LEENE, L. VINCZE, P. VANDENABEELE, F. VANHAECKE, M. POTOCKY, G. DE JAEGER, S.N. SAVVIDES, Konstantinos TRIPSIANES, R. PLESKOT and D. VAN DAMME. Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding. Nature Communications. London: Nature Publishing Group, 2021, vol. 12, No 1, p. "3050", 11 pp. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-021-23314-6.

JURÁSEK, Miroslav, Jitender KUMAR, Petra PACLÍKOVÁ, Alka Kumari JADAUN, Konstantinos TRIPSIANES, Vítězslav BRYJA and Robert VÁCHA. Phosphorylation-induced changes in the PDZ domain of Dishevelled 3. Scientific Reports. NATURE PUBLISHING GROUP, 2021, vol. 11, No 1, p. "1484", 14 pp. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-79398-5.

BOUSOVA, K., L. BEDNAROVA, M. ZOUHAROVA, V. VETYSKOVA, K. POSTULKOVA, K. HOFBAUEROVA, O. PETRVALSKA, O. VANEK, Konstantinos TRIPSIANES and J. VONDRASEK. The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization. Protein Science. HOBOKEN: JOHN WILEY & SONS INC, 2021, vol. 30, No 8, p. 1653-1666. ISSN 0961-8368. Available from: https://dx.doi.org/10.1002/pro.4107.

BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS and Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.

EVANGELIDIS, Thomas and Konstantinos TRIPSIANES. 4D-CHAINS. 2021.

HUBLIKAR, M., V. KADU, Jitender KUMAR, D. RAUT, S. SHIRAME, P. MAKAM and R. BHOSALE. (E)-2-(2-Allylidenehydrazinyl)thiazole derivatives: Design, green synthesis, in silico and in vitro antimycobacterial and radical scavenging studies. Archiv der Pharmazie. Weinheim: Verlag Chemie, 2020, vol. 353, No 7, p. 2000003-2000014. ISSN 0365-6233. Available from: https://dx.doi.org/10.1002/ardp.202000003.

BOSÁKOVÁ, Michaela, Sara POOVAKULATHU ABRAHAM, Alexandru NITĂ, Eva HRUBA, Marcela BUCHTOVA, S. Paige TAYLOR, Ivan DURAN, Jorge MARTIN, Kateřina SVOZILOVÁ, Tomáš BÁRTA, Miroslav VAŘECHA, Lukáš BÁLEK, Jiri KOHOUTEK, Tomasz Witold RADASZKIEWICZ, Ganesh V. PUSAPATI, Vítězslav BRYJA, Eric T. RUSH, Isabelle THIFFAULT, Deborah A. NICKERSON, Michael J. BAMSHAD, Rajat ROHATGI, Daniel H. COHN, Deborah KRAKOW and Pavel KREJČÍ. Mutations in GRK2 cause Jeune syndrome by impairing Hedgehog and canonical Wnt signaling. EMBO MOLECULAR MEDICINE. HOBOKEN: WILEY-BLACKWELL, 2020, vol. 12, No 11, p. 1-20. ISSN 1757-4676. Available from: https://dx.doi.org/10.15252/emmm.201911739.

SPIT, Maureen, Nicola FENDERICO, Ingrid JORDENS, Tomasz Witold RADASZKIEWICZ, Rik G. H. LINDEBOOM, Jeroen M. BUGTER, Alba CRISTOBAL, Lars OOTES, Max VAN OSCH, Eline JANSSEN, Kim E. BOONEKAMP, Kateřina HANÁKOVÁ, David POTĚŠIL, Zbyněk ZDRÁHAL, Sylvia F. BOJ, Jan Paul MEDEMA, Vítězslav BRYJA, Bon-Kyoung KOO, Michiel VERMEULEN and Madelon M. MAURICE. RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. EMBO Journal. Hoboken (USA): Wiley, 2020, vol. 39, No 18, p. 1-15. ISSN 0261-4189. Available from: https://dx.doi.org/10.15252/embj.2019103932.

KOTRBOVÁ, Anna, Petra OVESNÁ, Tomáš GYBEĽ, Tomasz Witold RADASZKIEWICZ, Markéta BEDNAŘÍKOVÁ, Jitka HAUSNEROVÁ, Eva JANDÁKOVÁ, Luboš MINÁŘ, Igor CRHA, Vít WEINBERGER, Ludek ZAVESKY, Vítězslav BRYJA and Vendula POSPÍCHALOVÁ. WNT signaling inducing activity in ascites predicts poor outcome in ovarian cancer. Theranostics. Lake Haven: Ivyspring International Publisher, 2020, vol. 10, No 2, p. 537-552. ISSN 1838-7640. Available from: https://dx.doi.org/10.7150/thno.37423.

RADASZKIEWICZ, Katarzyna Anna, Deborah BECKEROVÁ, Lucie WOLOSZCZUKOVÁ, Tomasz Witold RADASZKIEWICZ, Petra LESÁKOVÁ, Olga VONDÁLOVÁ BLANÁŘOVÁ, Lukáš KUBALA, Petr HUMPOLÍČEK and Jiří PACHERNÍK. 12-O-Tetradecanoylphor bol-13-acetate increases cardiomyogenesis through PKC/ERK signaling. Scientific reports. Berlin: Nature Research, 2020, vol. 10, No 1, p. 1-13. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-73074-4.

CHIRACKAL MANAVALAN, Anil Paul, Květa PILAŘOVÁ, Michael KLUGE, Koen BARTHOLOMEEUSEN, Michal RÁJECKÝ, Jan OPPELT, PrashantKumar KHIRSARIYA, Kamil PARUCH, Lumír KREJČÍ, Caroline C FRIEDEL and Dalibor BLAŽEK. CDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes. EMBO reports. Hoboken: Wiley-Blackwell, 2019, vol. 20, No 9, p. 1-29. ISSN 1469-221X. Available from: https://dx.doi.org/10.15252/embr.201847592.

HANÁKOVÁ, Kateřina, Ondřej BERNATÍK, Marek KRAVEC, Miroslav MICKA, Jitender KUMAR, Jakub HARNOŠ, Petra OVESNÁ, Petra PACLÍKOVÁ, Matěj RÁDSETOULAL, David POTĚŠIL, Konstantinos TRIPSIANES, Lukáš ČAJÁNEK, Zbyněk ZDRÁHAL and Vítězslav BRYJA. Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs. Cell Communication and Signaling. 2019, vol. 17, No 1, p. 1-21. ISSN 1478-811X. Available from: https://dx.doi.org/10.1186/s12964-019-0470-z.

HARNOŠ, Jakub, M.C.A. CANIZAL, Miroslav JURÁSEK, Jitender KUMAR, Cornelia HOLLER, Alexandra SCHAMBONY, Kateřina HANÁKOVÁ, Ondřej BERNATÍK, Zbyněk ZDRÁHAL, Kristína GÖMÖRYOVÁ, Tomáš GYBEĽ, Tomasz Witold RADASZKIEWICZ, Marek KRAVEC, Lukáš TRANTÍREK, Jan RYNEŠ, Zankruti DAVE, Ana Iris FERNANDEZ-LLAMAZARES, Robert VÁCHA, Konstantinos TRIPSIANES, Carsten HOFFMANN and Vítězslav BRYJA. Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. Nature Communications. London: Nature Publishing Group, 2019, vol. 10, APR 18 2019, p. 1-18. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-019-09651-7.

PABIS, M., L. CORSINI, M. VINCENDEAU, Konstantinos TRIPSIANES, T.J. GIBSON, R. BRACK-WERNER and M. SATTLER. Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, No 9, p. 4859-4871. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz185.

TRIPSIANES, Konstantinos, U. SCHUTZ, L. EMMANOUILIDIS, G. GEMMECKER and M. SATTLER. Selective isotope labeling for NMR structure determination of proteins in complex with unlabeled ligands. Journal of biomolecular NMR. Dordrecht: Springer, 2019, vol. 73, 3-4, p. 183-189. ISSN 0925-2738. Available from: https://dx.doi.org/10.1007/s10858-019-00241-9.

TRIPSIANES, Konstantinos. 4D-CHAINS/autoNOE-Rosetta, an automatedpipeline for rapid NMR structure determination. In EUROISMAR 2019. 2019.

EVANGELIDIS, Thomas, S. NERLI, Jiří NOVÁČEK, A.E. BRERETON, P.A. KARPLUS, R.R. DOTAS, V. VENDITTI, N.G. SGOURAKIS and Konstantinos TRIPSIANES. Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra. Nature Communications. London: Nature Publishing Group, 2018, vol. 9, JAN, p. 384-396. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-017-02592-z.

SUPEKAR, S., Anna PAPAGEORGIOU, G. GEMMECKER, R. PELTZER, M.P. JOHANSSON, Konstantinos TRIPSIANES, M. SATTLER and V.R.I. KAILA. Conformational Selection of Dimethylarginine Recognition by the Survival Motor Neuron Tudor Domain. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2018, vol. 57, No 2, p. 486-490. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.201708233.

MARCOS, E., T.M. CHIDYAUSIKU, A.C. MCSHAN, Thomas EVANGELIDIS, S. NERLI, L. CARTER, L.G. NIVON, A. DAVIS, G. OBERDORFER, Konstantinos TRIPSIANES, N.G. SGOURAKIS and D. BAKER. De novo design of a non-local beta-sheet protein with high stability and accuracy. NATURE STRUCTURAL & MOLECULAR BIOLOGY. NEW YORK: NATURE PUBLISHING GROUP, 2018, vol. 25, No 11, p. 1028-1037. ISSN 1545-9993. Available from: https://dx.doi.org/10.1038/s41594-018-0141-6.

CAMARGO, D.C.R., D. GARG, K. BUDAY, A. FRANKO, A.R. CAMARGO, F. SCHMIDT, S.J. COX, S. SULADZE, M. HASLBECK, Y.G. MIDEKSA, G. GEMMECKER, M. AICHLER, G. METTENLEITER, M. SCHULZ, A.K. WALCH, M.H. DE ANGELIS, M.J. FEIGE, C.A. SIERRA, M. CONRAD, Konstantinos TRIPSIANES, A. RAMAMOORTHY and B. REIF. hIAPP forms toxic oligomers in plasma. Chemical communications. Cambridge: Royal Society of Chemistry, 2018, vol. 54, No 43, p. 5426-5429. ISSN 1359-7345. Available from: https://dx.doi.org/10.1039/c8cc03097a.

BOTOU, M., P. LAZOU, K. PAPAKOSTAS, G. LAMBRINIDIS, Thomas EVANGELIDIS, E. MIKROS and S. FRILLINGOS. Insight on specificity of uracil permeases of the NAT/NCS2 family from analysis of the transporter encoded in the pyrimidine utilization operon of Escherichia coli. Molecular Microbiology. HOBOKEN: WILEY, 2018, vol. 108, No 2, p. 204-219. ISSN 0950-382X. Available from: https://dx.doi.org/10.1111/mmi.13931.

EMMANOUILIDIS, L., U. SCHUTZ, Konstantinos TRIPSIANES, T. MADL, J. RADKE, R. RUCKTASCHEL, M. WILMANNS, W. SCHLIEBS, R. ERDMANN and M. SATTLER. Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19. Nature Communications. London: Nature Publishing Group, 2017, vol. 8, MAR, p. 14635-14647. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/ncomms14635.

DAWIDOWSKI, M., L. EMMANOUILIDIS, V.C. KALEL, Konstantinos TRIPSIANES, K. SCHORPP, K. HADIAN, M. KAISER, P. MASER, M. KOLONKO, S. TANGHE, A. RODRIGUEZ, W. SCHLIEBS, R. ERDMANN, M. SATTLER and G.M. POPOWICZ. Inhibitors of PEX14 disrupt protein import into glycosomes and kill Trypanosoma parasites. Science. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE, 2017, vol. 355, No 6332, p. 1416-1420. ISSN 0036-8075. Available from: https://dx.doi.org/10.1126/science.aal1807.

CAMARGO, D.C.R., Konstantinos TRIPSIANES, K. BUDAY, A. FRANKO, C. GOBL, C. HARTLMULLER, R. SARKAR, M. AICHLER, G. METTENLEITER, M. SCHULZ, A. BODDRICH, C. ERCK, H. MARTENS, A.K. WALCH, T. MADL, E.E. WANKER, M. CONRAD, M.H. DE ANGELIS and B. REIF. The redox environment triggers conformational changes and aggregation of hIAPP in Type II Diabetes. Scientific reports. LONDON: NATURE PUBLISHING GROUP, 2017, vol. 7, MAR, p. 44041-44051. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/srep44041.

PEKAŘÍK, Vladimír, Marie PEŠKOVÁ, R. GURAN, Jiří NOVÁČEK, Z. HEGER, Konstantinos TRIPSIANES, Jitender KUMAR and V. ADAM. Visualization of stable ferritin complexes with palladium, rhodium and iridium nanoparticles detected by their catalytic activity in native polyacrylamide gels. Dalton Transactions. Cambridge: Royal Society of Chemistry, 2017, vol. 46, No 40, p. 13690-13694. ISSN 1477-9226. Available from: https://dx.doi.org/10.1039/C7DT02818K.

VALUCHOVÁ, Soňa, Jaroslav FULNEČEK, Alexander PETROV, Konstantinos TRIPSIANES and Karel ŘÍHA. A rapid method for detecting protein-nucleic acid interactions by protein induced fluorescence enhancement. Scientific Reports. LONDON: NATURE PUBLISHING GROUP, 2016, vol. 6, December, p. nestránkováno, 10 pp. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/srep39653.

ZLOBINA, Maria, Ondrej ŠEDO, Ming-Yuan CHOU, Lucia SLEPÁNKOVÁ and Peter LUKAVSKY. Efficient large-scale preparation and purification of short single-stranded RNA oligonucleotides. Biotechniques. New York: Biotechniques Office, 2016, vol. 60, No 2, p. 75-83. ISSN 0736-6205. Available from: https://dx.doi.org/10.2144/000114383.

PAPAGEORGIOU, Anna, Adam PANAGIOTIS S., Philemon STAVROS, George NOUNESIS, Rob MEIJERS, Kyriacos PETRATOS and Constantinos E. VORGIAS. HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses. Extremophiles. Tokyo: Springer Japan KK, 2016, vol. 20, No 5, p. 695-709. ISSN 1431-0651. Available from: https://dx.doi.org/10.1007/s00792-016-0859-1.

BRÁZDOVÁ, Marie, Vlastimil TICHÝ, Robert HELMA, Pavla BAŽANTOVÁ, Alena POLÁŠKOVÁ, Aneta KREJČÍ, Marek PETR, Lucie NAVRÁTILOVÁ, Olga TICHÁ, Karel NEJEDLÝ, Martin L BENNINK, Vinod SUBRAMANIAM, Zuzana BÁBKOVÁ, Tomáš MARTÍNEK, Matej LEXA and Matej ADÁMIK. p53 Specifically Binds Triplex DNA In Vitro and in Cells. PLOS ONE. Public Library of Science, 2016, vol. 11, No 12, p. "e0167439", 25 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0167439.

CAMARGO, Diana C. Rodrigues, Konstantinos TRIPSIANES, Tobias G. KAPP, Joaquim MENDES, Jasmin SCHUBERT, Burghard CORDES and Bernd REIF. Cloning, expression and purification of the human Islet Amyloid Polypeptide (hIAPP) from Escherichia coli. Protein Expression and Purification. SAN DIEGO: Elsevier, 2015, vol. 106, Feb, p. 49-56. ISSN 1046-5928. Available from: https://dx.doi.org/10.1016/j.pep.2014.10.012.

RABBANI, Gulam, Ejaz AHMAD, Mohsin Vahid KHAN, Mohd. Tashfeen ASHRAF, Rajiv BHAT and Rizwan Hasan KHAN. Impact of structural stability of cold adapted Candida antarctica lipase B (CaLB): in relation to pH, chemical and thermal denaturation. RSC Advances. Cambridge: Royal Society of Chemistry, 2015, vol. 5, No 26, p. 20115-20131. ISSN 2046-2069. Available from: https://dx.doi.org/10.1039/c4ra17093h.

TRIPSIANES, Konstantinos, A. FRIBERG, Ch. BARRANDON, M. BROOKS, H. VAN TILBEURGH, B. SERAPHIN and Michael SATTLER. A Novel Protein-Protein Interaction in the RES (REtention and Splicing) Complex. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2014, vol. 289, No 41, p. 28640-28650. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.M114.592311.

ZHANG, Zaiyong, Justin PORTER, Konstantinos TRIPSIANES and Oliver F. LANGE. Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta. Journal of Biomolecular NMR. Dordrecht: Springer Netherlands, 2014, vol. 59, No 3, p. 135-145. ISSN 0925-2738. Available from: https://dx.doi.org/10.1007/s10858-014-9832-4.

TRIPSIANES, Konstantinos, Nam K. CHU, Anders FRIBERG, Michael SATTLER and Christian F. W. BECKER. Studying Weak and Dynamic Interactions of Posttranslationally Modified Proteins using Expressed Protein Ligation. ACS CHEMICAL BIOLOGY. Washington D.C.: AMER CHEMICAL SOC, 2014, vol. 9, No 2, p. 347-352. ISSN 1554-8929. Available from: https://dx.doi.org/10.1021/cb400723j.