Publication Records

HRADISKÁ, Helena, Martin KUREČKA, Jan BERÁNEK, Guglielmo TEDESCHI, Vladimír VIŠŇOVSKÝ, Aleš KŘENEK and Vojtěch SPIWOK. Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics. The Journal of Physical Chemistry B. 2024. ISSN 1520-6106. Available from: https://dx.doi.org/10.1021/acs.jpcb.3c05669.

RUMAN, Ádám, Martin DRAŠAR, Lukáš SADLEK, Shanchieh Jay YANG and Pavel ČELEDA. Adversary Tactic Driven Scenario and Terrain Generation with Partial Infrastructure Specification. Online. In The 19th International Conference on Availability, Reliability and Security (ARES 2024) [to appear]. ACM, 2024, 11 pp. Available from: https://dx.doi.org/10.1145/3664476.3664523.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome. bioRxiv, 2024.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, Neuveden, May 15, p. 1-5. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkae397.

HÁJEK, Adam and Aleš HORÁK. CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task. IEEE ACCESS. UNITED STATES: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2024, vol. 2024, No 12, p. 34570-34581. ISSN 2169-3536. Available from: https://dx.doi.org/10.1109/ACCESS.2024.3371689.

SVOBODA, Tomáš and Adrián ROŠINEC. Data workflows at CEITEC MU. In Setkání OS metodiků MU. 2024.

ANTOL, Matej, Jiří MAREK, Michaela CAPANDOVÁ, Jaroslav JURÁČEK and Luděk MATYSKA. EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data. arXiv, 2024, 2 pp.

VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL and Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. PLOS ONE. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2024, vol. 6, No 19, p. 1-13. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0302269.

DAUBNER, Lukáš, Sofija MAKSOVIĆ, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ and Tomáš SEDLÁČEK. Forensic-Ready Analysis Suite: A Tool Support for Forensic-Ready Software Systems Design. Online. In International Conference on Research Challenges in Information Science (RCIS 2024). Neuveden: Springer, 2024, p. 47–55. ISBN 978-3-031-59467-0. Available from: https://dx.doi.org/10.1007/978-3-031-59468-7_6.

DAUBNER, Lukáš, Sofija MAKSOVIĆ and Tomáš SEDLÁČEK. FREAS: Forensic-Ready Analysis Suite. 2024.

JEANSON, Francis, Spencer J GIBSON, Pinar ALPER, Alexander BERNIER, J Patrick WOOLLEY, Daniel MIETCHEN, Andrzej STRUG, Regina BECKER, Pim KAMERLING, Maria del Carmen Sanchez GONZALEZ, Nancy MAH, Ann NOVAKOWSKI, Mark D WILKINSON, Oussama Mohammed BENHAMED, Annalisa LANDI, Georg Philip KROG, Heimo MÜLLER, Umar RIAZ, Colin VEAL, Petr HOLUB, Esther VAN ENCKEVORT and Anthony J BROOKES. Getting your DUCs in a row - standardising the representation of Digital Use Conditions. SCIENTIFIC DATA. London: NATURE PORTFOLIO, 2024, vol. 11, No 1, p. 1-10. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-024-03280-6.

SVOBODA, Tomáš, Adrián ROŠINEC and Ondřej FILIP. Hands-on experience with big data transfer via iRODS and Onedata. In e-INFRA CZ CONFERENCE 2024. 2024.

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ, David BEDNÁŘ and Karel BERKA. ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic Acids Research. Oxford University Press, 2024, vol. 52, D1, p. "D413"-"D418", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad1012.

KUESS, Lukas, Ernst PAUNZEN, Nikola FALTOVÁ, Daniel JADLOVSKÝ, Matúš LABAJ, Marko MESARČ, Prapti MONDAL, Michal PRIŠEGEN, Tahereh RAMEZANI, Johana SUPÍKOVÁ, Kateřina SVAČINKOVÁ, Michaela VÍTKOVÁ, Caiyun XIA, Klaus BERNHARD and Stefan HÜMMERICH. Chemically peculiar stars on the pre-main sequence. Astronomy & Astrophysics. EDP Sciences, 2024, 25 pp. ISSN 0004-6361.

KACOVÁ, Radoslava, Zdenka DUDOVÁ, Tomáš HOUFEK, Radovan TOMÁŠIK and Roman HRSTKA. Integration, Cataloguing and FAIRification of Biobank and Clinical Data. In Europe Biobank Week Congress 2024. 2024.

ROŠINEC, Adrián. Introduction to the new generation EGI container execution platform. In EGI Webinar programme 2024. 2024. Available from: https://dx.doi.org/10.5281/zenodo.10566759.

HOLUB, Petr. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology. In 20th European Congress on Digital Pathology 2024 (ECDP2024). 2024.

SVOBODA, Tomáš. MAFILDB - technická realizace (MAFILDB - technical implementation). In FAIR data pro uživatele CF MAFIL. 2024.

ROŠINEC, Adrián and Tomáš SVOBODA. Research Data Management at CEITEC MU. In Open Science Workshop 2024. 2024.

DRAŠAR, Martin, Ádám RUMAN, Pavel ČELEDA and Yang SCHANCHIEH. The Road Towards Autonomous Cybersecurity Agents: Remedies for Simulation Environments. Online. In Sokratis Katsikas et al. ESORICS 2023: Computer Security. ESORICS 2023 International Workshops. Neuveden: Springer Nature Switzerland AG, 2024, p. 738-749. ISBN 978-3-031-54128-5. Available from: https://dx.doi.org/10.1007/978-3-031-54129-2_43.

WITTNER, Rudolf, Petr HOLUB, Cecilia MASCIA, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Clare ALLOCCA, Fay BETSOU, Tony BURDETT, Ibon CANCIO, Adriane CHAPMAN, Martin CHAPMAN, Mélanie COURTOT, Vasa CURCIN, Johann EDER, Mark ELLIOT, Katrina EXTER, Carole GOBLE, Martin GOLEBIEWSKI, Bron KISLER, Andreas KREMER, Simone LEO, Sheng LIN-GIBSON, Anna MARSANO, Marco MATTAVELLI, Josh MOORE, Hiroki NAKAE, Isabelle PERSEIL, Ayat SALMAN, James SLUKA, Stian SOILAND-REYES, Caterina STRAMBIO-DE-CASTILLIA, Michael SUSSMAN, Jason R SWEDLOW, Kurt ZATLOUKAL and Jörg GEIGER. Toward a common standard for data and specimen provenance in life sciences. LEARNING HEALTH SYSTEMS. UNITED STATES: WILEY, 2024, vol. 8, No 1, p. 1-9. ISSN 2379-6146. Available from: https://dx.doi.org/10.1002/lrh2.10365.

DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA and Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, p. 522-538. ISBN 978-3-031-34559-3. Available from: https://dx.doi.org/10.1007/978-3-031-34560-9_31.

DAUBNER, Lukáš, Matulevičius RAIMUNDAS and Barbora BÜHNOVÁ. A Model of Qualitative Factors in Forensic-Ready Software Systems. Online. In Research Challenges in Information Science: Information Science and the Connected World. Cham: Springer Nature Switzerland, 2023, p. 308-324. ISBN 978-3-031-33079-7. Available from: https://dx.doi.org/10.1007/978-3-031-33080-3_19.

CALATRAVA, Amanda, Hernán ASOREY, Jan ASTALOS, Alberto AZEVEDO, Francesco BENINCASA, Ignacio BLANQUER, Martin BOBAK, Francisco BRASILEIRO, Laia CODÓ, Laura del CANO, Borja ESTEBAN, Meritxell FERRET, Josef HANDL, Tobias KERZENMACHER, Valentin KOZLOV, Aleš KŘENEK, Ricardo MARTINS, Manuel PAVESIO, Antonio Juan RUBIO-MONTERO and Juan SÁNCHEZ-FERRERO. A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. COMPUTER SCIENCE REVIEW. NETHERLANDS: ELSEVIER, 2023, vol. 49. ISSN 1574-0137. Available from: https://dx.doi.org/10.1016/j.cosrev.2023.100571.

JURÁČEK, Jaroslav, Marie BOUDNÁ, Michal STANÍK, Michaela RUČKOVÁ, Karolína TRACHTOVÁ, Hana MALČÍKOVÁ, Eva LŽIČAŘOVÁ, Dominik A BARTH, Martin PICHLER and Ondřej SLABÝ. A tissue miRNA expression pattern is associated with disease aggressiveness of localized prostate cancer. Prostate. HOBOKEN: WILEY, 2023, vol. 83, No 4, p. 340-351. ISSN 0270-4137. Available from: https://dx.doi.org/10.1002/pros.24466.

DAUBNER, Lukáš, Martin MACÁK, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ, Sofija MAKSOVIĆ and Tomáš PITNER. Addressing insider attacks via forensic-ready risk management. JOURNAL OF INFORMATION SECURITY AND APPLICATIONS. ENGLAND: ELSEVIER, 2023, vol. 73, March 2023, p. 103433-103449. ISSN 2214-2126. Available from: https://dx.doi.org/10.1016/j.jisa.2023.103433.

HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL and Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 74, No 1, p. 16-24. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.02.001.

LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ, Tomáš RAČEK, Adrián ROŠINEC, Matej ANTOL and Hervé MÉNAGER. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems. BioHackrXiv. 2023, p. 1-10. Available from: https://dx.doi.org/10.37044/osf.io/79kje.

VOREL, Jiří, Nikol KMENTOVÁ, Christoph HAHN, Petr BUREŠ and Martin KAŠNÝ. An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. BMC Genomics. BioMed Central Ltd, 2023, vol. 24, No 1, p. 1-20. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/s12864-023-09461-8.

DAVID, Romain, Arina RYBINA, Jean-Marie BUREL, Jean-Karim HERICHE, Pauline AUDERGON, Jan-Willem BOITEN, Frederik COPPENS, Sara CROCKETT, Exter KATRINA, Sven FAHRENER, Maddalena FRATELLI, Carole GOBLE, Philipp GORMANNS, Tobias GRANTNER, Bjorn GRUNING, Kim Tamara GURWITZ, John HANCOCK, Henriette HARMSE, Petr HOLUB, Nick JUTY, Geoffrey KARNBACH, Emma KAROUNE, Antje KEPPLER, Jessica KLEMEIER, Carla LANCELOTTI, Jean-Luc LEGRAS, L Allyson LISTER, Livio Longo DARIO, Rebecca LUDWIG, Benedicte MADON, Marzia MASSIMI, Vera MATSER, Rafaele MATTEONI, Michaela Th MAYRHOFER, Ohmann CHRISTIAN, Maria PANAGIOTOPOULOU, Helen PARKINSON, Isabelle PERSEIL, Claudia PFANDER, Roland PIERUSCHKA, Michael RAESS, Andreas RAUBER, Audrey S RICHARD, Paolo ROMANO, Antonio ROSATO, Alex SANCHEZ-PLA, Susanna-Assunta SANSONE, Ugis SARKANS, Beatriz SERRANO-SOLANO, Jing TANG, Ziaurrehman TANOLI, Jonathan TEDDS, Harald WAGENER, Martin WEISE, Hans V WESTERHOFF, Rudolf WITTNER, Jonathan EWBANK, Niklas BLOMBERG and Philip GRIBBON. "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons. EMBO Journal. 2023. ISSN 1460-2075.

ROŠINEC, Adrián and Klára MORAVCOVÁ. Beskar Cloud: OpenStack Deployment on Top of Kubernetes. In 12th Iberian Grid Conference. 2023.

MÜLLER, Heimo, Catarina LOPES-DIAS, Petr HOLUB, Markus PLASS, Emilian JUNGWIRTH, Robert REIHS, Paul R TORKE, Apostolos MALATRAS, Anouk BERGER, Heather COOMBS, Joakim DILLNER and Roxana MERINO-MARTINEZ. BIBBOX, a FAIR toolbox and App Store for Life Science Research. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 77, p. 12-19. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.06.001.

ŠREIBR, Sara, Jana ILGOVÁ, Pavel DOBEŠ, Jiří VOREL, Jacek MARCINIAK, Jana HURYCHOVÁ, Martin KAŠNÝ and Pavel HYRŠL. Bioactive molecules released by Heterorhabditis bacteriophora in response to various activation materials. In Virtual Nematology Conference 2023. 2023.

ZAVADIL, Jan, Tomáš ROHAN, Jaroslav JURÁČEK, Igor KISS, Lenka OSTŘÍŽKOVÁ, Vlastimil VÁLEK, Ondřej SLABÝ and Tomáš ANDRAŠINA. Biomarkery jako prognostické a prediktivní faktory u pacientů s hepatocelulárním karcinomem podstupujících radiologické onkologické intervence (Biomarkers as prognostic and predictive factors in patient with hepatocellular carcinoma undergoing radiological oncological interventions). Klinická onkologie. Praha: Česká lékařská společnost J. E. Purkyně, 2023, vol. 36, No 2, p. 104-111. ISSN 0862-495X. Available from: https://dx.doi.org/10.48095/ccko2023104.

DAUBNER, Lukáš, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ and Tomáš PITNER. BPMN4FRSS: An BPMN Extension to Support Risk-Based Development of Forensic-Ready Software Systems. Online. In Evaluation of Novel Approaches to Software Engineering. Cham: Springer Nature Switzerland, 2023, p. 20-43. ISBN 978-3-031-36596-6. Available from: https://dx.doi.org/10.1007/978-3-031-36597-3_2.

ROŠINEC, Adrián and Klára MORAVCOVÁ. Building OpenStack Cloud with Kubernetes as Undercloud. In EGI Conference 2023. 2023.

CAPANDOVÁ, Michaela. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In Annual Meeting, Pavlov, 24.5.-26.5.2023. 2023.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Dáša BOHAČIAKOVÁ, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Matej ANTOL and Aleš HAMPL. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In The Annual PhD Conference in Biomedical Sciences. 2023.

VÁŇOVÁ, Tereza, Jiří SEDMÍK, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Petr TAUŠ, Veronika POSPÍŠILOVÁ, Markéta NEZVEDOVÁ, Veronika FEDOROVÁ, Soňa KADÁKOVÁ, Hana KLÍMOVÁ, Michaela CAPANDOVÁ, Petra ORVISKÁ, Petr FOJTÍK, Simona BÁRTOVÁ, Karla PLEVOVÁ, Zdeněk SPÁČIL, Hana HŘÍBKOVÁ and Dáša BOHAČIAKOVÁ. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development. CELL REPORTS. CAMBRIDGE: CELL PRESS, 2023, vol. 42, No 11, p. 1-27. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2023.113310.

SVOBODA, Tomáš, Aleš KŘENEK, Łukasz OPIOŁA, Andrea MANZI and Josef HANDL. Cloudification of scientific experimental data using Onedata. In EGI Conference 2023. 2023.

JURÁČEK, Jaroslav, Marie MĄDRZYK, Karolína TRACHTOVÁ, Michaela RUČKOVÁ, Júlia BOHOŠOVÁ, Dominik A. BARTH, Martin PICHLER, Michal STANÍK and Ondřej SLABÝ. Combination of Urinary MiR-501 and MiR-335 With Current Clinical Diagnostic Parameters as Potential Predictive Factors of Prostate Biopsy Outcome. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, vol. 20, No 3, p. 308-316. ISSN 1109-6535. Available from: https://dx.doi.org/10.21873/cgp.20383.

MACÁK, Martin, Tomáš REBOK, Matúš ŠTOVČIK, Mouzhi GE, Bruno ROSSI and Barbora BÜHNOVÁ. CopAS: A Big Data Forensic Analytics System. Online. In Proceedings of the 8th International Conference on Internet of Things, Big Data and Security IoTBDS - Volume 1. Setubal, Portugal: SciTePress, 2023, p. 150-161. ISBN 978-989-758-643-9. Available from: https://dx.doi.org/10.5220/0011929000003482.

REBOK, Tomáš and Ondřej MACHALA. CoPAS: the Modular Data Analytics Tool. 2023.

POLČÁK, Radim, Jakub MÍŠEK, Matěj MYŠKA, Jakub HARAŠTA, Pavel LOUTOCKÝ, Bettina BACHER, Václav STUPKA, Michal KOŠČÍK, David ŠMAHEL, Monika METYKOVÁ, Herbert HRACHOVEC, Andreas KIRCHNER, Alena MACKOVÁ, Jakub MACEK, Dan Jerker Börje SVANTESSON, Erich SCHWEIGHOFER, Hana MACHÁČKOVÁ, Zbyněk LOEBL, Andreas WIEBE, Tamás SZÁDECZKY, Jan HOSPES, Nikolaus FORGÓ, Michal ČERNÝ, Jiří MAREK and Alex IVANČO. Cyberspace 2023. 2023.

DAUBNER, Lukáš and Adam POVAŽANEC. Data Loss Prevention Solution for Linux Endpoint Devices. Online. In ARES '23: Proceedings of the 18th International Conference on Availability, Reliability and Security. United States: Association for Computing Machinery, 2023, p. 1-10. ISBN 979-8-4007-0772-8. Available from: https://dx.doi.org/10.1145/3600160.3605036.

BULLA, Lukas, Kristian HJORTH, Oskar KOHOUT, Jan LANG, Sebastian ECKER, Sebastian NEUMANN, Julius BITTERMANN, Robert KINDLER, Marcus HUBER, Martin BOHMANN, Rupert URSIN and Matej PIVOLUSKA. Distribution of genuine high-dimensional entanglement over 10.2 km of noisy metropolitan atmosphere. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2023, vol. 107, L050402, p. 1-5. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.107.L050402.

HEJTMÁNEK, Lukáš, Adrián ROŠINEC and Sebastian LUNA-VALERO. Easy Deployment of Dask and Jupyter Notebooks on Managed Kubernetes. In EGI Conference 2023. 2023.

ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Aleš KŘENEK and Radka SVOBODOVÁ. Enhancing Data Accessibility: Strategies and Tools for Effective Metadata Management. In IBERGRID 2023. 2023.

HERREROS, David, Roy R. LEDERMAN, James M. KRIEGER, Amaya JIMÉNEZ-MORENO, Marta MARTÍNEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Carlos O. S. SORZANO and José M. CARAZO. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials. Nature Communications. 2023, vol. 14, No 1, p. 1-10. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-35791-y.

DAUBNER, Lukáš, Barbora BÜHNOVÁ and Tomáš PITNER. Forensic experts' view of forensic-ready software systems: A qualitative study. Journal of Software: Evolution and Process. John Wiley & Sons Ltd., 2023, Neuveden, e2598, p. 1-23. ISSN 2047-7481. Available from: https://dx.doi.org/10.1002/smr.2598.

KREJČÍŘ, Vlastimil, Alžbeta STRAKOŠOVÁ and Jan ADLER. From DSpace to Islandora: Why and How. code{4}lib journal. code{4}lib, 2023, No 57. ISSN 1940-5758.

ČERMÁK, Milan and Petr VELAN. How can network traffic lie? DFRWS EU 2023, 2023.

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ and Karel BERKA. ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era. In 3D-BioInfo | ICSB 3D-SIG | ELIXIR Czech Republic Community Meeting in Structural Bioinformatics. 2023.

SCHINDLER, Ondřej, Karel BERKA, Alessio CANTARA, Aleš KŘENEK, Dominik TICHÝ, Tomáš RAČEK and Radka SVOBODOVÁ. αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Research. Oxford: Oxford University Press, 2023, vol. 51, W1, p. "W11"-"W16", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad349.

SVOBODA, Tomáš, Radka SVOBODOVÁ, David ANTOŠ, Adrián ROŠINEC and Aleš KŘENEK. Introduction to Onedata at CEITEC MU and in Czech National Repository Platform. In MATECHat meeting. 2023.

PETROVIČ, Filip and Jiří FILIPOVIČ. Kernel Tuning Toolkit. SoftwareX. Elsevier, 2023, vol. 22, neuveden, p. 1-6. ISSN 2352-7110. Available from: https://dx.doi.org/10.1016/j.softx.2023.101385.

RAČEK, Tomáš, Tomáš SVOBODA and Radka SVOBODOVÁ. Management of life-science data and their metadata. In XXII. setkání biochemiků a molekulárních biologů. 2023.

KUREČKA, Martin. Monte Carlo Tree Search with Function Approximation for Risk-constrained Planning and Reinforcement Learning. In The IJCAI-23 Joint Workshop on Artificial Intelligence Safety and Safe Reinforcement Learning. 2023.

SVOBODOVÁ, Radka, Karel BERKA, Ivana HUTAŘOVÁ VAŘEKOVÁ, Tomáš RAČEK and Ondřej SCHINDLER. New ways of protein family visualization in AlphaFold era. In 3D-BioInfo | ICSB 3D-SIG | ELIXIR Czech Republic Community Meeting in Structural Bioinformatics. 2023.

SPIŠAKOVÁ, Viktória, Lukáš HEJTMÁNEK and Jakub HYNŠT. Nextflow in Bioinformatics: Executors Performance Comparison Using Genomics Data. FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE. NETHERLANDS: ELSEVIER, 2023, vol. 142, May 2023, p. 328-339. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2023.01.009.

BULLA, Lukas, Matej PIVOLUSKA, Kristian HJORTH, Oskar KOHOUT, Jan LANG, Sebastian ECKER, Sebastian P NEUMANN, Julius BITTERMANN, Robert KINDLER, Marcus HUBER, Martin BOHMANN and Rupert URSIN. Nonlocal Temporal Interferometry for Highly Resilient Free-Space Quantum Communication. Physical Review X. College Park: American Physical Society, 2023, vol. 13, No 2, p. 1-12. ISSN 2160-3308. Available from: https://dx.doi.org/10.1103/PhysRevX.13.021001.

ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Josef HANDL, Jozef SABO, Aleš KŘENEK and Radka SVOBODOVÁ. Onedata4Sci: Life-science experimental datasets management system. In 3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic Structural Bioinformatics. 2023.

DRAŠAR, Martin. Perception of the Environment. Online. In Kott, Alexander. Autonomous Intelligent Cyber Defense Agent (AICA): A Comprehensive Guide. 1st ed. Cham: Springer International Publishing, 2023, p. 47-61. Advances in Information Security, 87. ISBN 978-3-031-29269-9. Available from: https://dx.doi.org/10.1007/978-3-031-29269-9_3.

HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL and Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, vol. 14, No 2577, p. 1-15. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-37991-y.

PLASS, Markus, Rudolf WITTNER, Petr HOLUB, Francesca FREXIA, Cecilia MASCIA, Matej GALLO, Heimo MÜLLER and Jörg GEIGER. Provenance of specimen and data – A prerequisite for AI development in computational pathology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 78, DEC, p. 22-28. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.09.006.

ANTOL, Matej, Michal RŮŽIČKA, Luděk MATYSKA and Jiří MAREK. Public (Health) Sector and Academia. In Martin Komenda. Data-Driven Decision-Making in Medical Education and Healthcare. First edition. Brno: Masaryk University, 2023, p. 51-66. Data Rulezzzz! ISBN 978-80-280-0392-0.

VÁVRA, Ondřej, Jakub BERANEK, Jan ŠTOURAČ, Martin SURKOVSKY, Jiří FILIPOVIČ, Jiří DAMBORSKÝ, Jan MARTINOVIC and David BEDNÁŘ. pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinformatics. Oxford: Oxford University Press, 2023, vol. 39, No 8, p. 1-3. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btad443.

ARAUJO, Mateus, Marcus HUBER, Miguel NAVASCUES, Matej PIVOLUSKA and Armin TAVAKOLI. Quantum key distribution rates from semidefinite programming. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2023, vol. 7, No 1, p. 1-18. ISSN 2521-327X. Available from: https://dx.doi.org/10.22331/Q-2023-05-24-1019.

SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA, Vlastislav DOHNAL, Susana LADRA and Miguel A. MARTÍNEZ-PRIETO. Reproducible experiments with Learned Metric Index Framework. Information systems. Elsevier, 2023, vol. 118, No 1, p. 102255-102270. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2023.102255.

SLABÝ, Ondřej, Jaroslav JURÁČEK and Michal STANÍK. Sada pro odlišení indolentního a agresivního karcinomu prostaty (Kit for differentiating indolent and aggressive prostate cancer). 2023.

GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB and Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 78, December, p. 52-67. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.09.008.

SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. SISAP 2023 Indexing Challenge – Learned Metric Index. In Pedreira, O., Estivill-Castro, V. Similarity Search and Applications. SISAP 2023. Lecture Notes in Computer Science, vol 14289. Cham: Springer, 2023, p. 282-290. ISBN 978-3-031-46993-0. Available from: https://dx.doi.org/10.1007/978-3-031-46994-7_24.

KLAŠKA, David, Antonín KUČERA, Martin KUREČKA, Vít MUSIL, Petr NOVOTNÝ and Vojtěch ŘEHÁK. Synthesizing Resilient Strategies for Infinite-Horizon Objectives in Multi-Agent Systems. Online. In Edith Elkind. Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, IJCAI 2023,. Neuveden: International Joint Conferences on Artificial Intelligence, 2023, p. 171-179. ISBN 978-1-956792-03-4. Available from: https://dx.doi.org/10.24963/ijcai.2023/20.

MESSINA, Nicola, Jan SEDMIDUBSKÝ, Falchi FABRIZIO and Tomáš REBOK. Text-to-Motion Retrieval: Towards Joint Understanding of Human Motion Data and Natural Language. Online. In 46th International Conference on Research and Development in Information Retrieval (SIGIR). New York, NY, USA: Association for Computing Machinery, 2023, p. 2420-2425. ISBN 978-1-4503-9408-6. Available from: https://dx.doi.org/10.1145/3539618.3592069.

TØRRING, Jacob O, van Werkhoven BEN, Filip PETROVIČ, Floris-Jan WILLEMSEN, Jiří FILIPOVIČ and Anne C ELSTER. Towards a Benchmarking Suite for Kernel Tuners. Online. In 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). neuveden: IEEE, 2023, p. 724-733. ISBN 979-8-3503-1199-0. Available from: https://dx.doi.org/10.1109/IPDPSW59300.2023.00124.

RUSŇÁK, Vít and Martin DRAŠAR. Towards a Visual Analytics Workflow for Cybersecurity Simulations. Online. In Christophe Hurter, Helen Purchase, Kadi Bouatouch. Proceedings of VISIGRAPP2023 - Volume3: IVAPP. To appear. Lisbon, Portugal: SCITEPRESS – Science and Technology Publications, Lda., 2023, p. 179-186. ISBN 978-989-758-634-7. Available from: https://dx.doi.org/10.5220/0011695000003417.

DAVID, Romain, Audrey RICHARD, Claire CONNELLAN, Katharina LAUER, Maria Luisa CHIUSANO, Carole GOBLE, Martin HOUDE, Isabel KEMMER, Antje KEPPLER, Philippe LIEUTAUD, Christian OHMANN, Maria PANAGIOTOPOULOU, Sara Raza KHAN, Arina RYBINA, Stian SOILAND-REYES, Charlotte WIT, Rudolf WITTNER, Rafael Andrade BUONO, Sarah Arnaud MARSH, Pauline AUDERGON, Dylan BONFILS, Carazo JOSE-MARIA, Remi CHARREL, Frederik COPPENS, Wolfgang FECKE, Claudia FILIPPONE, Eva Garcia ALVAREZ, Sheraz GUL, Henning HERMJAKOB, Katja HERZOG, Petr HOLUB, Lukasz KOZERA, Allyson LISTER, José LÓPEZ-CORONADO, Bénédicte MADON, Kurt MAJCEN, William MARTIN, Wolfgang MÜLLER, Elli PAPADOPOULOU, Christine M.A. PRAT, Paolo ROMANO, Sansone SUSANNA-ASSUNTA, Gary SAUNDERS, Niklas BLOMBERG and Jonathan EWBANK. Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Science Journal. Ubiquity Press, 2023. ISSN 1683-1470. Available from: https://dx.doi.org/10.5334/dsj-2023-035.

STŘELÁK, David, David MYŠKA, Filip PETROVIČ, Jan POLÁK, Jaroslav OĽHA and Jiří FILIPOVIČ. Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes. Computing. Springer, 2023, vol. 105, No 11, p. 2389-2417. ISSN 0010-485X. Available from: https://dx.doi.org/10.1007/s00607-023-01190-w.

SPIŠAKOVÁ, Viktória, Dalibor KLUSÁČEK and Lukáš HEJTMÁNEK. Using Kubernetes in Academic Environment : Problems and Approaches. In Dalibor Klusáček, Julita Corbalán, Gonzalo P. Rodrigo. Job Scheduling Strategies for Parallel Processing. 1st ed. Cham (Switzerland): Springer, 2023, p. 235-253. ISBN 978-3-031-22697-7. Available from: https://dx.doi.org/10.1007/978-3-031-22698-4_12.

ČERMÁK, Milan, Tatiana FRITZOVÁ, Vít RUSŇÁK and Denisa ŠRÁMKOVÁ. Using relational graphs for exploratory analysis of network traffic data. Forensic Science International: Digital Investigation. 2023, vol. 45, S, p. 1-10. ISSN 2666-2825. Available from: https://dx.doi.org/10.1016/j.fsidi.2023.301563.

HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA and Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, vol. 42, No 3, p. 63-73. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14812.

HERREROS, David, Jakub KISKA, Erney RAMÍREZ-APORTELA, Jiří FILIPOVIČ, José María CARAZO and Carlos Oscar SORZANO. ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis. Journal of Molecular Biology. Elsevier, 2023, vol. 435, No 9, p. 1-14. ISSN 0022-2836. Available from: https://dx.doi.org/10.1016/j.jmb.2023.168088.

RAČEK, Tomáš. Zpracování dat na CEITECu. In SitSem - Seminář laboratoře Sitola. 2023.

SCHINDLER, Ondřej, Tomáš RAČEK and Radka SVOBODOVÁ. Alphacharges - a web service for calculating QM-like partial atomic charges for AlphaFold proteins. In XXI. setkání biochemiků a molekulárních biologů. 2022.

PITNER, Tomáš, Otto DOSTÁL, Michal JAVORNÍK, Pavel ANDRES, Aleš ROČEK, Karel SLAVÍČEK, Tomáš KUBALA and Otto DOSTÁL. Analýza systému pro podporu efektivní spolupráce distribuovaných zdravotnických týmů (Analysis of a system to support effective collaboration of distributed healthcare teams). Brno: MU, 2022, 76 pp.

RAČEK, Tomáš, Ondřej SCHINDLER, Lenka PTÁČNÍKOVÁ and Radka SVOBODOVÁ. Atomic Charge Calculator II – a web service for calculating partial atomic charges. In ENBIK2022. 2022. ISBN 978-80-7592-127-7.

BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR and Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, vol. 8, No 2, p. 129-142. ISSN 2056-4538. Available from: https://dx.doi.org/10.1002/cjp2.249.

SVOBODA, Tomáš, Aleš KŘENEK and Josef HANDL. Automatic storing, sharing and archiving datasets with Onedata. In EGI Conference 2022. 2022.

SVOBODA, Tomáš, Aleš KŘENEK and Josef HANDL. Automating scientific dataset management and processing using Onedata. In IBERGRID 2022. 2022.

MIHÁLIKOVÁ, Ivana, Martin FRIÁK, Matej PIVOLUSKA, Martin PLESCH, Martin SAIP and Mojmír ŠOB. Best-Practice Aspects of Quantum-Computer Calculations: A Case Study of the Hydrogen Molecule. MOLECULES. SWITZERLAND: MDPI, 2022, vol. 27, No 3, p. 1-15. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules27030597.

SPIWOK, Vojtěch, Martin KUREČKA and Aleš KŘENEK. Collective Variable for Metadynamics Derived From AlphaFold Output. FRONTIERS IN MOLECULAR BIOSCIENCES. SWITZERLAND: FRONTIERS MEDIA SA, 2022, vol. 2022, No 9, p. 1-10. ISSN 2296-889X. Available from: https://dx.doi.org/10.3389/fmolb.2022.878133.

HUSÁK, Martin, Lukáš SADLEK, Stanislav ŠPAČEK, Martin LAŠTOVIČKA, Michal JAVORNÍK and Jana KOMÁRKOVÁ. CRUSOE: A Toolset for Cyber Situational Awareness and Decision Support in Incident Handling. Computers & Security. Elsevier, 2022, vol. 115, April, p. 1-19. ISSN 0167-4048. Available from: https://dx.doi.org/10.1016/j.cose.2022.102609.

RUMAN, Ádám and Daniel KOUŘIL. Detection of Malicious Code in SSH programs. In Sborník příspěvků z 54. konference EurOpen.CZ. 2022, p. 115-124.

SCHWARZ, Josef and Vlastimil KREJČÍŘ. Digitalia MUNI ARTS – více než digitální knihovna : výzkumná infrastruktura Filozofické fakulty Masarykovy univerzity a systém Islandora (Digitalia MUNI ARTS - more than a digital library : the research infrastructure of the Faculty of Arts of Masaryk University and the Islandora system). In Archivy, knihovny, muzea v digitálním světě 2022. 2022.

APPEL, Paul, Alexander J. HEILMAN, Ezekiel W. WERTZ, David W. LYONS, Marcus HUBER, Matej PIVOLUSKA and Giuseppe VITAGLIANO. Finite-Function-Encoding Quantum States. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2022, vol. 6, No 708, p. 1-34. ISSN 2521-327X. Available from: https://dx.doi.org/10.22331/q-2022-05-09-708.

KREJČÍŘ, Vlastimil. From DSpace to Islandora : why and how. In Innovative Library in Digital Era (ILIDE) 2022. 2022.

PIVOLUSKA, Matej and Martin PLESCH. Implementation of quantum compression on IBM quantum computers. Nature Scientific Reports. USA: NATURE PUBLISHING GROUP, 2022, vol. 12, No 1, p. 5841-5849. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-09881-8.

NĚMCOVÁ, Petra, Jana HOZZOVÁ and Jiří FILIPOVIČ. Improving ligand transport trajectory within flexible receptor in CaverDock. Online. In SAC '22: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing. USA: Association for Computing Machinery, 2022, p. 619-626. ISBN 978-1-4503-8713-2. Available from: https://dx.doi.org/10.1145/3477314.3506988.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques. arXiv, 2022. Available from: https://dx.doi.org/10.48550/ARXIV.2208.08910.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques. In Tomáš Skopal, Fabrizio Falchi, Jakub Lokoč, Maria Luisa Sapino, Ilaria Bartolini, Marco Patella. Similarity Search and Applications, 15th International Conference, SISAP 2022, Bologna, Italy, October 5–7, 2022, Proceedings. 1st ed. Cham: Springer Cham, 2022, p. 274-282. ISBN 978-3-031-17848-1. Available from: https://dx.doi.org/10.1007/978-3-031-17849-8_22.

WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER and Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, vol. 2022, No 9, p. 1-19. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-022-01537-6.

KUREČKA, Martin. Lower bound on the size of a quasirandom forcing set of permutations. COMBINATORICS PROBABILITY & COMPUTING. 2022, vol. 31, No 2, p. 304-319. ISSN 0963-5483. Available from: https://dx.doi.org/10.1017/S0963548321000298.

SPIŠAKOVÁ, Viktória, Adrián ROŠINEC, Lukáš HEJTMÁNEK and Matej ANTOL. Managed Kubernetes — Next Gen Academic Infrastructure? In EGI Conference 2022. 2022.

JAVORNÍK, Michal and Martin HUSÁK. Mission-centric Decision Support in Cybersecurity via Bayesian Privilege Attack Graph. Engineering Reports. John Wiley & Sons, Inc, 2022, vol. 4, No 12, p. "e12538", 25 pp. ISSN 2577-8196. Available from: https://dx.doi.org/10.1002/eng2.12538.

SORZANO, Carlos, Amaya JIMÉNEZ-MORENO, David MALUENDA, Marta MARTÍNEZ, Erney RAMÍREZ-APORTELA, James KRIEGER, Roberto MELERO, Ana CUERVO, Javier CONESA, Jiří FILIPOVIČ, Pablo CONESA, Laura del CAÑO, Yunior FONSECA, Jorge Jiménez-de LA MORENA, Patricia LOSANA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Jose Luis VILAS, Roberto MARABINI and Jose Maria CARAZO. On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2022, vol. 78, No 4, p. 410-423. ISSN 2059-7983. Available from: https://dx.doi.org/10.1107/S2059798322001978.

PORTEŠOVÁ, Šárka, Eva NOVÁKOVÁ, Růžena BLAŽKOVÁ, Michal JABŮREK, Ondřej STRAKA, Michal RŮŽIČKA, Matěj SMETANA, Jaroslav TOČÍK, Jana UNČOVSKÁ, Kateřina KREPSOVÁ, Ondřej DVOŘÁK, Ondřej VORÁČ, Jan KOTTMAN, Zdeněk NOVÁK, Petra BUŠKOVÁ, Jindřiška SVOBODOVÁ, Eva MALACHOVÁ and Tereza HRSTKOVÁ. Podporujeme nadané prvňáčky (We support gifted pupils in the first grades). 2022.

GOVARTS, Eva, Liese GILLES, Stephanie BOPP, Petr HOLUB, Leslie MATALONGA, Roel VERMEULEN, Martine VRIJHEID, Sergi BELTRAN, Mette HARTLEV, Sarah JONES, Laura Rodriguez MARTIN, Arnout STANDAERT, Morris A SWERTZ, Jan THEUNIS, Xenia TRIER, Nina VOGEL, Koert VAN ESPEN, Sylvie REMY and Greet SCHOETERS. Position paper on management of personal data in environment and health research in Europe. Environment International. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, vol. 165. ISSN 0160-4120. Available from: https://dx.doi.org/10.1016/j.envint.2022.107334.

SCHINDLER, Ondřej, Tomáš RAČEK and Radka SVOBODOVÁ. Prediction of QM-like partial atomic charges for alphafold. In XXII. Workshop of biophysical chemists and electrochemists. 2022. ISBN 978-80-280-0087-5.

TRAPL, Dalibor, MArtin KRUPIČKA, Vladimír VIŠŇOVSKÝ, Jana HOZZOVÁ, Jaroslav OĽHA, Aleš KŘENEK and Vojtěch SPIWOK. Property Map Collective Variable as a Useful Tool for a Force Field Correction. Journal of Chemical Information and Modeling. American Chemical Society, 2022, vol. 62, No 3, p. 567-576. ISSN 1549-9596. Available from: https://dx.doi.org/10.1021/acs.jcim.1c00651.

SCHINDLER, Ondřej, Tomáš RAČEK, Kamil JELÍNEK and Radka SVOBODOVÁ. QM-like partial atomic charges for AlphaFold available online. In ENBIK2022. 2022. ISBN 978-80-7592-127-7.

PARDY, Filip, Jakub HYNŠT, Dana FIALOVÁ, Kristýna BRZOBOHATÁ, Lukáš HEJTMÁNEK and Šárka POSPÍŠILOVÁ. Reconstructing of the genome of Gregor Johann Mendel using state-of-the-art molecular and bioinformatics tools. In Mendel Genetics Conference 2022. 2022.

RAI, Ashutosh, Matej PIVOLUSKA, Souradeep SASMAL, Manik BANIK, Sibasish GHOSH and Martin PLESCH. Self-testing quantum states via nonmaximal violation in Hardy's test of nonlocality. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2022, vol. 105, No 5, p. 1-8. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.105.052227.

FREXIA, Francesca, Cecilia MASCIA, Rudolf WITTNER, Markus PLASS, Heimo MÜLLER, Jörg GEIGER and Petr HOLUB. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. In Challenges of Trustable AI and Added-Value on Health. 2022. Available from: https://dx.doi.org/10.3233/SHTI220489.

MIHÁLIKOVÁ, Ivana, Matej PIVOLUSKA, Martin PLESCH, Martin FRIÁK, Daniel NAGAJ and Mojmír ŠOB. The Cost of Improving the Precision of the Variational Quantum Eigensolver for Quantum Chemistry. Nanomaterials. London: MDPI, 2022, vol. 12, No 2, p. 1-22. ISSN 2079-4991. Available from: https://dx.doi.org/10.3390/nano12020243.

DUDOVÁ, Zdenka, Nathalie CONTE, Jeremy MASON, Dalibor STUCHLÍK, Radim PEŠA, Csaba HALMAGYI, Zinaida PEROVA, Abayomi MOSAKU, Ross THORNE, Alex FOLLETTE, Ľuboslav PIVARČ, Radim ŠAŠINKA, Muhammad USMAN, Steven NEUHAUSER, Dale A BEGLEY, Debra M KRUPKE, Massimiliano FRASSÀ, Alessandro FIORI, Riccardo CORSI, Luca VEZZADINI, Claudio ISELLA, Andrea BERTOTTI, Carol BULT, Helen PARKINSON, Enzo MEDICO, Terrence MEEHAN and Aleš KŘENEK. The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization. BMC Genomics. BioMed Central, 2022, vol. 23, No 1, p. 1-11. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/s12864-022-08367-1.

FILIPOVIČ, Jiří, Jana HOZZOVÁ, Amin NEZARAT, Jaroslav OĽHA and Filip PETROVIČ. Using hardware performance counters to speed up autotuning convergence on GPUs. Journal of Parallel and Distributed Computing. Elsevier, 2022, vol. 160, February, p. 16-35. ISSN 0743-7315. Available from: https://dx.doi.org/10.1016/j.jpdc.2021.10.003.

TÓTH, Adrián and Mouzhi GE. A Deployable Data as a Service Architecture for Enterprises. Online. In 978-989-758-504-3. PROCEEDINGS OF THE 6TH INTERNATIONAL CONFERENCE ON INTERNET OF THINGS, BIG DATA AND SECURITY (IOTBDS). SETUBAL: SCITEPRESS, 2021, p. 278-285. ISBN 978-989-758-504-3. Available from: https://dx.doi.org/10.5220/0010470702780285.

BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. A Hybrid Data-driven Model for Intrusion Detection in VANET. Online. In Shakshuki, E; Yasar, A. The 12th International Conference on Ambient Systems, Networks and Technologies (ANT 2021). Warsaw, Poland: Elsevier Science, 2021, p. 516-523. ISSN 1877-0509. Available from: https://dx.doi.org/10.1016/j.procs.2021.03.065.

STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA, David MALUENDA, Javier VARGAS, David HERREROS, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, Jan HORÁČEK, David MYŠKA, Martin HORÁČEK, Pablo CONESA, Yunior FONSECA-REYNA, Jorge JIMÉNEZ, Marta MARTÍNEZ, Mohamad HARASTANI, Slavica JONIĆ, Jiří FILIPOVIČ, Roberto MARABINI, José CARAZO and Carlos SORZANO. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion. Molecules. Mayer und Muller, 2021, vol. 26, No 20, p. 1-14. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26206224.

HERREROS, David, Roy R LEDERMAN, James KRIEGER, Amaya JIMENEZ-MORENO, Marta MARTINEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Ivet BAHAR, Jose Maria CARAZO and Carlos Oscar S SANCHEZ. Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials. International Union of Crystallography Journals. online, 2021, vol. 8, No 6, p. 992-1005. ISSN 2052-2525. Available from: https://dx.doi.org/10.1107/S2052252521008903.

REIHS, Robert, Rumyana PROYNOVA, Saher MAQSOOD, Maxmilian ATAIAN, Martin LABLANS, Philip R. QUINLAN, Emma LAWRENCE, Erinna BOWMAN, Esther VAN ENCKEVORT, Dominik František BUČÍK, Heimo MÜLLER and Petr HOLUB. BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, 8 pp. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2020.0144.

SILLITOE, Ian, Nicola BORDIN, Natalie DAWSON, Vaishali P. WAMAN, Paul ASHFORD, Harry M. SCHOLES, Camilla S.M. PANG, Laurel WOODRIDGE, Clemens RAUER, Neeladri SEN, Mahnaz ABBASIAN, Sean LE CORNU, Su Datt LAM, Karel BERKA, Ivana HUTAŘOVÁ VAŘEKOVÁ, Radka SVOBODOVÁ, Jon LEES and Christine A. ORENGO. CATH: increased structural coverage of functional space. Nucleic Acids Research. Oxford: Oxford University Press, 2021, vol. 49, D1, p. "D266"-"D273", 8 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkaa1079.

LÍŠKA, Martin, Dávid LUPTÁK, Vít STARÝ NOVOTNÝ, Michal RŮŽIČKA, Boris SHMINKE, Petr SOJKA, Michal ŠTEFÁNIK and Makarius WENZEL. CICM'21 Systems Entries. Online. In 978-3-030-81097-9. INTELLIGENT COMPUTER MATHEMATICS (CICM 2021). CHAM: SPRINGER INTERNATIONAL PUBLISHING AG, 2021, p. 245-248. ISBN 978-3-030-81096-2. Available from: https://dx.doi.org/10.1007/978-3-030-81097-9_20.

HOŠEK, Štěpán, Oldřich FALDÍK, Oldřich TRENZ and Barbora BÜHNOVÁ. Cloud platforms: An overview considering options for Digital Twin implementation. In 23rd international conference Economic Competitiveness and Sustainability (ECOS). 2021.

VIŠŇOVSKÝ, Vladimír, Viktória SPIŠAKOVÁ, Jana HOZZOVÁ, Jaroslav OĽHA, Dalibor TRAPL, Vojtěch SPIWOK, Lukáš HEJTMÁNEK and Aleš KŘENEK. Complex simulation workflows in containerized high-performance environment. In Armenia S., Geril P. Proc. ESM 2021. Brusel: EUROSIS, 2021, p. 42-45. ISBN 978-94-92859-18-1.

DAMBORSKÝ, Jiří, David BEDNÁŘ, Zbyněk PROKOP, Martin MAREK, Stanislav MAZURENKO, Jan ŠTOURAČ, Sérgio Manuel MARQUES, Gabriela Filipa FONSECA PINTO, Joan PLANAS IGLESIAS, Miloš MUSIL, Jiří HON, Ondřej VÁVRA, Rayyan Tariq KHAN, Jiří FILIPOVIČ and Barbora KOZLÍKOVÁ. Computational enzyme design for metabolic engineering. In The 45th FEBS Congress. 2021. ISSN 2211-5463.

RAČEK, Tomáš and Ondřej SCHINDLER. COMPUTER-AIDED MODEL DESIGN OF EMPIRICAL METHODS FOR CALCULATING PARTIAL ATOMIC CHARGES. Online. In 978-9-492-85918-1. MODELLING AND SIMULATION 2021: 35TH ANNUAL EUROPEAN SIMULATION AND MODELLING CONFERENCE 2021 (ESM 2021). GHENT: EUROSIS, 2021, p. 16-20. ISBN 978-94-92859-18-1.

GRYGA, Lukáš and Bruno ROSSI. Co-simulation of Smart Grids: Dynamically Changing Topologies in Failure Scenarios. Online. In International Conference on Complexity, Future Information Systems and Risk (Complexis 2021). Setúbal, Portugal: SciTePress, 2021, p. 63-69. ISBN 978-989-758-505-0. Available from: https://dx.doi.org/10.5220/0010448700630069.

SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. Data-driven Learned Metric Index: an Unsupervised Approach. In 14th International Conference on Similarity Search and Applications (SISAP 2021). Cham: Springer, 2021, p. 81-94. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_7.

JIMÉNEZ-MORENO, Amaya, David STŘELÁK, Jiří FILIPOVIČ, José María CARAZO and Carlos Óscar S. SORZANO. DeepAlign, a 3D Alignment Method based on Regionalized Deep Learning for Cryo-EM. Journal of Structural Biology. San Diego,USA: Academic Press, 2021, vol. 213, No 2, p. "107712", 14 pp. ISSN 1047-8477. Available from: https://dx.doi.org/10.1016/j.jsb.2021.107712.

RAI, A., Matej PIVOLUSKA, Martin PLESCH, S. SASMAL, M. BANIK and S. GHOSH. Device-independent bounds from Cabello's nonlocality argument. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 6, p. 1-7. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.062219.

HAPPE, Lucia, Barbora BÜHNOVÁ, Anne KOZIOLEK and Ingo WAGNER. Effective measures to foster girls’ interest in secondary computer science education. Education and Information Technologies. Neuveden: Springer, 2021, vol. 2020, November, p. 1-19. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-020-10379-x.

WITTNER, Rudolf, Jörg GEIGER, Cecilia MASCIA, Francesca FREXIA, Heimo MULLER and Petr HOLUB. Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment. In Provenance Week 2021; Workshop on Provenance for Transparent Research. 2021.

IQBAL, Danish and Barbora BÜHNOVÁ. Fog Based Energy Efficient Process Framework for Smart Building. In EASE 2021: Evaluation and Assessment in Software Engineering. Trondheim, Norway: ACM, 2021, p. 387-393. ISBN 978-1-4503-9053-8. Available from: https://dx.doi.org/10.1145/3463274.3463364.

REHM, Heidi L, Angela J H PAGE, Lindsay SMITH, Jeremy B ADAMS, Gil ALTEROVITZ, Lawrence J BABB, Maxmillian P BARKLEY, Michael BAUDIS, Michael J S BEAUVAIS, Tim BECK, Jacques S BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James K BONFIELD, Tiffany F BOUGHTWOOD, Guillaume BOURQUE, Sarion R BOWERS, Anthony J BROOKES, Michael BRUDNO, Matthew H BRUSH, David BUJOLD, Tony BURDETT, Orion J BUSKE, Moran N CABILI, Daniel L CAMERON, Robert J CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal P CHAUDHARI, Shu Hui CHEN, J Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley L CLISSOLD, Robert M COOK-DEEGAN, Melanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert M DAVIES, Danielle DENISKO, Megan J DOERR, Lena I DOLMAN, Edward S DOVE, L Jonathan DURSI, Stephanie O M DYKE, James A EDDY, Karen EILBECK, Kyle P ELLROTT, Susan FAIRLEY, Khalid A FAKHRO, Helen V FIRTH, Michael S FITZSIMONS, Marc FIUME, Paul FLICEK, Ian M FORE, Mallory A FREEBERG, Robert R FREIMUTH, Lauren A FROMONT, Jonathan FUERTH, Clara L GAFF, Weiniu GAN, Elena M GHANAIM, David GLAZER, Robert C GREEN, Malachi GRIFFITH, Obi L GRIFFITH, Robert L GROSSMAN, Tudor GROZA, Jaime M Guidry AUVIL, Roderic GUIGO, Dipayan GUPTA, Melissa A HAENDEL, Ada HAMOSH, David P HANSEN, Reece K HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele M HENDRICKS-STURRUP, Calvin W L HO, Ashley E HOBB, Michael M HOFFMAN, Oliver M HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah E HUNT, Ammar HUSAMI, Julius O JACOBSEN, Saumya S JAMUAR, Elizabeth L JANES, Francis JEANSON, Aina JENE, Amber L JOHNS, Yann JOLY, Steven J M JONES, Alexander KANITZ, Kazuto KATO, Thomas M KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha M KNOPPERS, Melissa A KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael F LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke M LUCASSEN, Michael LUKOWSKI, Alice L MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard J MILNE, Fruzsina MOLNAR-GABOR, Nicola MULDER, Monica C MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan H NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi H NYRONEN, Brian D CONNOR, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura A D PAGLIONE, Emilio PALUMBO, Helen E PARKINSON, Anthony A PHILIPPAKIS, Angel D PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee A RIDER, Peter N ROBINSON, Kurt W RODARMER, Laura Lyman RODRIGUEZ, Alan F RUBIN, Manuel RUEDA, Gregory A RUSHTON, Rosalyn S RYAN, Gary I SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan C SHEFFIELD, Neerjah SKANTHARAJAH, Albert V SMITH, Heidi J SOFIA, Dylan SPALDING, Amanda B SPURDLE, Zornitza STARK, Lincoln D STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan A TEDDS, Alastair A THOMSON, Adrian THOROGOOD, Timothy L TICKLE, Katsushi TOKUNAGA, Juha TOMROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman Valls GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya F VEARS, Coby VINER, Craig VOISIN, Alex H WAGNER, Susan E WALLACE, Brian P WALSH, Marc S WILLIAMS, Eva C WINKLER, Barbara J WOLD, Grant M WOOD, J Patrick WOOLLEY, Chisato YAMASAKI, Andrew D YATES, Christina K YUNG, Lyndon J ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH and Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. AMSTERDAM: Cell Press, 2021, vol. 1, No 2, p. 1-33. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100029.

REHM, Heidi, Angela PAGE, Lindsay SMITH, Jeremy ADAMS, Gil ALTEROVITZ, Lawrence BABB, Maxmillian BARKLEY, Michael BAUDIS, Michael BEAUVAIS, Tim BECK, Jacques BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James BONFIELD, Tiffany BOUGHTWOOD, Guillaume BOURQUE, Sarion BOWERS, Anthony BROOKES, Michael BRUDNO, Matthew BRUSH, David BUJOLD, Tony BURDETT, Orion BUSKE, Moran CABILI, Daniel CAMERON, Robert CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal CHAUDHARI, Shu Hui CHEN, Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley CLISSOLD, Robert COOK-DEEGAN, Mélanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert DAVIES, Danielle DENISKO, Megan DOERR, Lena DOLMAN, Edward DOVE, Jonathan DURSI, Stephanie DYKE, James EDDY, Karen EILBECK, Kyle ELLROTT, Susan FAIRLEY, Khalid FAKHRO, Helen FIRTH, Michael FITZSIMONS, Marc FIUME, Paul FLICEK, Ian FORE, Mallory FREEBERG, Robert FREIMUTH, Lauren FROMONT, Jonathan FUERTH, Clara GAFF, Weiniu GAN, Elena GHANAIM, David GLAZER, Robert GREEN, Malachi GRIFFITH, Obi GRIFFITH, Robert GROSSMAN, Tudor GROZA, Jaime Guidry AUVIL, Roderic GUIGÓ, Dipayan GUPTA, Melissa HAENDEL, Ada HAMOSH, David HANSEN, Reece HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele HENDRICKS-STURRUP, Calvin HO, Ashley HOBB, Michael HOFFMAN, Oliver HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah HUNT, Ammar HUSAMI, Julius JACOBSEN, Saumya JAMUAR, Elizabeth JANES, Francis JEANSON, Aina JENÉ, Amber JOHNS, Yann JOLY, Steven JONES, Alexander KANITZ, Kazuto KATO, Thomas KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha KNOPPERS, Melissa KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke LUCASSEN, Michael LUKOWSKI, Alice MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard MILNE, Fruzsina MOLNÁR-GÁBOR, Nicola MULDER, Monica MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi NYRÖNEN, O Connor BRIAN, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura PAGLIONE, Emilio PALUMBO, Helen PARKINSON, Anthony PHILIPPAKIS, Angel PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee RIDER, Peter ROBINSON, Kurt RODARMER, Laura Lyman RODRIGUEZ, Alan RUBIN, Manuel RUEDA, Gregory RUSHTON, Rosalyn RYAN, Gary SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan SHEFFIELD, Neerjah SKANTHARAJAH, Albert SMITH, Heidi SOFIA, Dylan SPALDING, Amanda SPURDLE, Zornitza STARK, Lincoln STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan TEDDS, Alastair THOMSON, Adrian THOROGOOD, Timothy TICKLE, Katsushi TOKUNAGA, Juha TÖRNROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman VALLS GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya VEARS, Coby VINER, Craig VOISIN, Alex WAGNER, Susan WALLACE, Brian WALSH, Marc WILLIAMS, Eva WINKLER, Barbara WOLD, Grant WOOD, Patrick WOOLLEY, Chisato YAMASAKI, Andrew YATES, Christina YUNG, Lyndon ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH and Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. Cell Press, 2021, vol. 2021, No 1, p. 1-9. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100029.

VOISIN, Craig, Mikael LINDEN, Stephanie DYKE, Sarion BOWERS, Pinar ALPER, Maxmillian BARKLEY, David BERNICK, Jianpeng CHAO, Mélanie COURTOT, Francis JEANSON, Melissa KONOPKO, Martin KUBA, Jonathan LAWSON, Jaakko LEINONEN, Stephanie LI, Vivian WANG, Anthony PHILIPPAKIS, Kathy REINOLD, Gregory RUSHTON, J. Dylan SPALDING, Juha TÖRNROOS, Ilya TULCHINSKY, Jaime M. Guidry AUVIL and Tommi NYRÖNEN. GA4GH Passport standard for digital identity and access permissions. Cell Genomics. Elsevier, 2021, vol. 1, No 2, p. "100030", 16 pp. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100030.

CIOROAICA, Emilia, Akanksha PUROHIT, Barbora BÜHNOVÁ and Daniel SCHNEIDER. Goals within Trust-based Digital Ecosystems. In SESoS/WDES 2021, the joint 9th International Workshop on Software Engineering for Systems-of-Systems (SESoS) and the 15th Workshop on Distributed Software Development, Software Ecosystems and Systems-of-Systems (WDES). USA: IEEE, 2021, p. 1-7. ISBN 978-1-6654-4561-0. Available from: https://dx.doi.org/10.1109/SESoS-WDES52566.2021.00006.

DODA, M., Matej PIVOLUSKA and Martin PLESCH. Choice of mutually unbiased bases and outcome labeling affecting measurement outcome secrecy. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 3, p. 032206-32213. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.032206.

MACÁK, Martin, Štefan BOJNÁK and Barbora BÜHNOVÁ. Identification of Unintentional Perpetrator Attack Vectors using Simulation Game: A Case Study. Online. In Proceedings of the 16th Conference on Computer Science and Intelligence Systems. New York: IEEE, 2021, p. 349-356. ISBN 978-83-959183-8-4. Available from: https://dx.doi.org/10.15439/2021F85.

S. SORZANO, Carlos Oscar, Amaya JIMÉNEZ-MORENO, David MALUENDA, Erney RAMÍREZ-APORTELA, Marta MARTÍNEZ, Ana CUERVO, Roberto MELERO, Jose Javier CONESA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Jiří FILIPOVIČ, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Pablo CONESA, Laura DEL CAÑO, Yunior FONSECA, Jorge JIMÉNEZ DE LA MORENA, Jose Ramon MACÍAS, Patricia LOSANA, Roberto MARABINI and Jose-Maria CARAZO. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods. In Structural Proteomics. Clifton, N.J.: Springer US, 2021, p. 257-289. Methods in Molecular Biology. ISBN 978-1-0716-1405-1. Available from: https://dx.doi.org/10.1007/978-1-0716-1406-8_13.

ŽEŽULKA, Miloslav, Ondřej CHALOUPKA and Bruno ROSSI. Integrating Distributed Tracing into the Narayana Transaction Manager. Online. In International Conference on Complexity, Future Information Systems and Risk (Complexis 2021). Setúbal, Portugal: SciTePress, 2021, p. 55-62. ISBN 978-989-758-505-0. Available from: https://dx.doi.org/10.5220/0010448200550062.

ANTONIADES, Athos, Maria PAPAIOANNOU, Apostolos MALATRAS, Gregory PAPAGREGORIOU, Heimo MULLER, Petr HOLUB, Constantinos DELTAS and Christos N SCHIZAS. Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Online. Frontiers in Digital Health. 2021.

WITTNER, Rudolf, Petr HOLUB, Heimo MÜLLER, Joerg GEIGER, Carole GOBLE, Stian SOILAND-REYES, Luca PIREDDU, Francesca FREXIA, Cecilia MASCIA, Elliot FAIRWEATHER, Jason R SWEDLOW, Josh MOORE, Caterina STRAMBIO, David GRUNWALD and Hiroki NAKAE. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data. In Lecture Notes in Computer Science. Cham: Springer, 2021, p. 222-225. ISBN 978-3-030-80959-1. Available from: https://dx.doi.org/10.1007/978-3-030-80960-7_16.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK, Jana HOZZOVÁ and Richard TREMBECKÝ. Kernel Tuning Toolkit 2.0. 2021.

ANTOL, Matej, Jaroslav OĽHA, Terézia SLANINÁKOVÁ and Vlastislav DOHNAL. Learned metric index - proposition of learned indexing for unstructured data. Information Systems. Elsevier, 2021, vol. 100, No 101774, p. 1-12. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2021.101774.

ANTOL, Matej, Miriama JÁNOŠOVÁ and Vlastislav DOHNAL. Metric hull as similarity-aware operator for representing unstructured data. Pattern Recognition Letters. Amsterdam: Elsevier, 2021, vol. 149, September 2021, p. 91-98. ISSN 0167-8655. Available from: https://dx.doi.org/10.1016/j.patrec.2021.05.011.

NEUMANN, S.P., T. SCHEIDL, M. SELIMOVIC, Matej PIVOLUSKA, B. LIU, M. BOHMANN and R. URSIN. Model for optimizing quantum key distribution with continuous-wave pumped entangled-photon sources. Physical review A. New York: The American Physical Society, 2021, vol. 104, No 2, p. 022406-22416. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.104.022406.

BLANCO SÁNCHEZ, José Miguel, Mouzhi GE and Tomáš PITNER. Modeling Inconsistent Data for Reasoners in Web of Things. Online. In Procedia Computer Science, Volume 192, 25th KES International Conference on Knowledge-Based and Intelligent Information and Engineering Systems, KES 2021. Szczecin: Elsevier, 2021, p. 1265-1273. ISSN 1877-0509. Available from: https://dx.doi.org/10.1016/j.procs.2021.08.130.

SEHNAL, David, S. BITTRICH, M. DESHPANDE, Radka SVOBODOVÁ, K. BERKA, V. BAZGIER, S. VELANKAR, S.K. BURLEY, Jaroslav KOČA and A.S. ROSE. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic acids research. Oxford: Oxford University Press, 2021, vol. 49, W1, p. "W431"-"W437", 7 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkab314.

FAIRWEATHER, Elliot, Rudolf WITTNER, Martin CHAPMAN, Petr HOLUB and Vasa CURCIN. Non-repudiable provenance for clinical decision support systems. In Lecture Notes in Computer Science. Cham: Springer, 2021, p. 165-182. ISBN 978-3-030-80959-1. Available from: https://dx.doi.org/10.1007/978-3-030-80960-7_10.

SCHINDLER, Ondřej, Tomáš RAČEK, Aleksandra MARŠAVELSKI, Jaroslav KOČA, Karel BERKA and Radka SVOBODOVÁ. Optimized SQE atomic charges for peptides accessible via a web application. Journal of Cheminformatics. Chemistry Central Ltd. in association with BioMed Central, 2021, vol. 13, No 1, p. 45-55. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-021-00528-w.

SCHINDLER, Ondřej, Tomáš RAČEK, Aleksandra MARŠAVELSKI, Radka SVOBODOVÁ and Jaroslav KOČA. Partial atomic charges for proteins. In 1st Student Conference in Structural Biology, 2021. 2021.

HU, X.M., C. ZHANG, Y. GUO, F.X. WANG, W.B. XING, C.X. HUANG, B.H. LIU, Y.F. HUANG, C.F. LI, G.C. GUO, X.Q. GAO, Matej PIVOLUSKA and M. HUBER. Pathways for Entanglement-Based Quantum Communication in the Face of High Noise. Physical Review Letters. COLLEGE PK: The American Physical Society, 2021, vol. 127, No 11, p. 1-7. ISSN 0031-9007. Available from: https://dx.doi.org/10.1103/PhysRevLett.127.110505.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ and Karel BERKA. QM-like partial atomic charges for proteins available online. In ELIXIR CZ Annual Conference 2021. 2021. ISBN 978-80-86241-67-8.

DODA, M., M. HUBER, G. MURTA, Matej PIVOLUSKA, Martin PLESCH and C. VLACHOU. Quantum Key Distribution Overcoming Extreme Noise: Simultaneous Subspace Coding Using High-Dimensional Entanglement. PHYSICAL REVIEW APPLIED. COLLEGE PK: AMER PHYSICAL SOC, 2021, vol. 15, No 3, p. 034003-34017. ISSN 2331-7019. Available from: https://dx.doi.org/10.1103/PhysRevApplied.15.034003.

BANGUI, Hind and Barbora BÜHNOVÁ. Recent Advances in Machine-Learning Driven Intrusion Detection in Transportation: Survey. Online. In Shakshuki, E; Yasar, A. The 11th International Symposium on Frontiers in Ambient and Mobile Systems. Warsaw, Poland: Elsevier Science, 2021, p. 877-886. ISSN 1877-0509. Available from: https://dx.doi.org/10.1016/j.procs.2021.04.014.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Sérgio Manuel MARQUES, Jiří FILIPOVIČ, David BEDNÁŘ and Jiří DAMBORSKÝ. Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2021, vol. 19, May, p. 3187-3197. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2021.05.043.

HOZZOVÁ, Jana, Jiří FILIPOVIČ, Amin NEZARAT, Jaroslav OĽHA and Filip PETROVIČ. Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. Data in Brief. Elsevier, 2021, vol. 39, December, p. 1-12. ISSN 2352-3409. Available from: https://dx.doi.org/10.1016/j.dib.2021.107631.

PIVOLUSKA, Matej, Martin PLESCH, M. FARKAS, Natália RUŽIČKOVÁ, C. FLEGEL, N.H. VALENCIA, W. MCCUTCHEON, M. MALIK and EA AGUILAR. Semi-device-independent random number generation with flexible assumptions. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2021, vol. 7, No 1, p. 1-12. ISSN 2056-6387. Available from: https://dx.doi.org/10.1038/s41534-021-00387-1.

MÍČ, Vladimír, Tomáš RAČEK, Aleš KŘENEK and Pavel ZEZULA. Similarity Search for an Extreme Application: Experience and Implementation. In Nora Reyes, Richard Connor, Nils Kriege, Daniyal Kazempour, Ilaria Bartolini, Erich Schubert, Jian-Jia Chen. Similarity Search and Applications: 14th International Conference, SISAP 2021, Dortmund, Germany, September 29 - October 1, 2021, Proceedings. Cham: Springer, 2021, p. 265-279. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_20.

HOZZOVÁ, Jana, Ondřej VÁVRA, David BEDNÁŘ and Jiří FILIPOVIČ. Simulation of Ligand Transport in Receptors Using CaverDock. In Flavio Ballante. Protein-Ligand Interactions and Drug Design. New York: Humana, New York, NY, 2021, p. 105-124. Methods in Molecular Biology, vol 2266. ISBN 978-1-0716-1208-8. Available from: https://dx.doi.org/10.1007/978-1-0716-1209-5_6.

SIEGL, František, Marek VEČEŘA, Karolína TRACHTOVÁ, Dagmar AL TUKMACHI, Petr BUŠEK, Pavel FADRUS, Ondřej SLABÝ and Jiří ŠÁNA. Studium PIWI-interagujících RNA v rámci patologie glioblastomu - nová úroveň regulace glioblastomových kmenových buněk? (Studying PIWI-interacting RNAs in glioblastoma pathology - a new level of regulation of glioblastoma stem cells?). In XLV. Brněnské onkologické dny. XXXV. Konference pro nelékařské zdravotnické pracovníky Laboratorní diagnostika v onkologii 2021. 2021.

SIEGL, František, Marek VEČEŘA, Karolína TRACHTOVÁ, Dagmar AL TUKMACHI, Petr BUŠEK, Pavel FADRUS, Martin SMRČKA, Ondřej SLABÝ and Jiří ŠÁNA. Study of PIWI-Interacting RNAs in the pathology of glioblastoma: a new level of glioblastoma stem cell regulation? In Sborník abstrakt – VII. Sjezd Ukrajinské neurochirurgické společnosti. 2021.

LAWSON, Jonathan, Moran N CABILI, Giselle KERRY, Tiffany BOUGHTWOOD, Adrian THOROGOOD, Pinar ALPER, Sarion R BOWERS, Rebecca R BOYLES, Anthony J BROOKES, Matthew BRUSH, Tony BURDETT, Hayley CLISSOLD, Stacey DONNELLY, Stephanie O M DYKE, Mallory A FREEBERG, Melissa A HAENDEL, Chihiro HATA, Petr HOLUB, Francis JEANSON, Aina JENE, Minae KAWASHIMA, Shuichi KAWASHIMA, Melissa KONOPKO, Irene KYOMUGISHA, Haoyuan LI, Mikael LINDEN, Laura Lyman RODRIGUEZ, Mizuki MORITA, Nicola MULDER, Jean MULLER, Satoshi NAGAIE, Jamal NASIR, Soichi OGISHIMA, Vivian Ota WANG, Laura D PAGLIONE, Ravi N PANDYA, Helen PARKINSON, Anthony A PHILIPPAKIS, Fabian PRASSER, Jordi RAMBLA, Kathy REINOLD, Gregory A RUSHTON, Andrea SALTZMAN, Gary SAUNDERS, Heidi J SOFIA, John D SPALDING, Morris A SWERTZ, Ilia TULCHINSKY, J ESTHER, van ENCKEVORT, Susheel VARMA, Craig VOISIN, Natsuko YAMAMOTO, Chisato YAMASAKI, Lyndon ZASS, M JAIME, Guidry AUVIL, Tommi H NYRÖNEN and Mélanie COURTOT. The Data Use Ontology to streamline responsible access to human biomedical datasets. Cell Genomics. 2021, vol. 1, No 2, p. 1-9, 12 pp. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100028.

FARIA ZENI, Pedro, Michaela MEDKOVÁ, Karolína TRACHTOVÁ, Václav ŠEDA, Sonali SHARMA, Josef VEČEŘA, Laura ONDRIŠOVÁ, Miroslav BOUDNÝ, Veronika PALUŠOVÁ, Veronika ŠANDOVÁ, Daniel FILIP, Lenka KOŠŤÁLOVÁ and Marek MRÁZ. The role of long non-coding RNAs in the BCR-mediated activation of malignant B cells. In Ceitec PhD Conference. 2021.

BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ and Le Hong TRANG. Towards Faster Big Data Analytics for Anti-Jamming Applications in vehicular ad-hoc network. Transactions on Emerging Telecommunications Technologies. ENGLAND: WILEY, 2021, vol. 32, No 10, p. 1-18. ISSN 2161-3915. Available from: https://dx.doi.org/10.1002/ett.4280.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Trust-based Authentication for Smart Home Systems. Wireless Personal Communications. Springer, 2021, vol. 117, No 3, p. 2157-2172. ISSN 0929-6212. Available from: https://dx.doi.org/10.1007/s11277-020-07965-0.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Trust-based Detection Strategy against Replication Attacks in IoT. Online. In Makoto Takizawa, Leonard Barolli, Donald Elmazi. The 35th International Conference on Advanced Information Networking and Applications (AINA-2021). Springer International Publi. Toronto, Canada: Springer, 2021, p. 646-656. ISBN 978-3-030-75074-9. Available from: https://dx.doi.org/10.1007/978-3-030-75075-6_53.

MIDLIK, Adam, Veronika NAVRÁTILOVÁ, Tarakaramji MOTURU, Jaroslav KOČA, Radka SVOBODOVÁ and K. BERKA. Uncovering of cytochrome P450 anatomy by SecStrAnnotator. Nature Scientific Reports. London: NATURE RESEARCH, 2021, vol. 11, No 1, p. 12345-12356. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-021-91494-8.

MACÁK, Martin, Daniela KRÚŽELOVÁ, Stanislav CHREN and Barbora BÜHNOVÁ. Using Process Mining for Git Log Analysis of Projects in a Software Development Course. Education and Information Technologies. 2021, vol. 26, No 5, p. 5939-5969. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-021-10564-6.

ČEGAN, Jakub, Tomáš KACVINSKÝ, Zdeněk VYDRA, Martin LEBEDA, Jakub Bartolomej KOŠUTH, Petr VELAN, Milan ČERMÁK, Andrej TOMČI, Ivo NUTÁR, Martin LAŠTOVIČKA, Natálie VELECKÁ, Pavla VIZVÁRY, Vojtěch HAMERSKÝ, Daniel KOUŘIL, Ondřej BUDAY, Martin KOTLÍK, Vladimír ROHEL, Jiří SÝKORA, Michal ZVÁNOVEC, Filip GRÉGR and Petr SLAVÍK. Virtualizované prostředí pro trénink CSIRT týmu (Virtual environment for training of the CSIRT teams). 2021.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK and Otto DOSTÁL. Zero Watermarking: Critical Analysis of Its Role in Current Medical Imaging. Journal of Digital Imaging. 2021, vol. 34, No 1, p. 204-211. ISSN 0897-1889. Available from: https://dx.doi.org/10.1007/s10278-020-00396-0.

HUTAŘOVÁ VAŘEKOVÁ, Ivana, Jan HUTAŘ, Adam MIDLIK, Vladimír HORSKÝ, Eva HLADKÁ, Radka SVOBODOVÁ and Karel BERKA. 2DProts: database of family-wide protein secondary structure diagrams. Bioinformatics. Oxford University Press, 2021, vol. 37, No 23, p. 4599-4601. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btab505.

BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS and Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.

PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER and Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, vol. 108, July, p. 161-177. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2020.02.069.

MACÁK, Martin, Mouzhi GE and Barbora BÜHNOVÁ. A Cross-domain Comparative Study of Big Data Architectures. International Journal of Cooperative Information Systems. 2020, vol. 29, No 4, p. 1-27. ISSN 0218-8430. Available from: https://dx.doi.org/10.1142/S0218843020300016.

ROSSI, Bruno. A Large-Scale Replication of Smart Grids Power Consumption Anomaly Detection. Online. In Gary Wills, Péter Kacsuk, and Victor Chang. Proceedings of the 5th International Conference on Internet of Things, Big Data and Security (IoTBDS). Setubal, Portugal: SciTePress, 2020, p. 288-295. ISBN 978-989-758-426-8. Available from: https://dx.doi.org/10.5220/0009396402880295.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. An Efficient Mutual Authentication Scheme for Internet of Things. Internet of Things Journal. ELSEVIER, 2020, vol. 9, No 1, p. 1-9. ISSN 2543-1536. Available from: https://dx.doi.org/10.1016/j.iot.2020.100160.

MBAREK, Bacem, Stanislav CHREN, Bruno ROSSI and Tomáš PITNER. An Enhanced Blockchain-Based Data Management Scheme for Microgrids. Online. In Barolli, L., Amato, F., Moscato, F., Enokido, T., Takizawa, M. Web, Artificial Intelligence and Network Applications (WAINA 2020). Caserta, Italy: Springer International Publishing, 2020, p. 766-775. ISBN 978-3-030-44037-4. Available from: https://dx.doi.org/10.1007/978-3-030-44038-1_70.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Daniel TOVARŇÁK, Pavel ZEZULA, Martin MACÁK, Matúš GUOTH, Matej BABEJ, Dávid BRILLA and Martin KAŽIMÍR. ANALYZA – Datový sklad (ANALYZA – Dara Warehouse). 2020.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA and Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant). 2020.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Barbora KOZLÍKOVÁ, Vladimír MÍČ, Filip NÁLEPA, David NOVÁK, Daniel TOVARŇÁK, Pavel ZEZULA, Jakub PESCHEL, Kasanič DENIS, Denisa ŠRÁMKOVÁ, Erik HRICIŠÁK, Vladimír LAZÁRIK and Kristián GUTIČ. ANALYZA – Výpočetní a orchestrační subsystém (ANALYZA – Computation and Orchestration Subsystem). 2020.

LHOTÁK, Marin, Martin DUDA, Andrea FOJTŮ, Jan HEJZL, Jan HUTAŘ, Filip KERSCH, Jana KŘÍŽOVÁ, Marek MELICHAR, Martina NEZBEDOVÁ, Miroslav PAVELKA, Eliška PAVLÁSKOVÁ, Jan POKORSKÝ, Michal PŠENIČKA, Ivana ŠLAPÁKOVÁ, Zdeněk TICHÝ, Miroslav BARTOŠEK, Jan BILWACHS, Lukáš HEJTMÁNEK, Zdeněk HRUŠKA, Václav JIROUŠEK, Pavlína KOČIŠOVÁ, Vlastimil KREJČÍŘ, Iveta LODROVÁ, Natalie OSTRÁKOVÁ, Michal RŮŽIČKA, Zdeněk VAŠEK and Petr ŽABIČKA. ARCLib. 2020.

GEŠVINDR, David, Ondřej GASIOR and Barbora BÜHNOVÁ. Architecture design evaluation of PaaS cloud applications using generated prototypes: PaaSArch Cloud Prototyper tool. Journal of Systems and Software. Elsevier, 2020, vol. 169, November, p. 1-21. ISSN 0164-1212. Available from: https://dx.doi.org/10.1016/j.jss.2020.110701.

RAČEK, Tomáš, Ondřej SCHINDLER, Dominik TOUŠEK, Vladimír HORSKÝ, Karel BERKA, Jaroslav KOČA and Radka SVOBODOVÁ. Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic acids research. Oxford: Oxford University Press, 2020, vol. 48, W1, p. "W591"-"W596", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkaa367.

DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK and Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.

HOLUB, Petr, Lukasz KOZERA, Francesco FLORINDI, Esther van ENCKEVORT, Morris SWERTZ, Robert REIHS, Andrea WUTTE, Dalibor VALÍK and Michaela Th MAYRHOFER. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19. European Journal of Human Genetics. London: Nature Publishing Group, 2020, vol. 28, No 6, p. 728-731. ISSN 1018-4813. Available from: https://dx.doi.org/10.1038/s41431-020-0634-8.

MACÁK, Martin, Hind BANGUI, Barbora BÜHNOVÁ, András J. MOLNÁR and Csaba István SIDLÓ. Big Data Processing Tools Navigation Diagram. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Setubal, Portugal: SciTePress, 2020, p. 304-312. ISBN 978-989-758-426-8. Available from: https://dx.doi.org/10.5220/0009406403040312.

SEHNAL, David, Sebastian BITTRICH, Sameer VELANKAR, Jaroslav KOČA, Radka SVOBODOVÁ, Stephen K. BURLEY and Alexander S. ROSE. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PLoS Computational Biology. San Francisco: Public Library of Science, 2020, vol. 16, No 10, p. 1-13. ISSN 1553-734X. Available from: https://dx.doi.org/10.1371/journal.pcbi.1008247.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Blockchain-based Access Control for IoT in Smart Home Systems. Online. In Proceedings of the 31st International Conference on Database and Expert Systems Applications - DEXA 2020. Bratislava, Slovakia: Springer, 2020, p. 17-32. ISBN 978-3-030-59050-5. Available from: https://dx.doi.org/10.1007/978-3-030-59051-2_2.

CIOROAICA, Emilia, Barbora BÜHNOVÁ, Thomas KUHN and Daniel SCHNEIDER. Building trust in the untrustable. Online. In Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering: Software Engineering in Society. USA: ACM, 2020, p. 21-24. ISBN 978-1-4503-7125-4. Available from: https://dx.doi.org/10.1145/3377815.3381378.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, vol. 17, No 5, p. 1625-1638. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2019.2907492.

ISON, Jon, Hervé MÉNAGER, Brancotte BRYAN, Erik JAANISO, Ahto SALUMETS, Tomáš RAČEK, Anna-Lena LAMPRECHT, Magnus PALMBLAD, Matúš KALAŠ, Piotr CHMURA, John M HANCOCK, Veit SCHWÄMMLE and Hans-Ioan IENASESCU. Community curation of bioinformatics software and data resources. Briefings in Bioinformatics. Oxford University Press, 2020, vol. 21, No 5, p. 1697-1705. ISSN 1467-5463. Available from: https://dx.doi.org/10.1093/bib/bbz075.

STREČANSKÝ, Peter, Stanislav CHREN and Bruno ROSSI. Comparing Maintainability Index, SIG Method, and SQALE for Technical Debt Identification. Scientific programming. Hindawi, 2020, vol. 2020, 20 Jul 2020, p. 1-14. ISSN 1058-9244. Available from: https://dx.doi.org/10.1155/2020/2976564.

STREČANSKÝ, Peter, Stanislav CHREN and Bruno ROSSI. Comparing Maintainability Index, SIG Method, and SQALE for Technical Debt Identification. In 35th ACM/SIGAPP Symposium On Applied Computing. Brno, Czech Republic: ACM, 2020, p. 121-124. ISBN 978-1-4503-6866-7. Available from: https://dx.doi.org/10.1145/3341105.3374079.

JAVORNÍK, Michal, Jana KOMÁRKOVÁ, Lukáš SADLEK and Martin HUSÁK. Decision Support for Mission-Centric Network Security Management. Online. In NOMS 2020 - 2020 IEEE/IFIP Network Operations and Management Symposium. Budapest, Hungary: IEEE, 2020, p. 1-6. ISBN 978-1-7281-4973-8. Available from: https://dx.doi.org/10.1109/NOMS47738.2020.9110261.

YANG, Qishan, Mouzhi GE and Markus HELFERT. Developing Reliable Taxonomic Features for Data Warehouse Architectures. Online. In Proceedings of the 22nd IEEE International Conference on Business Informatics - CBI 2020. Antwerp, Belgium: IEEE, 2020, p. 241-249. ISBN 978-1-7281-9926-9. Available from: https://dx.doi.org/10.1109/CBI49978.2020.00033.

GE, Mouzhi and Wlodzimierz LEWONIEWSKI. Developing the Quality Model for Collaborative Open Data. Online. In Proceedings of the 24th International Conference on Knowledge-Based and Intelligent Information and Engineering Systems - KES 2020. 176th ed. Verona, Italy: Elsevier Procedia Computer Science, 2020, p. 1883-1892. ISSN 1877-0509. Available from: https://dx.doi.org/10.1016/j.procs.2020.09.228.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Enhanced Network Intrusion Detection System Protocol for Internet of Things. Online. In Proceedings of the 35th ACM/SIGAPP Symposium On Applied Computing. Brno, Czech Republic: ACM Publishing, 2020, p. 1156-1163. ISBN 978-1-4503-6866-7. Available from: https://dx.doi.org/10.1145/3341105.3373867.

CATCHPOOLE, Daniel R, Francesco FLORINDI, Caitlin AHERN, Debra Leiolani GARCIA, Piper MULLINS, Esther Van ENCKEVORT, Andy ZAAYENGA, Michaela Th MAYRHOFER and Petr HOLUB. Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19–Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER. Biopreservation and Biobanking. 2020, vol. 18, No 5, p. 479-480. Available from: https://dx.doi.org/10.1089/bio.2020.29075.drc.

HU, Xiao-Min, WB. XING, C. ZHANG, BH. LIU, Matej PIVOLUSKA, M. HUBER, YF. HUANG, CF. LI and GC. GUO. Experimental creation of multi-photon high-dimensional layered quantum states. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2020, vol. 6, No 1, p. 1-5. ISSN 2056-6387. Available from: https://dx.doi.org/10.1038/s41534-020-00318-6.

OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK and Jiří FILIPOVIČ. Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE. HOBOKEN: WILEY, 2020, vol. 32, No 21, p. 1-15. ISSN 1532-0626. Available from: https://dx.doi.org/10.1002/cpe.5962.

BERAN, Michal, František HRDINA, Daniel KOUŘIL, Radek OŠLEJŠEK and Kristína ZÁKOPČANOVÁ. Exploratory Analysis of File System Metadata for Rapid Investigation of Security Incidents. Online. In 2020 IEEE Symposium on Visualization for Cyber Security (VizSec). Salt Lake City, US: IEEE, 2020, p. 11-20. ISBN 978-1-7281-8262-9. Available from: https://dx.doi.org/10.1109/VizSec51108.2020.00008.

ELAHI, Mehdi, Nabil EL IOINI, Anna LAMBRIX and Mouzhi GE. Exploring Personalized University Ranking and Recommendation. Online. In Proceedings of the 28th ACM Conference on User Modeling, Adaptation and Personalization - UMAP 2020. Genoa, Italy: ACM, 2020, p. 6-10. ISBN 978-1-4503-6711-0. Available from: https://dx.doi.org/10.1145/3386392.3397590.

KŘENEK, Aleš, Jana HOZZOVÁ, Jaroslav OĽHA, Dalibor TRAPL and Vojtěch SPIWOK. Exploring Protein Folding Space with Neural Network Guided Simulations. In Alexandre Nketsa. MODELLING AND SIMULATION 2020. Brusel: EUROSIS-ETI, 2020, p. 305-309. ISBN 978-94-92859-12-9.

STŘELÁK, David, Jiří FILIPOVIČ, Amaya JIMÉNEZ-MORENO, Jose María CARAZO and Carlos Óscar SÁNCHEZ SORZANO. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy. Electronics. Switzerland: MDPI, 2020, vol. 9, No 6, p. 1-25. ISSN 2079-9292. Available from: https://dx.doi.org/10.3390/electronics9061040.

BÜHNOVÁ, Barbora and Lucia HAPPE. Girl-Friendly Computer Science Classroom: Czechitas Experience Report. Online. In European Conference on Software Architecture. Neuveden: Springer, 2020, p. 125-137. ISBN 978-3-030-59154-0. Available from: https://dx.doi.org/10.1007/978-3-030-59155-7_10.

VALENCIA, N.H., V. SRIVASTAV, Matej PIVOLUSKA, M. HUBER, N. FRIIS, W. MCCUTCHEON and M. MALIK. High-Dimensional Pixel Entanglement: Efficient Generation and Certification. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2020, vol. 4, December, p. 376-394. ISSN 2521-327X. Available from: https://dx.doi.org/10.22331/q-2020-12-24-376.

SEHNAL, David, Radka SVOBODOVÁ, Karel BERKA, Alexander S. ROSE, Stephen K. BURLEY, Sameer VELANKAR and Jaroslav KOČA. High-performance macromolecular data delivery and visualization for the web. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2020, vol. 76, December 2020, p. 1167-1173. ISSN 2059-7983. Available from: https://dx.doi.org/10.1107/S2059798320014515.

MACÁK, Martin, Matúš ŠTOVČIK, Barbora BÜHNOVÁ and Michal MERJAVÝ. How well a multi-model database performs against its single-model variants: Benchmarking OrientDB with Neo4j and MongoDB. Online. In Proceedings of the 2020 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2020, p. 463-470. ISBN 978-83-955416-7-4. Available from: https://dx.doi.org/10.15439/2020F76.

GABŁO, Natalia Anna, Karolína TRACHTOVÁ, Vladimír PROCHÁZKA, Jan HLAVSA, Tomáš GROLICH, Igor KISS, Josef SROVNAL, Alona REHULKOVA, Martin LOVECEK, Pavel SKALICKY, Ioana BERINDAN-NEAGOE, Zdeněk KALA and Ondřej SLABÝ. Identification and Validation of Circulating Micrornas as Prognostic Biomarkers in Pancreatic Ductal Adenocarcinoma Patients Undergoing Surgical Resection. Journal of Clinical Medicine. BASEL: MDPI, 2020, vol. 9, No 8, p. 1-12. ISSN 2077-0383. Available from: https://dx.doi.org/10.3390/jcm9082440.

BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. Improving Big Data Clustering for Jamming Detection in Smart Mobility. Online. In Proceedings of the 35th International Conference on ICT Systems Security and Privacy Protection - IFIP SEC. Maribor, Slovenia: Springer IFIP AICT series, 2020, p. 78-91. ISBN 978-3-030-58200-5. Available from: https://dx.doi.org/10.1007/978-3-030-58201-2_6.

PERSIA, Fabio, Daniela D'AURIA and Mouzhi GE. Improving Learning System Performance with Multimedia Semantics. Online. In Proceedings of the 14th IEEE International Conference on Semantic Computing. San Diego, California, USA: IEEE, 2020, p. 238-241. ISBN 978-1-7281-6332-1. Available from: https://dx.doi.org/10.1109/ICSC.2020.00050.

PERSIA, Fabio, Giovanni PILATO, Mouzhi GE, Paolo BOLZONI, Daniela D'AURIA and Helmer SVEN. Improving Orienteering-based Tourist Trip Planning with Social Sensing. Future Generation Computer Systems. Elsevier, 2020, vol. 110, No 1, p. 931-945. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2019.10.028.

HRUBÁ, Marika. Library advocacy ve vysokoškolské knihovně. 2020.

MACHÁČKOVÁ, Táňa, Petra VYCHYTILOVÁ, Kamila SOUČKOVÁ, Karolína TRACHTOVÁ, Dominika BRCHNELOVÁ, Marek SVOBODA, Igor KISS, Vladimír PROCHÁZKA, Zdeněk KALA and Ondřej SLABÝ. MiR-215-5p Reduces Liver Metastasis in an Experimental Model of Colorectal Cancer through Regulation of ECM-Receptor Interactions and Focal Adhesion. Cancers. BASEL: MDPI, 2020, vol. 12, No 12, p. 1-21. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers12123518.

WALLETZKÝ, Leonard, Luca CARRUBBO, Angeliki Maria TOLI, Mouzhi GE and Františka ROMANOVSKÁ. Multi-contextual View to Smart City Architecture. In AHFE Virtual Conference on the Human Side of Service Engineering. San Diego, United States: Springer, 2020, p. 306-312. ISBN 978-3-030-51056-5. Available from: https://dx.doi.org/10.1007/978-3-030-51057-2_42.

FRIÁK, Martin, Dušan LAGO, Nikola KOUTNÁ, David HOLEC, Tomáš REBOK and Mojmír ŠOB. Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites. Computer Physics Communications. Amsterdam: Elsevier, 2020, vol. 247, FEB 2020, p. 1-9. ISSN 0010-4655. Available from: https://dx.doi.org/10.1016/j.cpc.2019.106863.

JELÍNEK, Kamil, Jan ŠLESINGER and Michal PROCHÁZKA. Právní aspekty sdílení dat v rámci informačních technologií konceptu Smart City v dopravě a jejich dopady do práva veřejných zakázek (xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx). 1st ed. Brno: Masarykova univerzita, Právnická fakulta, 2020, 91 pp. Edice Scientia, sv. 702. ISBN 978-80-210-9777-3.

DUDOVÁ, Zdenka, Dalibor VALÍK, Kristína GREPLOVÁ and Alice HÁLOVÁ. Představení BBMRI-CZ jako partnera pro výzkum v oblasti translační medicíny (Introduction of BBMRI-CZ as a research partner for the translational medicine). In 41. Imunoanalytické dny 2020. 2020. ISBN 978-80-88120-28-5.

CIOROAICA, Emilia, Stanislav CHREN, Barbora BÜHNOVÁ, Thomas KUHN and Dimitar DIMTROV. Reference Architecture for Trust-Based Digital Ecosystems. Online. In 2020 IEEE International Conference on Software Architecture Companion (ICSA-C). Salvador; Brazil: IEEE Press, 2020, p. 266-273. ISBN 978-1-7281-7415-0. Available from: https://dx.doi.org/10.1109/ICSA-C50368.2020.00051.

WALLETZKÝ, Leonard, Františka ROMANOVSKÁ, Angeliki Maria TOLI and Mouzhi GE. Research Challenges of Open Data as a Service for Smart Cities. Online. In Proceedings of the 10th International Conference on Cloud Computing and Services Science. Prague, Czech Republic: SCITEPRESS, 2020, p. 468-472. ISBN 978-989-758-424-4. Available from: https://dx.doi.org/10.5220/0009578604680472.

AHMAD, Parwez, Marek SLÁVIK, Karolína TRACHTOVÁ, Natalia Anna GABŁO, Tomáš KAZDA, Dominik GURÍN, Pavel SMILEK, Zuzana HORÁKOVÁ, Břetislav GÁL, Markéta HERMANOVÁ, Pavel ŠLAMPA, Jiří ŠÁNA and Ondřej SLABÝ. Salivary microRNAs identified by small RNA sequencing as potential predictors of response to intensity-modulated radiotherapy in head and neck cancer patients. CELLULAR ONCOLOGY. DORDRECHT: SPRINGER, 2020, vol. 43, No 3, p. 505-511. ISSN 2211-3428. Available from: https://dx.doi.org/10.1007/s13402-020-00507-7.

MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Self-adaptive RFID Authentication for Internet of Things. In Proceedings of the 33rd International Conference on Advanced Information Networking and Applications (AINA-2019). Matsue, Japan: Springer, Advances in Intelligent Systems and Computing, 2020, p. 1094-1105. ISBN 978-3-030-15031-0. Available from: https://dx.doi.org/10.1007/978-3-030-15032-7_92.

MAREK, Jiří. Seminář Open Science. 2020.

DRAGOICEA, Monica, Leonard WALLETZKÝ, Luca CARRUBBO, Nabil GEORGES BADR, Angeliki MARIA TOLI, Františka ROMANOVSKÁ and Mouzhi GE. Service Design for Resilience: A Multi-contextual Modeling Perspective. IEEE Access. IEEE, 2020, vol. 8, October, p. 185526-185543. ISSN 2169-3536. Available from: https://dx.doi.org/10.1109/ACCESS.2020.3029320.

MACÁK, Martin, Agáta KRUŽÍKOVÁ, Lukáš DAUBNER and Barbora BÜHNOVÁ. Simulation Games Platform for Unintentional Perpetrator Attack Vector Identification. Online. In ICSEW'20: Proceedings of the IEEE/ACM 42nd International Conference on Software Engineering Workshops. New York, NY, USA: Association for Computing Machinery, 2020, p. 222-229. ISBN 978-1-4503-7963-2. Available from: https://dx.doi.org/10.1145/3387940.3391475.

ROSSI, Bruno and Stanislav CHREN. Smart Grids Data Analysis: A Systematic Mapping Study. IEEE Transactions on Industrial Informatics. IEEE, 2020, vol. 16, No 6, p. 3619-3639. ISSN 1551-3203. Available from: https://dx.doi.org/10.1109/TII.2019.2954098.

SADLEK, Lukáš, Michal JAVORNÍK and Martin HUSÁK. Software pro podporu rozhodování při řešení bezpečnostního incidentu (Software for the decision support in the security incident handling). 2020.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ, Karel BERKA and Jaroslav KOČA. SQE charge calculation and its applicability for proteins. In ELIXIR CZ Annual Conference 2020. 2020. ISBN 978-80-86241-65-4.

MACÁK, Martin, Matúš ŠTOVČIK and Barbora BÜHNOVÁ. The Suitability of Graph Databases for Big Data Analysis: A Benchmark. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Neuveden: SciTePress, 2020, p. 213-220. ISBN 978-989-758-426-8. Available from: https://dx.doi.org/10.5220/0009350902130220.

MACÁK, Martin, Ivan VANÁT, Michal MERJAVÝ, Tomáš JEVOČIN and Barbora BÜHNOVÁ. Towards Process Mining Utilization in Insider Threat Detection from Audit Logs. Online. In 2020 Seventh International Conference on Social Networks Analysis, Management and Security (SNAMS). New York: IEEE, 2020, p. 250-255. ISBN 978-0-7381-1180-3. Available from: https://dx.doi.org/10.1109/SNAMS52053.2020.9336573.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ and Tomáš PITNER. Towards verifiable evidence generation in forensic-ready systems. Online. In 2020 IEEE International Conference on Big Data (Big Data). Atlanta, United States: IEEE, 2020, p. 2264-2269. ISBN 978-1-7281-6251-5. Available from: https://dx.doi.org/10.1109/BigData50022.2020.9378035.

MACHÁČKOVÁ, Táňa, Karolína TRACHTOVÁ, Vladimír PROCHÁZKA, Tomáš GROLICH, Martina FARKAŠOVÁ, Lukáš FIALA, Roman ŠEFR, Igor KISS, Matej SKROVINA, Michal DOSOUDIL, Ioana BERINDAN-NEAGOE, Marek SVOBODA, Ondřej SLABÝ and Zdeněk KALA. Tumor microRNAs Identified by Small RNA Sequencing as Potential Response Predictors in Locally Advanced Rectal Cancer Patients Treated With Neoadjuvant Chemoradiotherapy. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2020, vol. 17, No 3, p. 249-257. ISSN 1109-6535. Available from: https://dx.doi.org/10.21873/cgp.20185.

HRUBÁ, Marika. Úvod do library advocacy pro veřejné knihovny : e-learningový kurz. Online. 2020.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ and Tomáš PITNER. Verification of Forensic Readiness in Software Development: A Roadmap. Online. In Proceedings of the 35th Annual ACM Symposium on Applied Computing. New York, NY, USA: Association for Computing Machinery, 2020, p. 1658-1661. ISBN 978-1-4503-6866-7. Available from: https://dx.doi.org/10.1145/3341105.3374094.

SEHNAL, David, Radka SVOBODOVÁ, K. BERKA, Lukáš PRAVDA, Adam MIDLIK and Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2020, p. 1-13. 2112. ISBN 978-1-0716-0270-6. Available from: https://dx.doi.org/10.1007/978-1-0716-0270-6_1.

VODÁK, Rostislav, Michal BÍL, Tomáš SVOBODA, Zuzana KŘIVÁNKOVÁ, Jan KUBEČEK, Tomáš REBOK and Petr HLINĚNÝ. A deterministic approach for rapid identification of the critical links in networks. PLOS ONE. United States: Public Library of Science, 2019, vol. 14, No 7, p. 1-18. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0219658.

STŘELÁK, David, Carlos Óscar S. SORZANO, José María CARAZO and Jiří FILIPOVIČ. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. The International Journal of High Performance Computing Applications. SAGE Publishing, 2019, vol. 33, No 5, p. 948-959. ISSN 1094-3420. Available from: https://dx.doi.org/10.1177/1094342019832958.

BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. A Research Roadmap of Big Data Clustering Algorithms for Future Internet of Things. International Journal of Organizational and Collective Intelligence. IGI, 2019, vol. 9, No 2, p. 16-30. ISSN 1947-9344. Available from: https://dx.doi.org/10.4018/IJOCI.2019040102.

GE, Mouzhi, Fabio PERSIA and Daniela D'AURIA. Advanced Recommender Systems by Exploiting Social Networks. In Proceedings of the IEEE International Conference on Humanized Computing and Communication. Laguna Hills, CA, USA: IEEE, 2019, p. 118-125. ISBN 978-1-72814-125-1. Available from: https://dx.doi.org/10.1109/HCC46620.2019.00025.

QISHAN, Yang, Mouzhi GE and Markus HELFERT. Analysis of Data Warehouse Architectures: Modeling and Classification. In Proceedings of the 21st International Conference on Enterprise Information Systems. Crete, Greece: SciTePress, 2019, p. 604-611. ISBN 978-989-758-372-8. Available from: https://dx.doi.org/10.5220/0007728006040611.

SMRČKA, Martin, Alena KOPKOVÁ, Jiří ŠÁNA, Marek VEČEŘA, J OPPELT, Karolína TRACHTOVÁ, R JANČÁLEK, Pavel FADRUS and Ondřej SLABÝ. Analysis of microRNA levels in cerebrospinal fluid of patients with primary brain tumors and metastases. In 2019 WFNS Special World Congress, 9. – 12. 9. 2019, Peking, Čína. 2019.

BÜHNOVÁ, Barbora, Lucie JURYSTOVÁ and Dita PŘIKRYLOVÁ. Assisting women in career change towards software engineering: experience from Czechitas NGO. Online. In Proceedings of the 13th European Conference on Software Architecture - Volume 2. New York, NY, USA: ACM, 2019, p. 88-93. ISBN 978-1-4503-7142-1. Available from: https://dx.doi.org/10.1145/3344948.3344967.

RAČEK, Tomáš, Ondřej SCHINDLER, Vladimír HORSKÝ, Jaroslav KOČA, Dominik TOUŠEK and Radka SVOBODOVÁ VAŘEKOVÁ. AtomicChargeCalculator II. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

REBOK, Tomáš. Big Data - overview, basic concepts and practical use in research. In Alliance4Life 5th project meeting. 2019.

LIPČÁK, Peter, Martin MACÁK and Bruno ROSSI. Big Data Platform for Smart Grids Power Consumption Anomaly Detection. Online. In Proceedings of the 2019 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2019, p. 771-780. ISBN 978-1-5386-8005-6. Available from: https://dx.doi.org/10.15439/2019F210.

MÍČ, Vladimír, David NOVÁK and Pavel ZEZULA. Binary Sketches for Secondary Filtering. ACM Transactions on Information Systems. New York: ACM Press, 2019, vol. 37, No 1, p. "1:1"-"1:28", 28 pp. ISSN 1046-8188. Available from: https://dx.doi.org/10.1145/3231936.

ANTOL, Matej and Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, p. 337-353. ISBN 978-3-030-28729-0. Available from: https://dx.doi.org/10.1007/978-3-030-28730-6_21.

ŠTOURAČ, Jan, O. VAVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, Gabriela Filipa FONSECA PINTO, Andrea SCHENKMAYEROVÁ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport. In European Biotechnology Congress. 2019. ISSN 0168-1656. Available from: https://dx.doi.org/10.1016/j.jbiotec.2019.05.251.

ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, W1, p. 414-422. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz378.

VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.

KOPKOVÁ, Alena, Jiří ŠÁNA, Táňa MACHÁČKOVÁ, Marek VEČEŘA, Lenka RADOVÁ, Karolína TRACHTOVÁ, Václav VYBÍHAL, Martin SMRČKA, Tomáš KAZDA, Ondřej SLABÝ and Pavel FADRUS. Cerebrospinal Fluid MicroRNA Signatures as Diagnostic Biomarkers in Brain Tumors. Cancers. BASEL: MDPI, 2019, vol. 11, No 10, p. 1-12. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers11101546.

GE, Mouzhi, Stanislav CHREN, Bruno ROSSI and Tomáš PITNER. Data Quality Management Framework for Smart Grid Systems. Online. In Abramowicz W., Corchuelo R. Proceedings of the 22nd International Conference on Business Information Systems. Switzerland: Springer, 2019, p. 299-310. ISBN 978-3-030-20481-5. Available from: https://dx.doi.org/10.1007/978-3-030-20482-2_24.

JAVORNÍK, Michal, Jana KOMÁRKOVÁ and Martin HUSÁK. Decision Support for Mission-Centric Cyber Defence. Online. In Proceedings of the 14th International Conference on Availability, Reliability and Security (ARES 2019). New York: ACM, 2019, p. "34:1"-"34:8", 8 pp. ISBN 978-1-4503-7164-3. Available from: https://dx.doi.org/10.1145/3339252.3340522.

CAPUTO, Francesco, Vincenzo FORMISANO, Barbora BÜHNOVÁ and Leonard WALLETZKÝ. Depicting a Conceptual Framework for Smart City. World Review of Entrepreneurship, Management and Sustainable Development. Inderscience Publishers (IEL), 2019, vol. 15, No 3, p. 379-392. ISSN 1746-0573. Available from: https://dx.doi.org/10.1504/WREMSD.2019.099418.

GEŠVINDR, David, Barbora BÜHNOVÁ and Jaroslav DAVÍDEK. Design of Scalable and Resilient Applications using Microservice Architecture in PaaS Cloud. Online. In Proceedings of the 14th International Conference on Software Technologies - Volume 1: ICSOFT. Neuveden: SciTePress, 2019, p. 619-630. ISBN 978-989-758-379-7. Available from: https://dx.doi.org/10.5220/0007842906190630.

CIOROAICA, Emilia, Thomas KUHN and Barbora BÜHNOVÁ. (Do not) trust in ecosystems. Online. In Proceedings of the 41st International Conference on Software Engineering: New Ideas and Emerging Results. USA: IEEE Press, 2019, p. 9-12. ISBN 978-1-72811-758-4. Available from: https://dx.doi.org/10.1109/ICSE-NIER.2019.00011.

OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK and Jiří FILIPOVIČ. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps. In Ulrich Schwardmann, Christian Boehme, Dora B. Heras, Valeria Cardellini, Emmanuel Jeannot, Antonio Salis, Claudio Schifanella, Ravi Reddy Manumachu, Dieter Schwamborn, Laura Ricci, Oh Sangyoon, Thomas Gruber, Laura Antonelli, Stephen L. Scott. Lecture Notes in Computer Science. Cham, Switzerland: Springer, Cham, 2019, p. 295-307. ISBN 978-3-030-48339-5. Available from: https://dx.doi.org/10.1007/978-3-030-48340-1_23.

D'AURIA, Daniela, Mouzhi GE and Fabio PERSIA. Exploiting Recommender Systems in Collaborative Healthcare. In Proceedings of the 16th International Symposium on Pervasive Systems, Algorithms and Networks. Naples, Italy: Springer Communications in Computer and Information Science, 2019, p. 71-82. ISBN 978-3-030-30142-2. Available from: https://dx.doi.org/10.1007/978-3-030-30143-9_6.

WALLETZKÝ, Leonard, Luca CARRUBBO and Mouzhi GE. Exploring complex service design: Understanding the Diamonds of Context. Online. In Francesco Polese. Online Proceedings of Naples Forum on Service. Italy: University of Salerno, 2019.

GE, Mouzhi and Fabio PERSIA. Factoring Personalization in Social Media Recommendations. In Proceedings of the 13th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2019, p. 344-347. ISBN 978-1-5386-6783-5. Available from: https://dx.doi.org/10.1109/ICOSC.2019.8665624.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Jiří FILIPOVIČ, Jan ŠTOURAČ, David BEDNÁŘ and Jiří DAMBORSKÝ. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock. FRONTIERS IN CHEMISTRY. LAUSANNE: FRONTIERS MEDIA SA, 2019, vol. 7, OCT 29 2019, p. 1-14. ISSN 2296-2646. Available from: https://dx.doi.org/10.3389/fchem.2019.00709.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ, Mouzhi GE and Tomáš PITNER. Industrial Involvement In Information System Education: Lessons Learned from a Software Quality Course. Online. In Proceedings of 28th International Conference on Information Systems Development. Toulon, France: AIS, 2019, p. 1-12. ISBN 978-2-9571876-0-7.

SAUNDERS, Gary, Michael BAUDIS, Regina BECKER, Sergi BELTRAN, Christophe BÉROUD, Ewan BIRNEY, Cath BROOKSBANK, Søren BRUNAK, Marc Van den BULCKE, Rachel DRYSDALE, Salvador CAPELLA-GUTIERREZ, Paul FLICEK, Francesco FLORINDI, Peter GOODHAND, Ivo GUT, Jaap HERINGA, Petr HOLUB, Jef HOOYBERGHS, Nick JUTY, Thomas M KEANE, Jan O KORBEL, Ilkka LAPPALAINEN, Brane LESKOSEK, Gert MATTHIJS, Michaela Th MAYRHOFER, Andres METSPALU, Arcadi NAVARRO, Steven NEWHOUSE, Tommi NYRÖNEN, Angela PAGE, Bengt PERSSON, Aarno PALOTIE, Helen PARKINSON, Jordi RAMBLA, David SALGADO, Erik STEINFELDER, Morris A SWERTZ, Alfonso VALENCIA, Susheel VARMA, Niklas BLOMBERG and Serena SCOLLEN. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews Genetics. 2019, vol. 20, No 11, p. 692-701, 9 pp. ISSN 1471-0056. Available from: https://dx.doi.org/10.1038/s41576-019-0156-9.

HRUBÁ, Marika. Library advocacy– efektivní prosazování zájmů knihoven : představení e-learningového kurzu „Úvod do library advocacy pro veřejné knihovny". Praha: Sdružení knihoven ČR, 2019.

RŮŽIČKA, Michal, Andrea MIRANDA, Lukáš HEJTMÁNEK, Zdeněk VAŠEK, Vlastimil KREJČÍŘ and Miroslav BARTOŠEK. Metodika bitové ochrany digitálních dat (The methodology for bit-level preservation of digital dat). 2019.

VADICAMO, Lucia, Vladimír MÍČ, Falchi FABRIZIO and Pavel ZEZULA. Metric Embedding into the Hamming Space with the n-Simplex Projection. In Giuseppe Amato, Claudio Gennaro, Vincent Oria, Milos Radovanovic. Similarity Search and Applications: 12th International Conference, SISAP 2019, Newark, New Jersey, USA, October 2-4, 2019, Proceedings. Cham: Springer International Publishing, 2019, p. 265-272. ISBN 978-3-030-32046-1. Available from: https://dx.doi.org/10.1007/978-3-030-32047-8_23.

CHREN, Stanislav, Barbora BÜHNOVÁ, Martin MACÁK, Lukáš DAUBNER and Bruno ROSSI. Mistakes in UML Diagrams: Analysis of Student Projects in a Software Engineering Course. Online. In Sarah Beecham, Daniela Damian. Proceedings of the 41st International Conference on Software Engineering: Software Engineering Education and Training. Piscataway, NJ, USA: IEEE Press, 2019, p. 100-109. ISBN 978-1-7281-1000-4. Available from: https://dx.doi.org/10.1109/ICSE-SEET.2019.00019.

WALLETZKÝ, Leonard, Luca CARUBBO and Mouzhi GE. Modelling Service Design and Complexity for Multi-contextual Applications in Smart Cities. Online. In 2019 23rd International Conference on System Theory, Control and Computing (ICSTCC). Sinaia, Romania: IEEE, 2019, p. 101-106. ISBN 978-1-7281-0699-1. Available from: https://dx.doi.org/10.1109/ICSTCC.2019.8885800.

BLAŽEK, Pavel, Petr KOVÁCS, David MIKSTEIN, Jitka SPURNÁ and Jan TAJOVSKÝ. MUNI 100 — Příběh GISu (MUNI 100 — The story of GIS). Online. In Sborník příspěvků 28. konference GIS ESRI. 2019th ed. Praha: ARCDATA PRAHA, s.r.o., 2019, p. 39-42. ISBN 978-80-905316-7-3.

ČELEDA, Pavel, Jakub ČEGAN, Martin DRAŠAR, Ivo NUTÁR, Jiří RÁJA, Tomáš REBOK, Andrej TOMČI and Daniel TOVARŇÁK. Nástroje pro ověřování bezpečnosti SW/HW a simulaci útoků na prvky kritické informační infrastruktury (Tools for verification of SW/HW security and simulation of attacks on critical information infrastructure). 2019.

GEŠVINDR, David, Ondřej GASIOR and Barbora BÜHNOVÁ. PaaSArch Cloud Prototyper Tool. 2019.

GEŠVINDR, David and Barbora BÜHNOVÁ. PaaSArch: Quality Evaluation Tool for PaaS Cloud Applications Using Generated Prototypes. Online. In 2019 IEEE International Conference on Software Architecture Companion (ICSA-C). Neuveden: IEEE, 2019, p. 170-173. ISBN 978-1-7281-1876-5. Available from: https://dx.doi.org/10.1109/ICSA-C.2019.00038.

MATE, Sebastian, Marvin KAMPF, Wolfgang RÖDLE, Stefan KRAUS, Rumyana PROYNOVA, Kaisa SILANDER, Lars EBERT, Martin LABLANS, Christina SCHÜTTLER, Christian KNELL, Niina EKLUND, Michael HUMMEL, Petr HOLUB and Hans-Ulrich PROKOSCH. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl Clin Inform. 2019, vol. 10, No 04, p. 679-692. Available from: https://dx.doi.org/10.1055/s-0039-1695793.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Partial atomic charges for proteins. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

PETERS, K, J BRADBURY, S BERGMANN, M CAPUCCINI, M CASCANTE, Atauri P DE, TMD EBBELS, C FOGUET, R GLEN, A GONZALEZ-BELTRAN, UL GUNTHER, E HANDAKAS, T HANKEMEIER, K HAUG, S HERMAN, Petr HOLUB, M IZZO, D JACOB, D JOHNSON, F JOURDAN, N KALE, I KARAMAN, B KHALILI, PE KHONSARI, K KULTIMA, S LAMPA, A LARSSON, C LUDWIG, P MORENO, S NEUMANN, JA NOVELLA, O Donovan C, JTM PEARCE, A PELUSO, ME PIRAS, L PIREDDU, MAC REED, P ROCCA-SERRA, P ROGER, A ROSATO, R RUEEDI, C RUTTKIES, N SADAWI, RM SALEK, SA SANSONE, V SELIVANOV, O SPJUTH, D SCHOBER, EA THEVENOT, M TOMASONI, M VAN RIJSWIJK, M VAN VLIET, MR VIANT, RJM WEBER, G ZANETTI and C STEINBECK. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GIGASCIENCE. OXFORD: OXFORD UNIV PRESS, 2019, vol. 8, No 2, 12 pp. ISSN 2047-217X. Available from: https://dx.doi.org/10.1093/gigascience/giy149.

HRUBÁ, Marika. Pozvání do kurzu Úvod do library advocacy pro veřejné knihovny. Duha. Brno: Moravská zemská knihovna, 2019, vol. 33, No 4, p. 30-31. ISSN 0862-1985.

LHOTÁK, Martin, Zdeněk VAŠEK and Michal RŮŽIČKA. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav (ARCLib – development of open source system for long-term preservation for library digital collections). In LTP 2019: Nové trendy a východiská pri budovaní LTP archívov: zborník príspevkov zo 4. medzinárodnej konferencie o dlhodobej archivácii. Bratislava: Univerzitná knižnica v Bratislave, 2019, p. 53-63. ISBN 978-80-89303-77-9.

BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. Quality Management for Big 3D Data Analytics: A Case Study of Protein Data Bank. Online. In Proceedings of the 4th International Conference on Internet of Things, Big Data and Security - Volume 1. Crete, Greece: SciTePress, 2019, p. 286-293. ISBN 978-989-758-369-8. Available from: https://dx.doi.org/10.5220/0007717402860293.

LAMBA, Vikas, Nikola ŠIMKOVÁ and Bruno ROSSI. Recommendations for Smart Grid Security Risk Management. Cyber-Physical Systems. Taylor & Francis, 2019, vol. 5, No 2, p. 92-118. ISSN 2333-5785. Available from: https://dx.doi.org/10.1080/23335777.2019.1600035.

TRANG, Le Hong, Hind BANGUI, Mouzhi GE and Barbora BÜHNOVÁ. Scaling Big Data Applications in Smart City with Coresets. Online. In Proceedings of the 8th International Conference on Data Science, Technology and Applications - Volume 1. Prague, Czech Republic: SciTePress, 2019, p. 357-363. ISBN 978-989-758-377-3. Available from: https://dx.doi.org/10.5220/0007958803570363.

HRABOVSKÁ, Katarína, Nikola ŠIMKOVÁ, Bruno ROSSI and Tomáš PITNER. Smart Grids and Software Testing Process Models. Online. In Ruzicka, J. 2019 Smart City Symposium Prague (SCSP). New York: IEEE, 2019, p. 1-6. ISBN 978-1-72810-497-3. Available from: https://dx.doi.org/10.1109/SCSP.2019.8805718.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Michal BERAN, František HRDINA, Tomáš JIRSÍK, Daniel KOUŘIL, Michal MAZOUREK, Radek OŠLEJŠEK, Michal PROCHÁZKA, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Vadim JANOVSKIJ and Kristína ZÁKOPČANOVÁ. Software pro detekci a analýzu napadení KII (Software for detection and analysis of attacks on critical information infrastructures). 2019.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Milan ČERMÁK, Jan DUDA, Vlastimil HOLER, Ľuboš HYŽÁK, Boris JADUŠ, Jakub KADAŠI, David LEŠKA, Martin MACHÁČ, Ivo NUTÁR, Radek OŠLEJŠEK, Dominik PILÁR, Tomáš PLESNÍK, Michal PROCHÁZKA, Tomáš REBOK, Vít RUSŇÁK, Miloslav STANĚK, Pavel ŠEDA, Valdemar ŠVÁBENSKÝ, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Jan VYKOPAL and Tatiana ZBONČÁKOVÁ. Software pro simulaci obecných i kritických informačních infrastruktur (Software for simulation of generic and critical information infrastructures). 2019.

CHREN, Stanislav, Radoslav MIČKO, Barbora BÜHNOVÁ and Bruno ROSSI. STRAIT: A Tool for Automated Software Reliability Growth Analysis. Online. In Margaret-Anne Storey. Proceedings of the 16th International Conference on Mining Software Repositories. Piscataway, NJ, USA: ACM, 2019, p. 105-110. ISBN 978-1-7281-3412-3. Available from: https://dx.doi.org/10.1109/MSR.2019.00025.

ISON, Jon, Hans IENASESCU, Piotr CHMURA, Emil RYDZA, Hervé MÉNAGER, Matúš KALAŠ, Veit SCHWÄMMLE, Björn GRÜNING, Niall BEARD, Rodrigo LOPEZ, Severine DUVAUD, Heinz STOCKINGER, Bengt PERSSON, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Jiří VONDRÁŠEK, Hedi PETERSON, Ahto SALUMETS, Inge JONASSEN, Rob HOOFT, Tommi NYRÖNEN, Alfonso VALENCIA, Salvador CAPELLA, Josep GELPÍ, Federico ZAMBELLI, Babis SAVAKIS, Brane LESKOŠEK, Kristoffer RAPACKI, Christophe BLANCHET, Rafael JIMENEZ, Arlindo OLIVEIRA, Gert VRIEND, Olivier COLLIN, Jacques van HELDEN, Peter LØNGREEN and Søren BRUNAK. The bio.tools registry of software tools and data resources for the life sciences. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2019, vol. 20, No 164, p. 1-4. ISSN 1474-760X. Available from: https://dx.doi.org/10.1186/s13059-019-1772-6.

ŠTEFANKO, Martin, Ondřej CHALOUPKA and Bruno ROSSI. The Saga Pattern in a Reactive Microservices Environment. Online. In Marten van Sinderen and Leszek Maciaszek. 14th International Conference on Software Technologies (ICSOFT 2019). Prague: SciTePress, 2019, p. 483-490. ISBN 978-989-758-379-7. Available from: https://dx.doi.org/10.5220/0007918704830490.

MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN and David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, p. 819-823. ISBN 978-1-5386-6249-6. Available from: https://dx.doi.org/10.1109/ICIP.2019.8803721.

CIOROAICA, Emilia, Stanislav CHREN, Thomas KUHN, Barbora BÜHNOVÁ and Dimitar DIMITROV. Towards Creation of a Reference Architecture for Trust-Based Digital Ecosystems. In Proceedings of European Conference on Software Architecture (ECSA 2019) Workshops. Paris, France: ACM, 2019, p. 273-276. ISBN 978-1-4503-7142-1. Available from: https://dx.doi.org/10.1145/3344948.3344973.

MORRIS, Chris, Paolo ANDREETTO, Lucia BANCI, Alexandre M J J BONVIN, Grzegorz CHOJNOWSKI, Laura del CANO, José Marıa CARAZO, Pablo CONESA, Susan DAENKE, George DAMASKOS, Andrea GIACHETTI, Natalie E C HALEY, Maarten L HEKKELMAN, Philipp HEUSER, Robbie P JOOSTEN, Daniel KOUŘIL, Aleš KŘENEK, Tomáš KULHÁNEK, Victor S LAMZIN, Nurul NADZIRIN, Anastassis PERRAKIS, Antonio ROSATO, Fiona SANDERSON, Joan SEGURA, Joerg SCHAARSCHMIDT, Egor SOBOLEV, Sergio TRALDI, Mikael E TRELLET, Sameer VELANKAR, Marco VERLATO and Martyn WINN. West-Life: A Virtual Research Environment for structural biology. Journal of Structural Biology: X. 2019, vol. 1, January - March 2019, p. 1-8. ISSN 2590-1524. Available from: https://dx.doi.org/10.1016/j.yjsbx.2019.100006.

BÜHNOVÁ, Barbora and Dita PŘIKRYLOVÁ. Women Want to Learn Tech: Lessons from the Czechitas Education Project. Online. In Proceedings of the 2nd International Workshop on Gender Equality in Software Engineering. USA: IEEE Press, 2019, p. 25-28. ISBN 978-1-72812-245-8. Available from: https://dx.doi.org/10.1109/GE.2019.00013.

GE, Mouzhi and Fabio PERSIA. A Generalized Evaluation Framework for Multimedia Recommender Systems. International Journal of Semantic Computing. World Scientific, 2018, vol. 12, No 4, p. 541-557. ISSN 1793-351X. Available from: https://dx.doi.org/10.1142/S1793351X18500046.

LIPČÁK, Jakub and Bruno ROSSI. A Large-Scale Study on Source Code Reviewer Recommendation. Online. In 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018. Not specified: IEEE, 2018, p. 378-387. ISBN 978-1-5386-7383-6. Available from: https://dx.doi.org/10.1109/SEAA.2018.00068.

PAZÚRIKOVÁ, Jana, Jaroslav OĽHA, Aleš KŘENEK and Vojtěch SPIWOK. Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. arXiv, 2018, 22 pp. arXiv:1801.02362.

KIŠŠ, Filip and Bruno ROSSI. Agile to Lean Software Development Transformation: A Systematic Literature Review. Online. In 2018 Federated Conference on Computer Science and Information Systems (FedCSIS). Not specified: IEEE, 2018, p. 969-973. ISBN 978-83-949419-5-6. Available from: https://dx.doi.org/10.15439/2018F53.

GE, Mouzhi, Hind BANGUI and Barbora BÜHNOVÁ. Big Data for Internet of Things: A Survey. Future Generation Computer Systems. Elsevier, 2018, vol. 87, No 1, p. 601-614. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2018.04.053.

TRACHTOVÁ, Karolína, Jan OPPELT, Kateřina AMRUZ ČERNÁ and Marek MRÁZ. Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells. In RNA and Disease, Uppsala, Sweden. 2018.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Dan POLANSKÝ, Karel BERKA and Jaroslav KOČA. bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio.tools. In F1000Research. 2018. Available from: https://dx.doi.org/10.7490/f1000research.1115564.1.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. CCL - Charge Calculation Language. In ELIXIR CZ Annual Conference 2018. 2018. ISBN 978-80-86241-60-9.

LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA and Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, vol. 7, No 2018, p. 1-16. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.15161.1.

KNÍŽEK, Jiří, Lubomír PAVLIŠKA, Václav PROCHÁZKA, Adéla VRTKOVÁ, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL and Martin KUBA. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version. International Journal of Mathematics and Computation™. CESER, 2018, vol. 29, No 2, p. 29-58. ISSN 0974-5718.

SUCHÁNKOVÁ, Pavla and Radka SVOBODOVÁ VAŘEKOVÁ. Connection of glycoinformatics databases with Pubchem. In ENBIK. 2018. ISBN 978-80-7592-017-1.

STŘELÁK, David and Jiří FILIPOVIČ. cuFFTAdvisor. 2018.

MINISTR, Jan, Tomáš PITNER and Nikola ŠIMKOVÁ. Cybersecurity Qualifications. Online. In Ministr Jan, Tvrdíková Milena. Proceedings of the 21st International Conference on Information Technology for Practice. Ostrava: VŠB-Technical University of Ostrava, 2018, p. 141-146. ISBN 978-80-248-4196-0.

YANG, Qishan, Mouzhi GE and Markus HELFERT. Data Quality Problems in TPC-DI Based Data Integration Processes. Online. In Enterprise Information Systems. Germany: Springer Lecture Notes in Business Information Processing, 2018, p. 57-73. 321. ISBN 978-3-319-93374-0. Available from: https://dx.doi.org/10.1007/978-3-319-93375-7_4.

TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, vol. 24, No 3, p. 395-423. ISSN 1381-1231. Available from: https://dx.doi.org/10.1007/s10732-017-9339-8.

FOUSEK, Jan. Efficient sparse matrix-delayed vector multiplication for discretized neural field model. The Journal of Supercomputing. Springer US, 2018, vol. 74, No 5, p. 1863-1884. ISSN 0920-8542. Available from: https://dx.doi.org/10.1007/s11227-017-2194-4.

RAČEK, Tomáš, Ondřej SCHINDLER, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Empirical methods for calculation of partial atomic charges – applicability for proteins? In ENBIK2018. 2018. ISBN 978-80-7592-017-1.

HOLUB, Petr, Florian KOHLMAYER, Fabian PRASSER, Michaela Theresia MAYRHOFER, Irene SCHLUNDER, Gillian M. MARTIN, Sara CASATI, Lefteris KOUMAKIS, Andrea WUTTE, Lukas KOZERA, Dominik STRAPAGIEL, Gabriele ANTON, Gianluigi ZANETTI, Osman Ugur SEZERMAN, Maimuna MENDY, Dalibor VALÍK, Marialuisa LAVITRANO, Georges DAGHER, Kurt ZATLOUKAL, GertJan B. VAN OMMEN and Jan-Eric LITTON. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2018, vol. 16, No 2, p. 97-105. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2017.0110.

GE, Mouzhi and Fabio PERSIA. Evaluation in Multimedia Recommender Systems: A Practical Guide. In Proceedings of the 12th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2018, p. 294-297. ISBN 978-1-5386-4407-2. Available from: https://dx.doi.org/10.1109/ICSC.2018.00050.

BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. Exploring Big Data Clustering Algorithms for Internet of Things Applications. Online. In Proceedings of the 3rd International Conference on Internet of Things, Big Data and Security. Madeira, Portugal: SCITEPRESS, 2018, p. 269-276. ISBN 978-989-758-296-7. Available from: https://dx.doi.org/10.5220/0006773402690276.

PERSIA, Fabio, Mouzhi GE and Daniela D'AURIA. How to exploit Recommender Systems in Social Media. Online. In Proceedings of the IEEE 19th International Conference on Information Reuse and Integration for Data Science. Salt Lake City: IEEE, 2018, p. 537-541. ISBN 978-1-5386-2659-7. Available from: https://dx.doi.org/10.1109/IRI.2018.00085.

KREJČÍŘ, Vlastimil. Indexování a vyhledávání matematických formulí (Math formulae index and search). Online. Praha: Albertina icome Praha, 2018, 6 pp. ISSN 1801-2213.

SALOMONI, Davide, Luciano GAIDO, Isabel Campos PLASENCIA, Jesus E Marco de LUCAS, Peter SOLAGNA, Jorge GOMES, Luděk MATYSKA, P FUHRMAN, Marcus HARDT, Giacinto DONVITO, L DUTKA, Marcin Pl o CIENNIK, Roberto BARBERA, Cristina AIFTIMIEI, Ignacio BLANQUER, Andrea CECCANTI, Mario DAVID, Alvaro Lopez GARCIA, German MOLTO, P ORVIZ, Zdeněk SUSTR, M VILJOEN, Fernando AGUILAR, L ALVES, Alexandre BONVING, Riccardo BRUNO, D DAVIDOVIC, Marco FARGETTA, Yen CHEN, Sandro FIORE, Z KURKCUOGLU, L LLORET, J MARTINS, Alessandra NUZZO, Paola NASSISI, J PINA, Eva SCIACCA, Daniele SPIGA, M TANGARO, Michal URBANIAK, Bas WEGH and T ZOK. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures. Journal of Grid Computing. Springer Science+Business Media B.V., 2018, vol. 16, No 3, p. 381-408. ISSN 1570-7873. Available from: https://dx.doi.org/10.1007/s10723-018-9453-3.

PITNER, Tomáš, Jan MINISTR, Jan TOMÁŠEK, Martin LHOTÁK and Vyacheslav CHAPLYHA. Innovation of the Information System in the Field of Data Archiving. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 26th Interdisciplinary Information Management Talks (IDIMT) 2018 Strategic Modeling in Management, Economy and Society. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2018, p. 127-135. ISBN 978-3-99062-339-8.

CAPUTO, Francesco, Barbora BÜHNOVÁ and Leonard WALLETZKÝ. Investigating the role of smartness for sustainability: Insights from the Smart Grid domain. Sustainability Science. Tokyo: Springer, 2018, vol. 13, No 5, p. 1299-1309. ISSN 1862-4065. Available from: https://dx.doi.org/10.1007/s11625-018-0555-4.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK and Jana PAZÚRIKOVÁ. Kernel Tuning Toolkit. 2018.

PIVOLUSKA, Matej, Marcus HUBER and Mehul MALIK. Layered quantum key distribution. Physical Review A. 2018, vol. 97, No 3, p. "032312:1"-"032312:10", 10 pp. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.97.032312.

PLESCH, Martin and Matej PIVOLUSKA. Loss of information in quantum guessing game. New Journal of Physics. IOP publishing, 2018, vol. 20, 07 02 2018, p. "023018:1"-"023018:10", 10 pp. ISSN 1367-2630. Available from: https://dx.doi.org/10.1088/1367-2630/aaa5f8.

BAVARESCO, Jessica, Natalia Herrera VALENCIA, Claude KLÖCKL, Matej PIVOLUSKA, Paul ERKER, Nicolai FRIIS, Mehul MALIK and Marcus HUBER. Measurements in two bases are sufficient for certifying high-dimensional entanglement. Nature Physics. Nature Publishing Group, 2018, vol. 14, No 10, p. 1032-1040. ISSN 1745-2473. Available from: https://dx.doi.org/10.1038/s41567-018-0203-z.

PELÁNEK, Radek, Tomáš EFFENBERGER, Matěj VANĚK, Vojtěch SASSMANN and Dominik GMITERKO. Measuring Item Similarity in Introductory Programming. Online. In Rose Luckin, Scott Klemmer, Kenneth R. Koedinger. Proceedings of the Fifth Annual ACM Conference on Learning at Scale. New York, NY, USA: ACM, 2018, p. "19:1"-"19:4", 4 pp. ISBN 978-1-4503-5886-6. Available from: https://dx.doi.org/10.1145/3231644.3231676.

POLČÁK, Radim, Leoš ŠEVČÍK, Michal KOŠČÍK, Jakub KLODWIG and Petr HOLUB. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR (Methodology of GDPR Application to Research Data in Czech Republic Universities). 1. vydání. Brno: Neuveden, 2018, 156 pp. Available from: https://dx.doi.org/10.5281/zenodo.2532860.

SOJKA, Petr, Michal RŮŽIČKA and Vít NOVOTNÝ. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, p. 1923-1926. ISBN 978-1-4503-6014-2. Available from: https://dx.doi.org/10.1145/3269206.3269233.

OPPELT, Jan, Karolína TRACHTOVÁ and Marek MRÁZ. microRNA – are you real? In ENBIK2018 conference proceedings, Skalský dvůr. 2018.

OPPELT, Jan, Karolína TRACHTOVÁ and Marek MRÁZ. microRNA – are you real?! In ENBIK2018 - National Bioinformatics Conference. 2018. ISBN 978-80-7592-017-1.

BANGUI, Hind, Said RAKRAK, Said RAGHAY and Barbora BÜHNOVÁ. Moving to the Edge-Cloud-of-Things: Recent Advances and Future Research Directions. Electronics. Switzerland: MDPI, 2018, vol. 7, No 11, p. 1-31. ISSN 2079-9292. Available from: https://dx.doi.org/10.3390/electronics7110309.

BANGUI, Hind, Said RAKRAK, Said RAGHAY and Barbora BÜHNOVÁ. Moving towards Smart Cities: A Selection of Middleware for Fog-to-Cloud Services. Applied Sciences. Switzerland: MDPI, 2018, vol. 8, No 11, p. 1-20. ISSN 2076-3417. Available from: https://dx.doi.org/10.3390/app8112220.

WALLETZKÝ, Leonard and Mouzhi GE. MULTIDISCIPLINARY EDUCATION INFLUENCED BY COMPLEX SERVICES. Online. In 11th Annual International Conference of Education, Research and Innovation (ICERI 2018). Sevilla, Spain: IATED, 2018, p. 7802-7806. ISBN 978-84-09-05948-5.

STŘELÁK, David and Jiří FILIPOVIČ. Performance analysis and autotuning setup of the cuFFT library. Online. In ACM International Conference Proceeding Series. Limassol, Cyprus: ACM, 2018, p. nestránkováno, 6 pp. ISBN 978-1-4503-6591-8. Available from: https://dx.doi.org/10.1145/3295816.3295817.

HELFERT, Markus and Mouzhi GE. Perspectives of Big Data Quality in Smart Service Ecosystem. Journal of Information Technology Management. 2018, vol. 10, No 4, p. 72-83. ISSN 2008-5893. Available from: https://dx.doi.org/10.22059/JITM.2019.72763.

GE, Mouzhi and Vlastislav DOHNAL. Quality Management in Big Data. Informatics. Switzerland, 2018, vol. 5, No 2. ISSN 2227-9709. Available from: https://dx.doi.org/10.3390/informatics5020019.

KLUSÁČEK, Dalibor, Boris PARÁK, Václav CHLUMSKÝ and Lukáš HEJTMÁNEK. Real-life Experience with Private Cloud hosting Heterogeneous Scientific Workloads. Online. In 2018 IEEE/ACM INTERNATIONAL CONFERENCE ON UTILITY AND CLOUD COMPUTING COMPANION (UCC COMPANION). NEW YORK: IEEE, 2018, p. 115-120. ISBN 978-1-72810-359-4. Available from: https://dx.doi.org/10.1109/UCC-Companion.2018.00044.

CAPUTO, Francesco, Barbora BÜHNOVÁ and Leonard WALLETZKÝ. Reflecting upon the role of smart grids in linking smartness and sustainability. Online. In Sergio Barile, Raul Espejo, Igor Perko, Marialuisa Saviano. Cybernetics and Systems: Social and Business Decisions. Neuveden: Routledge, 2018, p. 205-210. ISBN 978-0-367-66324-7. Available from: https://dx.doi.org/10.4324/9780429486982-43.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ and Tomáš PITNER. Reliability Data for Smart Grids: Where the Real Data can be Found. Online. In Ruzicka, J. 2018 Smart City Symposium Prague (SCSP). New York: IEEE, 2018, p. 1-6. ISBN 978-1-5386-5017-2. Available from: https://dx.doi.org/10.1109/SCSP.2018.8402648.

KALENDA, Martin, Petr HYNA and Bruno ROSSI. Scaling Agile in Large Organizations: Practices, Challenges, and Success Factors. Journal of Software: Evolution and Process. 2018, vol. 30, No 10, p. 1-24. ISSN 2047-7473. Available from: https://dx.doi.org/10.1002/smr.1954.

KUČERA, Adam and Tomáš PITNER. Semantic BMS: Allowing usage of building automation data in facility benchmarking. Advanced Engineering Informatics. 2018, vol. 35, January, p. 69-84. ISSN 1474-0346. Available from: https://dx.doi.org/10.1016/j.aei.2018.01.002.

SCHVARCBACHER, Martin, Katarína HRABOVSKÁ, Bruno ROSSI and Tomáš PITNER. Smart Grid Testing Management Platform (SGTMP). Applied Sciences-Basel. BASEL, SWITZERLAND: MDPI AG, 2018, vol. 8, No 11, p. 1-23. ISSN 2076-3417. Available from: https://dx.doi.org/10.3390/app8112278.

PITNER, Tomáš, Mirjana IVANOVIČ, Miloš SAVIĆ and Stelios XINOGALOS. Students’ perspective on the first programming language: C-like or Pascal-like languages? Journal Education and Information Technologies. New York, USA: Springer US, 2018, vol. 23, No 1, p. 287-302. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-017-9601-6.

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ, Radka SVOBODOVÁ VAŘEKOVÁ, Philip TOUKACH and Frederique LISACEK. SugarSketcher: Quick and Intuitive Online Glycan Drawing. Molecules. Mayer und Muller, 2018, vol. 23, No 12, p. 3206-3216. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules23123206.

PAPOUŠEK, Dalibor, Vojtěch KAŠE, Zdeněk POSPÍŠIL, Adam MERTEL, Jan FOUSEK and Eva VÝTVAROVÁ. Šíření křesťanství v antickém Středomoří (The Spread of Christianity in the Ancient Mediterranean). In Kognice a umělý život, Brno (30.5. - 1.6. 2018). 2018.

CHALUPA, Aleš, Tomáš GLOMB, Adam MERTEL, Eva VÝTVAROVÁ, Zdeněk STACHOŇ, Zdeněk POSPÍŠIL and Jan FOUSEK. Šíření „orientálních kultů“ po cestách starověkého Středomoří : Případové studie egyptských kultů a Mithraismu (The Spread of "Oriental Cults" in the Ancient Mediterranean : The Case of Egyptian Cults and Mithraism). In Kognice a umělý život 2018, Brno, 30.5.-1.6.2018. 2018.

POPESCU, Mirona, Mouzhi GE and Markus HELFERT. The Social Media Perception and Reality -Possible Data Quality Deficiencies between Social Media and ERP. In Proceedings of the 20th International Conference on Enterprise Information Systems. Madeira, Portugal: SCITEPRESS, 2018, p. 198-204. ISBN 978-989-758-298-1. Available from: https://dx.doi.org/10.5220/0006788801980204.

ANTOL, Matej and Vlastislav DOHNAL. Towards Artificial Priority Queues for Similarity Query Execution. Online. In 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW). Paris, France: IEEE, 2018, p. 78-83. ISBN 978-1-5386-6306-6. Available from: https://dx.doi.org/10.1109/ICDEW.2018.00020.

KADLEC, Miroslav, Jan ROSECKÝ, Filip PROCHÁZKA, Barbora BÜHNOVÁ and Tomáš PITNER. Towards Discovering the Limits of Smart Grid Communication Infrastructure. In Gandolfo Dominici. Governing Business Systems. Cham, Switzerland: Springer, 2018, p. 87-99. ISBN 978-3-319-66034-9. Available from: https://dx.doi.org/10.1007/978-3-319-66036-3_5.

ŠTĚPÁNEK, Petr and Mouzhi GE. Validation and Extension of the Smart City Ontology. Online. In Proceedings of the 20th International Conference on Enterprise Information Systems - Volume 2: ICEIS. Madeira, Portugal: SciTePress, 2018, p. 406-413. ISBN 978-989-758-298-1. Available from: https://dx.doi.org/10.5220/0006818304060413.

WALLETZKÝ, Leonard, Barbora BÜHNOVÁ and Luca CARRUBBO. Value-Driven Conceptualization of Services in the Smart City: A Layered Approach. In Social Dynamics in a Systems Perspective. Cham, Germany: Springer, 2018, p. 85-98. ISBN 978-3-319-61966-8. Available from: https://dx.doi.org/10.1007/978-3-319-61967-5_5.

PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB and Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, vol. 243, p. 75-79, 6 pp. ISSN 0926-9630. Available from: https://dx.doi.org/10.3233/978-1-61499-808-2-75.

GE, Mouzhi and Fabio PERSIA. A Survey of Multimedia Recommender Systems: Challenges and Opportunities. International Journal of Semantic Computing. World Scientific Publishing, 2017, vol. 11, No 3, p. 411-428. ISSN 1793-351X. Available from: https://dx.doi.org/10.1142/S1793351X17500039.

HELFERT, Markus and Mouzhi GE. A Tool for Demonstrating the Data Quality Bullwhip Effect. In Proceedings of the Innovative Teaching Approaches in Business Informatics. Wroclaw, Poland: IEEE, 2017.

GE, Mouzhi and Theodoros CHONDROGIANNIS. Assessing the Quality of Spatio-textual Datasets in the Absence of Ground Truth. In Proceedings of the 21st European Conference on Advances in Databases and Information Systems. Cham: Springer, 2017, p. 12-20. ISBN 978-3-319-67161-1. Available from: https://dx.doi.org/10.1007/978-3-319-67162-8_2.

FILIPOVIČ, Jiří, Filip PETROVIČ and Siegfried BENKNER. Autotuning of OpenCL Kernels with Global Optimizations. Online. In 1st Workshop on Autotuning and Adaptivity Approaches for Energy Efficient HPC Systems (ANDARE'2017). Portland (USA): ACM, 2017, p. nestránkováno, 6 pp. ISBN 978-1-4503-5363-2. Available from: https://dx.doi.org/10.1145/3152821.3152877.

PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE and Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 22, p. 3627-3634. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx478.

RAČEK, Tomáš, Dan POLANSKÝ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. bio.tools Sum. In ELIXIR CZ Annual Conference 2017. 2017. ISBN 978-80-86241-57-9.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock 1.0. 2017.

KNÍŽEK, Jiří, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Martin KUBA, Lubomír PAVLIŠKA and Václav PROCHÁZKA. Computation of Kovanic's Expectedness Distributions with the Help of Parallel Computing - Basic Version (with Special References of Health and Environment). INTERNATIONAL JOURNAL OF ECOLOGICAL ECONOMICS & STATISTICS. UTTARAKHAND: CENTRE ENVIRONMENT SOCIAL & ECONOMIC RESEARCH PUBL-CESER, 2017, vol. 38, No 1, p. 96-119. ISSN 0973-1385.

HOFER-PICOUT, Philipp, Horst PICHLER, Johann EDER, Sabrina B. NEURURER, Heimo MÜLLER, Robert REIHS, Petr HOLUB, Thomas INSAM and Georg GOEBEL. Conception and Implementation of an Austrian Biobank Directory Integration Framework. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2017, vol. 15, No 4, p. 332-340. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2016.0113.

CHALUPA, Aleš, Eva VÝTVAROVÁ, Jan FOUSEK and Adam MERTEL. Connection Between Mithraism and Roman Army Garrisons. In Historical Network Research Conference, 17.-18.10.2017, Turku, Finland. 2017.

SINGHA ROY, Nivir Kanti and Bruno ROSSI. Cost-Sensitive Strategies for Data Imbalance in Bug Severity Classification: Experimental Results. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, p. 426-429. ISBN 978-1-5386-2140-0. Available from: https://dx.doi.org/10.1109/SEAA.2017.71.

HELFERT, Markus and Mouzhi GE. Developing an Enterprise Architecture Framework and Services for Smart Cities. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, p. 383-390. ISBN 978-3-99062-119-6.

KRÁL, Jaroslav, Tomáš PITNER and Michal ŽEMLIČKA. Document-Oriented Middleware: The Way to High-Quality Software. In International Conference on Computational Science and Its Applications. 1st ed. Cham: Springer, Cham, 2017, p. 607-619. ISBN 978-3-319-62403-7. Available from: https://dx.doi.org/10.1007/978-3-319-62404-4_45.

HŘEBÍČEK, Jiří, Ralf DENZER, Gerald SCHIMAK and Tomáš PITNER. Environmental Software Systems. Computer Science for Environmental Protection12th IFIP WG 5.11 International Symposium. In IFIPAICT, volume 507. 1st ed. Cham: Springer, Cham, 2017, 486 pp. ISBN 978-3-319-89934-3. Available from: https://dx.doi.org/10.1007/978-3-319-89935-0.

VÝTVAROVÁ, Eva and Jan FOUSEK. Evaluation of community detection algorithms applied to time-series connectivity networks with dynamical structure. In CompleNet'17, Dubrovnik, Croatia. 2017.

RŮŽIČKA, Michal, Vít NOVOTNÝ, Petr SOJKA, Jan POMIKÁLEK and Radim ŘEHŮŘEK. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines. Online. In CEUR Workshop Proceedings, Vol. 1923. Vienna, Austria: Neuveden, 2017, p. 1-12. ISSN 1613-0073.

JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH and Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, vol. 6, JUN, p. 876-888. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.11407.1.

YANG, Qishan, Mouzhi GE and Markus HELFERT. Guildlines of Data Quality Issues for Data Integration in the Context of the TPC-DI Benchmark. In Proceedings of the 19th International Conference on Enterprise Information Systems. Porto, Portugal: SciTePress, 2017, p. 135-144. ISBN 978-989-758-247-9. Available from: https://dx.doi.org/10.5220/0006334301350144.

POPOVICI, Vlad, Aleš KŘENEK and Eva BUDINSKÁ. Identification of "BRAF-Positive" Cases Based on Whole-Slide Image Analysis. Biomed Research International. New York: HINDAWI LTD, 2017, Neuveden, April, p. nestránkováno, 7 pp. ISSN 2314-6133. Available from: https://dx.doi.org/10.1155/2017/3926498.

PITNER, Tomáš, Jan MINISTR and Andreja PUCIHAR. Innovation and diversity. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, p. 63-69. ISBN 978-3-99062-119-6.

PITNER, Tomáš and Jan MINISTR. Innovation Of The Information Management In Compliance Management Area. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, p. 71-78. ISBN 978-3-99062-119-6.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL, Irena REKTOROVÁ and Eva HLADKÁ. Investigating Community Detection Algorithms and their Capacity as Markers of Brain Diseases. Online. In International Symposium on Grids and Clouds (ISGC) 2017. Academia Sinica, Taipei, Taiwan: Proceedings of Science. Taipei; Taiwan: Sissa Medialab Srl, 2017, p. 1-14. ISSN 1824-8039. Available from: https://dx.doi.org/10.22323/1.293.0018.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL and Irena REKTOROVÁ. Investigating Modularity and Its Capacity As a Marker of Neurodegenerative Diseases. In 64. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, České Budějovice. 2017.

MASSIMO, David, Mehdi ELAHI, Francesco RICCI and Mouzhi GE. Item Contents Good, User Tags Better: Empirical Evaluation of a Food Recommender System. Online. In Proceedings of the 25th Conference on User Modeling, Adaptation and Personalization. Bratislava, Slovakia: ACM, 2017, p. 373-374. ISBN 978-1-4503-4635-1. Available from: https://dx.doi.org/10.1145/3079628.3079640.

ŠTĚPÁNEK, Petr, Mouzhi GE and Leonard WALLETZKÝ. IT-enabled Digital Service Design Principles - Lessons Learned from Digital Cities. Online. In Themistocleous, Marinos, Morabito, Vincenzo. Proceedings of the 14th European Mediterranean & Middle Eastern Conference on Information Systems. Coimbra, Portugal: Springer, 2017, p. 186-196. ISBN 978-3-319-65929-9. Available from: https://dx.doi.org/10.1007/978-3-319-65930-5_15.

VÝTVAROVÁ, Eva, Radek MAREČEK, Jan FOUSEK, Ondřej STRÝČEK and Ivan REKTOR. Large-scale cortico-subcortical functional networks in focal epilepsies: The role of the basal ganglia. NeuroImage-Clinical. Oxford: Elsevier BV, 2017, vol. 2017, No 14, p. 28-36. ISSN 2213-1582. Available from: https://dx.doi.org/10.1016/j.nicl.2016.12.014.

RŮŽIČKA, Michal. Math Information Retrieval for Digital Libraries. Brno: Masaryk University, Faculty of Informatics, 2017, 144 pp. Doctoral Thesis.

KREJČÍŘ, Vlastimil. Mathematics Index and Search in DSpace. In OAI10 DSpace user group meeting (Pre-conference of OAI 10 - The CERN - UNIGE Workshop on Innovations in Scholarly Communication). 2017.

CAPUTO, Francesco, Mouzhi GE and Leonard WALLETZKÝ. Modelling the Service Value Chain for Smart City. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, p. 375-382. ISBN 978-3-99062-119-6.

BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ, Said RAKRAK, Said RAGHAY and Tomáš PITNER. Multi-Criteria Decision Analysis Methods in the Mobile Cloud Offloading Paradigm. Journal of Sensor and Actuator Networks. MDPI, 2017, vol. 6, No 4, p. 1-19. ISSN 2224-2708. Available from: https://dx.doi.org/10.3390/jsan6040025.

BARTOŠEK, Miroslav, Michal RŮŽIČKA and Václav STUPKA. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to (GDPR Regulation and its Implementation at Universities in the Czech Republic - how to do it). In EUNIS-CZ. Dopad zavedení novely VŠ zákona do IS vysokých škol. 1st ed. Plzeň: Západočeská univerzita v Plzni, 2017, p. 5-14. ISBN 978-80-261-0713-2.

KADLEC, Miroslav, Barbora BÜHNOVÁ and Tomáš PITNER. Planning and Scheduling for Optimizing Communication in Smart Grids. Online. In 12th International Symposium on Environmental Software Systems, ISESS 2017;. Zadar: Springer New York LLC, 2017, p. 446-456. ISBN 978-3-319-89934-3. Available from: https://dx.doi.org/10.1007/978-3-319-89935-0_37.

ANTOL, Matej and Vlastislav DOHNAL. Popularity-Based Ranking for Fast Approximate kNN Search. Informatica. Lithuanian Academy of Sciences, 2017, vol. 28, No 1, p. 1-21. ISSN 0868-4952. Available from: https://dx.doi.org/10.15388/Informatica.2017.118.

DOSTÁL, Otto, Otto DOSTÁL and Michal JAVORNÍK. Právní limity nakládání s údaji o zdravotním stavu. In XIII. mezinárodní kongres informačních technologií ve zdravotnictví. 2017.

GE, Mouzhi, Markus HELFERT and Tony O'BRIEN. Predicting Data Quality Success - The Bullwhip Effect in Data Quality. In Björn Johansson. Proceedings of the 16th International Conference on Perspectives in Business Informatics Research. Copenhagen, Denmark: Springer, 2017, p. 157-165. ISBN 978-3-319-64929-0. Available from: https://dx.doi.org/10.1007/978-3-319-64930-6_12.

MINISTR, Jan and Tomáš PITNER. Process Support of Information Security according to COBIT® 5. In NEMEC, R., CHYTILOVA, L. Proceedings of the 12 th International Conference on Strategic Management and its Support by Information Systems 2017. Ostrava, Czech Republic: VŠB – Technical University of Ostrava, Faculty of Economics, 2017, p. 418-424. ISBN 978-80-248-4046-8.

KOBUSIŃSKA, Anna, Adam WOLSKI, Jerzy BRZEZIŃSKI and Mouzhi GE. P2P Web Browser Middleware to Enhance Service Oriented Computing - Analysis and Evaluation. In 10th IEEE International Conference on Service-Oriented Computing and Applications (SOCA 2017). New York: IEEE, 2017, p. 58-65. ISBN 978-1-5386-1326-9. Available from: https://dx.doi.org/10.1109/SOCA.2017.16.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK, Vojtěch SPIWOK and Mária ŠIMKOVÁ. Reducing the number of mean-square deviation calculations with floating close structure in metadynamics. Journal of Chemical Physics. Melville: American Institute of Physics, 2017, vol. 146, No 11, p. "115101:1"-"115101:8", 8 pp. ISSN 0021-9606. Available from: https://dx.doi.org/10.1063/1.4978296.

FOUSEK, Jan, Vojtěch KAŠE, Eva VÝTVAROVÁ and Adam MERTEL. Relating the Spread of Early Christianity to the Transportation Network of Ancient Mediterranean. In Historical Network Research Conference, Turku, Finland. 2017.

GE, Mouzhi and Fabio PERSIA. Research Challenges in Multimedia Recommender Systems. Online. In Proceedings of the IEEE International Conference on Semantic Computing. San Diego, USA: IEEE, 2017, p. 344-347. ISBN 978-1-5090-4896-0. Available from: https://dx.doi.org/10.1109/ICSC.2017.31.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK and Otto DOSTÁL. Reversible Watermarking in Medical Imaging with Zero Distortion in ROI. Online. In Proceedings of 24th IEEE International Conference on Electronics, Circuits and Systems (ICECS 2017). New York: IEEE, 2017, p. 356-359. ISBN 978-1-5386-1911-7. Available from: https://dx.doi.org/10.1109/ICECS.2017.8292071.

KUČERA, Adam and Tomáš PITNER. Semantic BMS: Ontology for Analysis of Building Operation Efficiency. In Hřebíček J., Denzer R., Schimak G., Pitner T. Environmental Software Systems. Computer Science for Environmental Protection. Cham: Springer, 2017, p. 349-359. ISBN 978-3-319-89934-3. Available from: https://dx.doi.org/10.1007/978-3-319-89935-0_29.

RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ and Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, p. 81-90. ISBN 978-1-945626-62-3. Available from: https://dx.doi.org/10.18653/v1/W17-2611.

KLUSÁČEK, Dalibor, Boris PARÁK and Lukáš HEJTMÁNEK. Scheduling Challenges in a Shared Private Cloud Infrastructure. CGW Workshop'17 Proceedings. 2017, vol. 2017, No 1, p. 23-24.

SCHVARCBACHER, Martin and Bruno ROSSI. Smart Grids Co-Simulations with Low-Cost Hardware. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, p. 252-255. ISBN 978-1-5386-2140-0. Available from: https://dx.doi.org/10.1109/SEAA.2017.43.

BANGUI, Hind, Barbora BÜHNOVÁ, Said RAKRAK and Said RAGHAY. Smart mobile technologies for the city of the future. Online. In Smart City Symposium Prague (SCSP), 2017. Neuveden: IEEE, 2017, p. 1-6. ISBN 978-1-5386-3825-5. Available from: https://dx.doi.org/10.1109/SCSP.2017.7973851.

IVANOVIČ, Mirjana, Stelios XINOGALOS, Tomáš PITNER and Miloš SAVIĆ. Technology enhanced learning in programming courses – international perspective. Education and Information Technologies. New York, NY, USA: Springer US, 2017, vol. 22, No 6, p. 2981-3003. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-016-9565-y.

VÝTVAROVÁ, Eva, Jan FOUSEK, Marek BARTOŇ, Radek MAREČEK, Martin GAJDOŠ, Martin LAMOŠ, Marie NOVÁKOVÁ, Tomáš SLAVÍČEK, Igor PETERLÍK and Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, p. 2644-2648. ISBN 978-0-9928626-7-1. Available from: https://dx.doi.org/10.23919/EUSIPCO.2017.8081690.

PITNER, Tomáš, Jan MINISTR, Daniel TOVARŇÁK, Filip KŠENZULIAK and Adam KUČERA. Towards a Common Logging and Monitoring Framework for Critical Infrastructures. In Radek Němec, Lucie Chytilová. Strategic Management and its Support by Information Systems (SMSIS). Ostrava: VŠB - Technical University of Ostrava, 2017, p. 488-495. ISBN 978-80-248-4046-8.

KADLEC, Miroslav, Barbora BÜHNOVÁ, Jan TOMŠÍK, Jan HERMAN and Kateřina DRUŽBÍKOVÁ. Weather forecast based scheduling for demand response optimization in smart grids. Online. In Smart City Symposium Prague (SCSP), 2017. Prague: IEEE, 2017, p. 1-6. ISBN 978-1-5386-3825-5. Available from: https://dx.doi.org/10.1109/SCSP.2017.7973867.

ROČEK, Aleš, Karel SLAVÍČEK, Otto DOSTÁL and Michal JAVORNÍK. A new approach to fully-reversible watermarking in medical imaging with breakthrough visibility parameters. Biomedical Signal Processing and Control. Elsevier, 2016, vol. 29, No 7, p. 44-52. ISSN 1746-8094. Available from: https://dx.doi.org/10.1016/j.bspc.2016.05.005.

FILIPOVIČ, Jiří, Jana PAZÚRIKOVÁ, Aleš KŘENEK and Vojtěch SPIWOK. Accelerated RMSD Calculation for Molecular Metadynamics. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgie: EUROSIS - ETI, 2016, p. 278-280. ISBN 978-90-77381-95-3.

HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER and Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, vol. 14, No 6, p. 559-562. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2016.0088.

MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE and Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, vol. 2016, p. 1-6. ISSN 1437-1588. Available from: https://dx.doi.org/10.1007/s00103-015-2301-8.

RUSŇÁK, Vít, Pavel TROUBIL, Eva HLADKÁ, Desana DAXNEROVÁ, Pavel KAJABA, Matej MINÁRIK, Svatoslav ONDRA and Tomáš SKLENÁK. CoUnSiL: A Videoconferencing Environment for Interpretation of Sign Language. Online. In Okyay Kaynak. 2016 15th International Conference on Information Technology Based Higher Education and Training (ITHET). Istanbul, Turkey: IEEE, 2016, p. 1-8. ISBN 978-1-5090-0778-3. Available from: https://dx.doi.org/10.1109/ITHET.2016.7760711.

RUSŇÁK, Vít, Pavel TROUBIL, Svatoslav ONDRA, Tomáš SKLENÁK, Desana DAXNEROVÁ, Eva HLADKÁ, Pavel KAJABA, Matej MINÁRIK, Peter NOVÁK, Christoph DAMM and Jaromír KALA. CoUnSiL: Collaborative Universe for Remote Interpreting of Sign Language in Higher Education. Online. In Klaus Miesenberger. Computers Helping People with Special Needs: 15th International Conference, ICCHP 2016, Linz, Austria, July 13-15, 2016, Proceedings, Part II. ICCHP 2016. Neuveden: Springer International Publishing, 2016, p. 392-399. ISBN 978-3-319-41267-2. Available from: https://dx.doi.org/10.1007/978-3-319-41267-2_55.

RUSŇÁK, Vít. CoUnSiL: Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education (Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education). In Sign Languages in Tertiary Education and Scholarly Publications in Sign Languages. 2016.

KŘENEK, Aleš, Tomáš RAČEK and Jana PAZÚRIKOVÁ. Direct SAXS Curve Fitting with an Ensable of Conformations. In Molecular Machines 2016. 2016.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK and Luděk MATYSKA. Guided Optimization Method for Fast and Accurate Atomic Charges Computation. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgicko: EUROSIS - ETI, 2016, p. 267-274. ISBN 978-90-77381-95-3.

KABÁT, Milan, Vojtěch DAVID, Petr HOLUB and Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, vol. 54, No 1, p. 326 - 335. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2015.04.007.

KOZEL, Jiří, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL and Jan SIKORA. Mapová knihovna munimap (Munimap mapping library). 2016.

RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, p. 331-337. ISBN 978-4-86049-071-3.

SOJKA, Petr and Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.

KREJČÍŘ, Vlastimil. Memento – cestování časem na webu (Memento: Time Travel for the Web). Online. In INFORUM 2016: 22. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2016, p. nestránkováno, 11 pp. ISSN 1801-2213.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Jana PAZÚRIKOVÁ, Stanislav GEIDL and Jaroslav KOČA. NEEMP – nástroj pro parametrizaci EEM. In ENBIK2016. 2016. ISBN 978-80-7080-960-0.

RAČEK, Tomáš, Jana PAZÚRIKOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL, Aleš KŘENEK, Francesco Luca FALGINELLA, Vladimír HORSKÝ, Václav HEJRET and Jaroslav KOČA. NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2016, vol. 8, October, p. nestránkováno, 14 pp. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-016-0171-1.

SEDLÁŘ, Milan, Bin JI, Tomáš KRÁTKÝ, Tomáš REBOK and Rostislav HUZLÍK. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil. Ocean Engineering. Elsevier Ltd., 2016, vol. 123, No 123, p. 357-382. ISSN 0029-8018. Available from: https://dx.doi.org/10.1016/j.oceaneng.2016.07.030.

ANTOL, Matej and Vlastislav DOHNAL. Optimizing Query Performance with Inverted Cache in Metric Spaces. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 20th East European Conference, ADBIS 2016. Cham: Springer, 2016, p. 60-73. ISBN 978-3-319-44038-5. Available from: https://dx.doi.org/10.1007/978-3-319-44039-2_5.

PAZÚRIKOVÁ, Jana, Tomáš RAČEK, Stanislav GEIDL, Radka SVOBODOVÁ VAŘEKOVÁ and Aleš KŘENEK. Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce (Parametrization of Electronegativity Equalization Method through Differential Evolution). In ENBIK 2016. 2016.

PLANTEFÈVE, Rosalie, Igor PETERLÍK, Nazim HAOUCHINE and Stéphane COTIN. Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. ANNALS OF BIOMEDICAL ENGINEERING. NEW YORK: SPRINGER, 2016, vol. 44, No 1, p. 139-153. ISSN 0090-6964. Available from: https://dx.doi.org/10.1007/s10439-015-1419-z.

HAMZÉ, Noura, Igor PETERLÍK, Stéphane COTIN and Caroline ESSERT. Preoperative trajectory planning for percutaneous procedures in deformable environments. Computerized Medical Imaging and Graphics. Elsevier, 2016, vol. 47, No 1, p. 16-28. ISSN 0895-6111. Available from: https://dx.doi.org/10.1016/j.compmedimag.2015.10.002.

MELICHAR, Marek, Jan HUTAŘ, Michal RŮŽIČKA, Zdeněk HRUŠKA, Zdeněk VAŠEK, Miroslav BARTOŠEK and Martin LHOTÁK. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách (ArcLib Project: Designing Solution for Long-term Preservation in Czech Libraries). IT lib. Bratislava: Centrum vedecko-technických informácií SR, 2016, vol. 20, No 2, p. 13-17. ISSN 1335-793X.

ROČEK, Aleš, Karel SLAVÍČEK and Michal JAVORNÍK. RONI Size and another Attributes of Representative Sample of Medical Images in Common Hospital Operation, Related to Securing by Watermarking Methods. In Prof. Osama Mohamed Mohamed Ahamed. International Conference on Image Processing, Production and Computer Science (ICIPCS'16). London: URENG, 2016, p. 44-51. ISBN 978-93-84422-62-2.

RYGL, Jan, Petr SOJKA, Michal RŮŽIČKA and Radim ŘEHŮŘEK. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Tenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2016. Brno: Tribun EU, 2016, p. 79-87. ISBN 978-80-263-1095-2.

RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, vol. 54, January 2016, p. 313-325. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2015.03.019.

MERINO-MARTINEZ, Roxana, Loreana NORLIN, David VAN ENCKEVORT, Gabriele ANTON, Simone SCHUFFENHAUER, Kaisa SILANDER, Linda MOOK, Petr HOLUB, Raffael BILD, Morris SWERTZ and Jan-Eric LITTON. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core). Biopreservation and Biobanking. 2016. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2015.0070.

BARTOŠEK, Miroslav. Uchování digitálního dědictví a systém Archivematica (Preservation of Digital Heritage and System Archivematica). ITlib. Infotmačné technológie a knižnice. Bratislava: Centrum vedecko-technických informácií SR, 2016, vol. 2016, No 2, p. 32-35. ISSN 1335-793X.

BARTOŠEK, Miroslav. Vývoj postoje k vědeckým informacím a modelu otevřeného přístupu (Evolution of the attitude to scholarly information and open access model). In Petra Dědičová, Pavla Rygelová, Jiří Marek, Jan Skůpa. Otevřený přístup k vědeckým informacím : současný stav v České republice a ve světě. První vydání. Brno: Nakladatelství VUTIUM, 2016, p. 14-22. ISBN 978-80-214-5282-4.

FILIPOVIČ, Jiří, Jan PLHÁK and David STŘELÁK. Acceleration of dRMSD Calculation and Efficient Usage of GPU Caches. In Waleed Smari. Proceedings of IEEE International Conference on High Performance Computing & Simulation. neuveden: IEEE, 2015, p. 47-54. ISBN 978-1-4673-7812-3. Available from: https://dx.doi.org/10.1109/HPCSim.2015.7237020.

KŘENEK, Aleš, Karel KUBÍČEK, Richard ŠTEFL and Jiří FILIPOVIČ. Accurate Fitting SAXS Curves with NMR Structure Ensembles. Online. In Simon Lin, Vicky Huang. Proceedings of International Symposium on Grids and Clouds 2015. Pissa: Proceedings of Science, 2015, p. nestránkováno, 9 pp. ISSN 1824-8039.

BARTOŠEK, Miroslav. Archivematica - open source systém pro digitální archivaci (Archivematica - Open Source System for Digital Archiving). Knihovna. Praha: Národní knihovna ČR, 2015, Ročník 26, No 2, p. 25-38. ISSN 1801-3252.

LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies. In Davood Rafiei, Katsumi Tanaka. NWSearch '15: Proceedings of the First International Workshop on Novel Web Search Interfaces and Systems. New York, NY, USA: ACM, 2015, p. 7-9. ISBN 978-1-4503-3789-2. Available from: https://dx.doi.org/10.1145/2810355.2810359.

TALBOT, Hugo, Nazim HAOUCHINE, Igor PETERLÍK, Jeremie DEQUIDT, Christian DURIEZ, Hervé DELINGETTE and Stephane COTIN. Dirk Bartz Prize for Visual Computing in Medicine. Eurographics Association, 2015.

TÓTH, Šimon and Miroslav RUDA. Distributed job scheduling in MetaCentrum. Journal of Physics: Conference Series. Institute of Physics, 2015, vol. 608, No 1, p. 012025-12029. ISSN 1742-6596. Available from: https://dx.doi.org/10.1088/1742-6596/608/1/012025.

BARTOŠEK, Miroslav. Dlouhodobé uchování digitálních informací, Archivematica a projekt LTP-pilot (Digital preservation, Archivematica, and the LTP-pilot project). Duha. Brno: Moravská zemská knihovna v Brně, 2015, roč. 29, č. 3, p. 36-37. ISSN 0862-1985.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS and Andrea KÝNOVÁ. GIS of Traditional Folk Culture. Geomatics Workbooks. Politecnico di Milano, 2015, vol. 12, July 2015, p. 113-120. ISSN 1591-092X.

GEIDL, Stanislav, Tomáš BOUCHAL, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ, Václav HEJRET, Aleš KŘENEK, Ruben ABAGYAN and Jaroslav KOČA. High-quality and universal empirical atomic charges for chemoinformatics applications. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2015, vol. 7, DEC, p. 1-10. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-015-0107-1.

HAOUCHINE, Nazim, Stephane COTIN, Igor PETERLÍK, Jeremie DEQUIDT, Mario Sanz LOPEZ, Erwan KERRIEN and Marie-Odile BERGER. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. IEEE Transactions on Visualization and Computer Graphics. 2015, vol. 21, No 5, p. 584 - 597. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2014.2377772.

TOMÁŠ, Martin, Tomáš REBOK and Christos EFSTATHIOU. Iterative Optimization of a Multi-compartmental Air Quality Modelling System. In Jan Kofroň and Tomáš Vojnar. Tenth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2015). první. Brno: MEMICS 2015, 2015, p. 70-81. ISBN 978-80-214-5254-1.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Radek OŠLEJŠEK, Zdenek EICHLER, Dalibor TOTH, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Václav RAČANSKÝ, Ivo NUTÁR and Dušan LAGO. KYPO - Kybernetický polygon (KYPO - Cybernetic Proving Ground). 2015.

DOSTÁL, Otto, Otto DOSTÁL and Michal JAVORNÍK. Legislativní aspekty dalšího rozvoje v oblasti telemedicíny. In XI. mezinárodní kongres informačních technologií ve zdravotnictví. 2015.

MALACH, Roman, Daniel DRÁPALA, Roman DOUŠEK, Alena KŘÍŽOVÁ, Martina PAVLICOVÁ, Miroslav VÁLKA, Jitka SPURNÁ, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL, Jiří KOZEL, Jana MALECKÁ, Marie NOVOTNÁ, Terézia GABRHELOVÁ, Anna HORÁKOVÁ, Daniela KOSTRHOUNOVÁ, Veronika KUTHANOVÁ, Barbora MACHOVÁ, Eva ŠIPÖCZOVÁ and Barbora VALEŠOVÁ. Mapa bibliografických informací tradiční lidové kultury (Map of bibliographic information of traditional folk culture). 2015.

TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems. Online. In Ingo Schwab, Leo van Moergestel, Gil Gonçalves. INTELLI 2015, The Fourth International Conference on Intelligent Systems and Applications. USA: IARIA, 2015, p. 61-65. ISBN 978-1-61208-437-4.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL and Petr HOLUB. MUSE framework 2.0. 2015.

SPIWOK, Vojtěch, Pavel OBORSKÝ, Jana PAZÚRIKOVÁ, Aleš KŘENEK and Blanka KRÁLOVÁ. Nonlinear vs. linear biasing in Trp-cage folding simulations. Journal of the chemical society. Faraday transactions II, Journal of chemical physics. London: Chemical society, 2015, vol. 142, No 11, p. nestránkováno, 8 pp. ISSN 0021-9606. Available from: https://dx.doi.org/10.1063/1.4914828.

SVOBODA, David, Vladimír ULMAN and Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, p. 712-716. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7163972.

FILIPOVIČ, Jiří and Siegfried BENKNER. OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. In Proceedings of IEEE International Symposium on Computer Architecture and High Performance Computing. Florianópolis: IEEE, 2015, p. 98-105. ISSN 1550-6533. Available from: https://dx.doi.org/10.1109/SBAC-PAD.2015.29.

FILIPOVIČ, Jiří, Matúš MADZIN, Jan FOUSEK and Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, vol. 71, No 10, p. 3934-3957. ISSN 0920-8542. Available from: https://dx.doi.org/10.1007/s11227-015-1483-z.

PETERLÍK, Igor. Physics-Based Needle Insertion into Heterogeneous Tissues for Pre-operative Planning. Brno: IHU - Institute of image-guided surgery, 2015, 8 pp. 20160201.

POLČÁK, Radim, Zdeněk ŘÍHA and Kamil MALINKA. Právní aspekty interních instrukcí – část II. (Legal aspects of internal directives - part II.). Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 3., p. 36-38. ISSN 1211-8737.

POLČÁK, Radim, Zdeněk ŘÍHA and Kamil MALINKA. Právní aspekty interních směrnic – část I. (Legal aspects of internal directives - part I.). Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 2., p. 36-39. ISSN 1211-8737.

PROCHÁZKA, Filip, Tomáš REBOK and Aleš FARDA. První návrh cílové infrastruktury pro provoz systému IRIS (First draft of the target infrastructure for the IRIS system operation). 2015.

PARÁK, Boris, David WALLOM, Slávek LICEHAMMER and Zdeněk ŠUSTR. Public-Private Cloud Federation Challenges. Online. 8th edition. Limassol: IEEE/ACM, 2015, p. 512 - 515. Available from: https://dx.doi.org/10.1109/UCC.2015.91.

NGUYEN, Filip, Tomáš REBOK, Richard LUDVIGH and Václav TUNKA. Ruby Benchmark Suite using Docker. Online. In M. Ganzha, L. Maciaszek, M. Paprzycki. Annals of Computer Science and Information Systems, Volume 5. 2015th ed. Poland: IEEE, 2015, p. 947-952. ISBN 978-83-60810-66-8. Available from: https://dx.doi.org/10.15439/2015F99.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Ivo NUTÁR and Dušan LAGO. Software pro konfiguraci a monitorování virtuálního prostředí KYPO (Software for configuration and monitoring of KYPO environment). 2015.

OŠLEJŠEK, Radek, Zdenek EICHLER, Dalibor TOTH, Pavel ČELEDA, Jakub ČEGAN, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Martin VIZVÁRY and Jan VYKOPAL. Software pro vizualizaci virtuálního prostředí KYPO (Software for visualization of KYPO environment). 2015.

JANČA, Radim, Kamil MALINKA and Vlasta ŠŤAVOVÁ. Systém pro distribuci dotazníků v počítačových učebnách (The system for questionnaire distribution in computer study rooms). 2015.

PETERLÍK, Igor and Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015. Washington, D.C. , USA: IEEE, 2015, p. 1412-1419. ISBN 978-1-4673-6798-1. Available from: https://dx.doi.org/10.1109/BIBM.2015.7359884.

KOUŘIL, Daniel, Marcel POUL and Michal PROCHÁZKA. Using PKI to Provide Credential Delegation in non Web-based Federations. In Proceedings of the International Conference on Information Science and Applications, Lecture Notes in Electrical Engineering. Pattaya, Thailand: Springer Berlin Heidelberg, 2015, p. 525-532. ISBN 978-3-662-46577-6. Available from: https://dx.doi.org/10.1007/978-3-662-46578-3_62.

SLOVÁK, Petr, Petr HOLUB and Pavel TROUBIL. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí (Videoconferencing Environment for Remote Group Collaboration and Communication Mode of Remote Groups in a Videoconferencnig System Environment). 2015.

JAVORNÍK, Michal, Otto DOSTÁL and Aleš ROČEK. Watermarking in Regional Medical Imaging. Online. In Valeri Mladenov, Elias Giacoumidis, Jinlong Wei. Proceedings of the 13th International Conference on Data Networks, Communications, Computers. Hungary: World Scientific and Engineering Academy and Society, 2015, p. 222-226. ISBN 978-1-61804-355-9.

HARAZIM, Hana, Petr ŠTOURAČ, Martina KOSINOVÁ, Olga SMÉKALOVÁ, Roman ŠTOUDEK, Daniel SCHWARZ, Vít RUSŇÁK and Miloš LIŠKA. Zapojení interaktivní výuky do pregraduálního studia akutní medicíny: virtuální pacient, pokročilé simulace a přenosy z operačních sálů (Use of interactive education in undergraduate teaching of acute medicine: the virtual and standardised patient, operating theatre broadcasting). Anesteziologie & intenzivní medicína. Praha: Česká lékařská společnost J.E. Purkyně, 2015, vol. 26, No 4, p. 202-212. ISSN 1214-2158.

PROCHÁZKA, Michal. Závěrečná zpráva STORK e-Academia pilot (STORK e-Academia pilot final report). Brno: Masarykova univerzita, 2015, 29 pp.

KOUŘIL, Daniel, Tomáš REBOK, Tomáš JIRSÍK, Jakub ČEGAN, Martin DRAŠAR, Martin VIZVÁRY and Jan VYKOPAL. Cloud-based Testbed for Simulation of Cyber Attacks. In Hanan Lutfiyya and Piotr Cholda. Proceedings of the Network Operations and Management Symposium (NOMS 2014). Krakow, Poland: IEEE Xplore Digital Library, 2014, p. 1-6. ISBN 978-1-4799-0913-1. Available from: https://dx.doi.org/10.1109/NOMS.2014.6838298.

PAZÚRIKOVÁ, Jana and Luděk MATYSKA. Convergence of Parareal Algorithm Applied on Molecular Dynamics Simulations. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. MEMICS 2014. Brno: NOVPRESS, 2014, p. 101-111. ISBN 978-80-214-5022-6.

IŠTVÁNEK, Jan, Michal JAROŠ, Aleš KŘENEK and Jana ŘEPKOVÁ. Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae). American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2014, vol. 101, No 2, p. 327-337. ISSN 0002-9122. Available from: https://dx.doi.org/10.3732/ajb.1300340.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS and Jitka SPURNÁ. GIS of Traditional Folk Culture. Online. In ESRI. 2014 Esri User Conference Paper Sessions. Neuveden: ESRI, 2014, p. nestránkováno, 15 pp.

KOZEL, Jiří, Petr KOVÁCS, Jitka SPURNÁ, Pavel BOHUMEL and Andrea KÝNOVÁ. Kompas - webový GIS Masarykovy univerzity (Kompas - web GIS of Masaryk University). 2014.

KOVÁCS, Petr and Jiří KOZEL. Kompas – webový GIS Masarykovy univerzity (Kompas – web GIS of Masaryk University). Online. In Arcdata Praha. Konference GIS Esri v ČR: Sborník příspěvků. Praha: Arcdata Praha, 2014, p. 28-30. ISBN 978-80-905316-1-1.

MAREK, Jiří, Hana RUDOVÁ and Petr HOLUB. Local Search Heuristics for Media Streams Planning with Transcoding. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, p. 167-170. ISBN 978-1-4799-5393-6. Available from: https://dx.doi.org/10.1109/NCA.2014.32.

RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: History and Development of a Winning Strategy. In Noriko Kando, Hideo Joho, Kazuaki Kishida. Proceedings of the 11th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2014, p. 127-134. ISBN 978-4-86049-065-2.

LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Math Indexer and Searcher Web Interface: Towards Fulfillment of Mathematicians' Information Needs. In Stephen M. Watt, James H. Davenport, Alan P. Sexton, Petr Sojka, Josef Urban. Intelligent Computer Mathematics CICM 2014. Proceedings of Calculemus, DML, MKM, and Systems and Projects. LNAI 8543. Zurich: Springer International Publishing Switzerland, 2014, p. 444-448. ISBN 978-3-319-08433-6. Available from: https://dx.doi.org/10.1007/978-3-319-08434-3_36.

SZALAI, Dominik, Robert ŠIŠKA, David FORMÁNEK, Jakub ADLER and Michal RŮŽIČKA. MathCanEval 1.0. 2014.

FORMÁNEK, David, Robert ŠIŠKA, Dominik SZALAI, Jakub ADLER, Michal RŮŽIČKA, Martin LÍŠKA and Petr SOJKA. MathML Canonicalizer 1.0.0. 2014.

RŮŽIČKA, Michal. Maths Information Retrieval for Digital Libraries. 2014. ISBN 978-3-319-08434-3.

TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Media Streams Planning with Uncertain Link Capacities. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, p. 197-204. ISBN 978-1-4799-5393-6. Available from: https://dx.doi.org/10.1109/NCA.2014.37.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL and Petr HOLUB. MUSE framework 1.5. 2014.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Tomáš BOUCHAL and Jaroslav KOČA. NEEMP – Tool for parameterization of empirical charge calculation method EEM. In Chemoinformatics Strasbourg Summer School 2014. 2014.

PROCHÁZKA, Michal, Slávek LICEHAMMER and Luděk MATYSKA. Perun – Modern Approach for User and Service Management. Mauritius: IIMC International Information Management Corporation Ltd, 2014, 11 pp. ISBN 978-1-905824-44-1.

KREJČÍŘ, Vlastimil. ResourceSync: Synchronizace zdrojů na internetu (ResourceSync: Synchronizing Resources on the Internet). Online. In INFORUM 2014: 20. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2014, p. nestránkováno, 8 pp. ISSN 1801-2213.

BÍL, Michal, Rostislav VODÁK, Jan KUBEČEK, Tomáš REBOK, Tomáš SVOBODA and Petr HLINĚNÝ. Vulnerability analysis methods for road networks. In European Geosciences Union General Assembly 2014 (EGU 2014). 2014.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS and David MIKSTEIN. Vývoj 3D aplikace v plné verzi (Developement of 3D full version application). Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2014.

LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. WebMIaS 1.5. 2014.

SOJKA, Petr, Michal RŮŽIČKA, Maroš KUCBEL and Martin JARMAR. Accessibility Issues in Digital Mathematical Libraries. In Proceedings of the Conference Universal Learning Design 2013. Brno: Masaryk University, 2013, p. 89-97. ISBN 978-80-210-6270-2.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ and Aleš KŘENEK. Advanced implementation of atomic charge calculation with electronegativity equalization. In SVOČ 2013 v Opavě. 2013.

SLOUP, Petr and Tomáš REBOK. Automatic reconstruction of Norway spruce tree models from LiDAR data. In ISPRS2013-SSG. 2013.

SLOUP, Petr, Tomáš REBOK and Jan HANUŠ. Automatic Tree Reconstruction from its Laser Scan [poster]. In Global Change and Resilience. 2013.

HOLUB, Petr, Ondřej VOJTÍŠEK, Dalibor VALÍK, Kristína GREPLOVÁ, Dana KNOFLÍČKOVÁ and Rudolf NENUTIL. BBMRI_CZ Index Service. 2013.

TROUBIL, Pavel, Jiří MAREK, Petr HOLUB and Miloš LIŠKA. CoUniverse 1.0. 2013.

BARTOŠEK, Miroslav, Petr KOVÁŘ and Vlastimil KREJČÍŘ. Digitální knihovna fotografií (Digital Photography Library). 2013.

KREJČÍŘ, Vlastimil, Tomáš HOFMAN, Michal RŮŽIČKA and Miroslav BARTOŠEK. DML-CZ DSpace. 2013.

BARTOŠEK, Miroslav and Jiří RÁKOSNÍK. DML-CZ: The Experience of a Medium-Sized Digital Mathematics Library. Notices of the AMS. Providence (USA): American Mathematical Society, 2013, vol. 60, No 8, p. 1028-1033. ISSN 0002-9920. Available from: https://dx.doi.org/10.1090/noti1031.

PAZÚRIKOVÁ, Jana and Luděk MATYSKA. Electrostatics' calculation parallel in time. In CECAM workshop on Fast Methods for Long Range Interactions in Complex Particle Systems. 2013.

BOUCHAL, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Crina-Maria IONESCU, Stanislav GEIDL, Aleš KŘENEK and Jaroslav KOČA. Empirical charges for chemoinformatics applications. In GCC 2013 - 9th German Conference on Chemoinformatics. 2013. Available from: https://dx.doi.org/10.1186/1758-2946-6-S1-P60.

KREJČÍŘ, Vlastimil, Dominik SZALAI, Miroslav BARTOŠEK and Lucie FABRIKOVÁ. FFdigi DSpace. 2013.

BOUCHE, Thierry, Claude GOUTORBE, Nicolas HOUILLON, Jean-Paul JORDA, Romeo ANGHELACHE, Vittorio COTI ZELATI, Vlastimil KREJČÍŘ and Petr SOJKA. Final report on external imported metadata: Deliverable 3.5 of project EuDML. 1.1 as of 30th January 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 23 pp. Deliverable D3.5.

SLOUP, Petr, Tomáš REBOK and Jan HANUŠ. Fully-automated Occlusion-insensitive Norway Spruce Tree Reconstructions from 3D Point Cloud Data [poster]. In ISPRS2013-SSG. 2013.

HOLUB, Petr, Martin ŠROM, Martin PULEC, Jiří MATELA and Martin JIRMAN. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2013, vol. 29, No 8, p. 1991-2006. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2013.06.006.

HEJTMÁNEK, Lukáš, David ANTOŠ and Luboš KOPECKÝ. Choice of Data Transfer Protocols in Remote Storage Applications. CESNET, z.s.p.o., 2013, 21 pp. CESNET Technical Report 1/2013.

MAREK, Jiří, Petr HOLUB and Hana RUDOVÁ. Local Search Heuristics for Media Streams Planning Problem. In Leonard Barolli, Fatos Xhafa, Makoto Takizawa, Tomoya Enokido, Hui-Huang Hsu. Proceedings of the 7th IEEE International Conference on Advanced Information Networking and Applications. Washington: IEEE Computer Society, 2013, p. 945-953. ISBN 978-0-7695-4953-8. Available from: https://dx.doi.org/10.1109/AINA.2013.132.

RŮŽIČKA, Michal. Masaryk University DOI Tools. 2013.

TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Media Streams Planning with Transcoding. Online. In 12th IEEE International Symposium on Network Computing and Applications (NCA 2013). USA: IEEE, 2013, p. 41-48. ISBN 978-0-7685-5043-6. Available from: https://dx.doi.org/10.1109/NCA.2013.46.

RŮŽIČKA, Michal, Petr KOVÁŘ and Vlastimil KREJČÍŘ. Metadata Editor FFdigi. 2013.

RUSŇÁK, Vít, Lukáš RUČKA, Martin ĽUPTÁK and Petr HOLUB. MUSE framework 1.1.1. 2013.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Milan LENČO, Zora STŘELCOVÁ, Aleš KŘENEK and Jaroslav KOČA. Nemesis - a molecular modeling package. Online. In Uli Fechner. Journal of Cheminformatics 2013, 5(Suppl 1). Goslar (GER): Chemistry Central, 2013, p. 13-14. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/1758-2946-5-S1-P12.

PAZÚRIKOVÁ, Jana and Luděk MATYSKA. Parallel methods for calculation of long-range electrostatic interactions. arXiv, 2013, 18 pp.

BARTOŠEK, Miroslav and Vlastimil KREJČÍŘ. Portál elektronických informačních zdrojů (Electronic information resources portal). 2013.

MATELA, Jiří, Martin JIRMAN and Petr HOLUB. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving. San Jose, CA, USA: NVIDIA Corporation, 2013. GPU Technology Conference.

LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Similarity Search for Mathematics: Masaryk University team at the NTCIR-10 Math Task. In Noriko Kando, Kazuaki Kishida. Proceedings of the 10th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2013, p. 686-691. ISBN 978-4-86049-062-1.

SOCHOR, Jan, Petr HOLUB and Ondřej VOJTÍŠEK. THALAMOSS Data Management Platform. 2013.

REBOK, Tomáš, Petr SLOUP, Jan HANUŠ and Věroslav KAPLAN. Three-dimensional Tree Reconstructions from Terrestrial LiDAR Scans. In National Grid Infrastructure Yearbook 2011-12. 2013, p. 91-95. ISBN 978-80-904689-7-9.

WOJCIECHOWSKI, Krzys, Petr SOJKA, Nicolas HOUILLON, Michal RŮŽIČKA, Radim HATLAPATKA, Vlastimil KREJČÍŘ, Miroslav HRDINA, Jiří SOCHOR, Pavel RYCHLÝ, Aleš HORÁK, Alan SEXTON, Gilberto PEDROSA, Franck LONTIN, Thierry BOUCHE and Maciej KOŁUDA. Toolset for Image and Text Processing and Metadata Enhancements — Final Release: Deliverable 7.4 of project EuDML. 1 as of 9th February 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 24 pp. Deliverable D7.4.

RŮŽIČKA, Michal, Petr SOJKA and Vlastimil KREJČÍŘ. Towards Machine-Actionable Modules of a Digital Mathematics Library: The Example of DML-CZ. In J. Carette et al. CICM 2013, LNAI 7961. Berlin / Heidelberg: Springer, 2013, p. 263-277. ISBN 978-3-642-39319-8. Available from: https://dx.doi.org/10.1007/978-3-642-39320-4_17.

RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems. In Kučera, A.; Henzinger, Th.A.; Nešetřil, J.; Vojnar, T.; Antoš, D. Lecture Notes in Computer Science Volume 7721. Revised Selected Papers. Berlin Heidelberg: Springer-Verlag Berlin / Heidelberg, 2013, p. 200-212. ISBN 978-3-642-36044-2. Available from: https://dx.doi.org/10.1007/978-3-642-36046-6_19.

KREJČÍŘ, Vlastimil. Use cases: DML-CZ vs. FFdigi. In OAI8 DSpace User Group Meeting (pre-conference to The CERN Workshop on Innovations in Scholarly Communication (OAI8)). 2013.

TÓTH, Gabriel and Petr HOLUB. VLANManager. 2013.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS, David MIKSTEIN, Jaromír LEBEDA and Jitka SPURNÁ. Vývoj 3D aplikace v základní verzi (Developement of 3D basic application). Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2013.

KOVÁCS, Petr and Jaromír LEBEDA. Zadávací aplikace GISTraLiK (Data entry appliacation GISTraLiK). 2013.

KŘENEK, Aleš, Petr HOLUB, Vlastimil HOLER, Daniel KOUŘIL, Filip PROCHÁZKA, Zdeněk HEJNA, Miroslav GURIČAN and František MULLER. 3.5 Million Smartmeters in the Cloud. Online. In Simon Lin. Proceedings ISGC 2013. Trieste: PoS - Proceedings of Science, 2013, p. 180-189. ISSN 1824-8039.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin JIRMAN, Joe MAMBRETTI, Jim CHEN, Fei YEH and Luc RENAMBOT. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE. Chicago, USA, 2012. GLIF Technical Working Group Meeting #18.

MÁCKOVÁ, Zdeňka and Miroslav BARTOŠEK. Digitální knihovna Filozofické fakulty Masarykovy univerzity (Digital Library of the Faculty of Arts of Masaryk University). Duha [online]. Brno: Moravská zemská knihovna, 2012, vol. 26, No 1. ISSN 1804-4255.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Vít RUSŇÁK, Petr HOLUB and Eric C. HOFER. Exploring collaboration in group-to-group videoconferencing. In Julie Dugdale, Cédric Masclet, Maria Antonietta Grasso, Jean François Boujut, Parina Hassanaly. From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges; Proceedings of the 10th International Conference on the Design of Cooperative Systems. London: Springer, 2012, p. 229-244, 15 pp. ISBN 978-1-4471-4092-4. Available from: https://dx.doi.org/10.1007/978-1-4471-4093-1_16.

TROUBIL, Pavel and Petr HOLUB. GColl2. 2012.

MATELA, Jiří, Petr HOLUB, Martin JIRMAN and Martin ŠROM. GPU-specific reformulations of image compression algorithms. Online. In Tescher, AG. Proceedings of Applications of Digital Image Processing XXXV. 8499th ed. BELLINGHAM, WA 98227-0010 USA: SPIE-INT SOC OPTICAL ENGINEERING, 2012, p. nestránkováno, 8 pp. ISBN 978-0-8194-9216-6. Available from: https://dx.doi.org/10.1117/12.929971.

FEIT, Josef, Lukáš HEJTMÁNEK, Michal PROCHÁZKA, Slávek LICEHAMMER and Luděk MATYSKA. Hypertext Atlases of Pathology. 2012. ISSN 0945-6317.

RUČKA, Lukáš, Vít RUSŇÁK and Petr HOLUB. Libkerat - TUIO 2.0 implementation, version 1.0. 2012.

KREMSER, Jiří, Božena KOVÁČOVÁ, Marta PAVLOVSKÁ, Lukáš HEJTMÁNEK and David ANTOŠ. Long Term Preservation of Digital Data—Background Research. 2012.

MATELA, Jiří, Martin ŠROM and Petr HOLUB. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. In Lecture Notes in Computer Science 7119. Heidelberg: Springer Berlin / Heidelberg, 2012, p. 136-145. ISBN 978-3-642-25928-9. Available from: https://dx.doi.org/10.1007/978-3-642-25929-6_13.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR and David ANTOŠ. Mathematical and Engineering Methods in Computer Science MEMICS 2011, Seventh International Doctoral Workshop, Revised Selected Papers. Springer-Verlag, 2012, 215 pp. ISBN 978-3-642-25928-9. Available from: https://dx.doi.org/10.1007/978-3-642-25929-6.

LÍŠKA, Martin, David FORMÁNEK, Michal RŮŽIČKA and Petr SOJKA. MathML Canonicalizer. 2012.

RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE framework 1.0. 2012.

KLUSÁČEK, Dalibor, Hana RUDOVÁ and Miroslav RUDA. New Fairness and Performance Metrics for Current Grids. In Cracow Grid Workshop 2012. 2012. ISBN 978-83-61433-06-4.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA and Petr SOJKA. Normalization of Digital Mathematics Library Content. In Petr Sojka, Michael Kohlhase. DML 2012: Towards a Digital Mathematics Library. Brno: Masaryk University, 2012, p. 91-103. ISSN 1613-0073.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA and Petr SOJKA. Normalization of Digital Mathematics Library Content. In CEUR Workshop Proceedings, Volume 921. Aachen: Neuveden, 2012, p. 91-103, 12 pp. ISSN 1613-0073.

KREJČÍŘ, Vlastimil. Oktávo – digitální knihovna FF MU (Oktavo - digital library FF MU). In 5. setkání českých uživatelů systému DSpace. 2012.

KABÁT, Milan and Petr HOLUB. Parallelized LDGM Coding for Demanding Multimedia Applications. In Antonin Kucera, Thomas A. Henzinger, Jaroslav Nesetril, Tomas Vojnar, David Antos. Memics 2012, Eighth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. First edition. Brno: Novpress s.r.o., 2012, p. 28-37. ISBN 978-80-87342-15-2.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK and Miroslav RUDA. Planning, Predictability and Optimization within the TORQUE Scheduler. In Antonín Kučera, Thomas Henzinger, Jaroslav Nešetřil, Tomáš Vojnar, David Antoš. MEMICS 2012. první. Brno: Novpress s.r.o., 2012, p. 96-97. ISBN 978-80-87342-15-2.

TÓTH, Šimon and Miroslav RUDA. Practical Experiences with Torque Meta-Scheduling in The Czech National Grid. Krakow, Poland: AGH University of Science and Technology Press, 2012, p. 33-45. ISSN 1508-2806.

HOLUB, Petr, Kamila GREPLOVÁ, Dana KNOFLÍČKOVÁ and Dalibor VALÍK. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance. Klinická onkologie. Praha: Česká lékařská společnost J.E.Purkyně, 2012, vol. 2012, No 2, p. 2S78- 2S81, 4 pp. ISSN 0862-495X.

KLUSÁČEK, Dalibor, Václav CHLUMSKÝ and Miroslav RUDA. THE EXTENSION OF TORQUE SCHEDULER ALLOWING THE USE OF PLANNING AND OPTIMIZATION IN GRIDS. Computer Science Journal. Krakow, Poland: AGH University of Science and Technology, 2012, vol. 13, No 2, p. 5-19. ISSN 1508-2806. Available from: https://dx.doi.org/10.7494/csci.2012.13.2.5.

SOJKA, Petr, Krzysztof WOJCIECHOWSKI, Nicolas HOUILLON, Michal RŮŽIČKA and Radim HATLAPATKA. Toolset for Image and Text Processing and Metadata Enhancements — Value release: Deliverable 7.3 of project EuDML. 1.01 as of 8th March 2012. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2012, 32 pp. Deliverable D7.3.

HOLUB, Petr, Jiří MATELA, Martin PULEC and Martin ŠROM. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware. In Proceedings of the 20th ACM international conference on Multimedia. New York, NY, USA: ACM, 2012, p. 1457-1460. ISBN 978-1-4503-1089-5. Available from: https://dx.doi.org/10.1145/2393347.2396519.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin ŠROM and Martin JIRMAN. UltraGrid 1.1. 2012.

HŘEBÍČEK, Jiří, Miroslav KUBÁSEK, Lukáš KOHÚT, Luděk MATYSKA, Lucia TOKÁROVÁ and Jaroslav URBÁNEK. Vědecké výpočty v matematické biologii (Scientific computing in mathematical biology). Brno: Akademické nakladatelství CERM, 2012, 117 pp. ISBN 978-80-7204-781-9.

KUČERA, Antonín, Thomas A. HENZINGER, Jaroslav NEŠETŘIL, Tomáš VOJNAR and David ANTOŠ. 8th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2012. ISBN 978-80-87342-15-2.

SOJKA, Petr, Martin LÍŠKA and Michal RŮŽIČKA. Building Corpora of Technical Texts : Approaches and Tools. In Aleš Horák, Pavel Rychlý. Fifth Workshop on Recent Advances in Slavonic Natural Languages Processing, RASLAN 2011. první. Brno: Tribun EU, 2011, p. 71--82, 11 pp. ISBN 978-80-263-0077-9.

MATYSKA, Luděk and David ANTOŠ. Centrum CERIT-SC po roce příprav. ÚVT MU, 2011, 3 pp. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KREJČÍŘ, Vlastimil. Co je (staro)nového v DSpace (What is new in DSpace). In 4. setkání českých uživatelů systému DSpace. 2011.

GOLEMBIOVSKÝ, Tomáš and Aleš KŘENEK. Compression of Vector Field Changing in Time. Online. In Ludek Matyska, Michal Kozubek, Tomas Vojnar and Pavel Zemcik, David Antos. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Dagstuhl: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, p. 40-46. ISBN 978-3-939897-22-4.

BARTOŠEK, Miroslav. Česká digitální matematická knihovna a projekt EuDML (Czech digital mathematics library and the EuDML project). In 6. Česko-slovenské soustředění matematické olympiády a Setkání českých a slovenských matematiků. 2011.

HOLUB, Petr, Hana RUDOVÁ and Miloš LIŠKA. Data Transfer Planning with Tree Placement for Collaborative Environments. Constraints. Springer, 2011, vol. 16, No 3, p. 283-316. ISSN 1383-7133. Available from: https://dx.doi.org/10.1007/s10601-011-9106-7.

BARTOŠEK, Miroslav. DML-CZ: česká digitální matematická knihovna v roce 2011 (DML-CZ: The Czech Digital Mathematics Library in 2011). ProInflow. Brno: Masarykova univerzita, 2011, vol. 3, listopad, p. 5-12. ISSN 1804-2406.

MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. In Storer, James A. and Marcellin, Michael W. Data Compression Conference (DCC), 2011. Washington, DC, USA: IEEE Computer Society, 2011, p. 423-432. ISBN 978-0-7695-4352-9. Available from: https://dx.doi.org/10.1109/DCC.2011.49.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Petr HOLUB and Eric HOFER. Exploring Trust in Group-to-Group Video-Conferencing. Online. In CHI EA '11 Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM New York, NY, USA, 2011, p. 1459-1464. ISBN 978-1-4503-0268-5. Available from: https://dx.doi.org/10.1145/1979742.1979791.

MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, p. 77--84. ISBN 978-3-939897-22-4.

ANTOŠ, David, Petr HOLUB and Ivana KŘENKOVÁ. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU. ÚVT MU, 2011, 5 pp. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR and David ANTOŠ. MEMICS 2011, Seventh Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno University of Technology, Antonínská 548/1, Brno 601 90, 2011, 146 pp. ISBN 978-80-214-4305-1.

MATELA, Jiří, Martin PULEC and Petr HOLUB. multiOUT. 2011.

RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE framework 0.1. 2011.

RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE: Multi-Sensor Framework. 2011.

BARTOŠEK, Miroslav, Michal BRANDEJS and Ivana ČERNÁ. Otevřený přístup k vědeckým informacím na Masarykově univerzitě (Open Access to Scientific Information at Masaryk University). ITlib. Informačné technológie a knižnice. Bratislava: Centrum VTI SR, 2011, vol. 2011, No 2, p. 34-35. ISSN 1335-793X.

MATYSKA, Luděk, Miroslav RUDA and Šimon TÓTH. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure. In Simon C.Lin, Eric Yen. Data Driven e-Science. Academia Sinica Grid Computing Centre, 2011, p. 105-118. ISBN 978-1-4419-8014-4.

RŮŽIČKA, Michal. Použití Subversion pro verzování TeXových dokumentů (Version Control of TeX Documents Using Subversion). Zpravodaj CSTUG. Brno: CSTUG, 2011, vol. 2011, No 1, p. 21–64. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2011-1/21.

RŮŽIČKA, Michal and Petr SOJKA. Redakční systém odborného časopisu s podporou exportu do digitální knihovny (A Scientific Journal Processing System with the Capability of Exporting to a Digital Library). Zpravodaj CSTUG. Brno: CSTUG, 2011, vol. 2011, No 1, p. 4–20. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2011-1/4.

RŮŽIČKA, Michal and Petr SOJKA. Scientific Journal Processing System with the Capability of Exporting to a Digital Library using MathML. 2011.

RŮŽIČKA, Jan, Miroslav VOZŇÁK, Petr HOLUB, Jiří MATELA, Michal KRSEK, Jiří NAVRÁTIL, Lukáš MACURA, Miloš LIŠKA and Filip ŘEZÁČ. Seminář multimédií (Multimedia workshop). 2011.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK and David ANTOŠ. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011. ISBN 978-3-939897-22-4.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK and Miroslav RUDA. The Extension of TORQUE Scheduler Allowing the Use of Planning and Optimization Algorithms in Grids. In Cracow Grid Workshop. 2011.

TÓTH, Šimon, Miroslav RUDA and Luděk MATYSKA. Towards Peer-to-Peer Scheduling Architecture for the Czech National Grid. Krakow, Poland: Academic Computer Centre CYFRONET AGH, 2011, p. 92-101. ISBN 978-83-61433-03-3.

PULEC, Martin, Jiří MATELA and Petr HOLUB. UltraGrid Streaming to SAGE. 2011.

PULEC, Martin, Martin ŠROM, Petr HOLUB and Jiří MATELA. UltraGrid 0.9. 2011.

PULEC, Martin, Petr HOLUB, Jiří MATELA, Martin ŠROM and Martin JIRMAN. UltraGrid 1.0. 2011.

BALÁKOVÁ, Lenka, Petr ŠTOURAČ, Ivo KŘIKAVA, Pavel ŠEVČÍK, Daniel SCHWARZ, Ivo ŠNÁBL, Radim ŠUSTR and Petr HOLUB. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny (Use of e-learning AKUTNE.CZ portal to study medicine). In Petr Sojka, Martin Kvizda. Sborník SCO 2011. 1st ed. Brno: MUNI Press, 2011, p. 165-169. ISBN 978-80-210-5528-5.

LÍŠKA, Martin, Petr SOJKA, Michal RŮŽIČKA and Peter MRAVEC. Web Interface and Collection for Mathematical Retrieval : WebMIaS and MREC. In Petr Sojka, Thierry Bouche. DML 2011: Towards a Digital Mathematics Library. Brno: Masaryk University, 2011, p. 77-84. ISBN 978-80-210-5542-1.

KMUNÍČEK, Jan, Daniel KOUŘIL, Luděk MATYSKA, Zora STŘELCOVÁ, Petr KULHÁNEK, Jaroslav KOČA and Eric YEN. Catch-All Virtual Organizations - Solution for Heterogeneous and Disperse Grid Users Communities. In Lin, S. C.; Yen, E. Managed Grids and Cloud Systems in the Asia-Pacific Research Community. New York: Springer, 2010, p. 299-309. ISBN 978-1-4419-6468-7. Available from: https://dx.doi.org/10.1007/978-1-4419-6469-4_22.

HOLUB, Petr, Miloš LIŠKA, Hana RUDOVÁ and Pavel TROUBIL. Comparison of CP and IP Techniques for Data Transfer Planning. In Proceedings of the Eleventh AI*IA Symposium on Artificial Intelligence. 2010. ISBN 978-88-904924-1-9.

GOLEMBIOVSKÝ, Tomáš and Aleš KŘENEK. Compression of Vector Field Changing in Time. In MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, s.r.o., 2010, p. 76-83. ISBN 978-80-87342-10-7.

LIŠKA, Miloš, Petr HOLUB, Andrew LAKE and John VOLLBRECHT. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks. 2010 Ninth International Conference on Networks, 2010, p. 300-305. ISBN 978-0-7695-3979-9.

WELSHONS, Kenny, Patrick DORN, Andrei HUTANU, Petr HOLUB, John VOLLBRECHT and Gabrielle ALLEN. Design and Implementation of a Production Dynamically Configurable Testbed. In TG '10 Proceedings of the 2010 TeraGrid Conference. Pittsburgh, PA, USA: ACM New York, NY, USA, 2010, p. 1-8. ISBN 978-1-60558-818-6.

TROUBIL, Pavel and Petr HOLUB. Eye-Control of Videoconferencing Environment Using Common Web-Cameras. In Proceedings of the IADIS International Conferences Collaborative Technologies 2010 and Web Based Communities 2010. Freiburg: IADIS Press, 2010, p. 153-156. ISBN 978-972-8939-21-2.

SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl: enhancing trust in flexible group-to-group videoconferencing. In Proceedings of the 28th of the international conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM, 2010, p. 3607-3612. ISBN 978-1-60558-930-5.

MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In MEMICS 2010 Proceedings. first. Brno: NOVPRESS, 2010, p. 126-134. ISBN 978-80-87342-10-7.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Zdeněk KŘÍŽ, Jan KMUNÍČEK, Jaroslav KOČA and Luděk MATYSKA. grid-CICADA: Efficient Explorer of Conformational Space of Biomolecular Systems. In 5th EGEE User Forum. 2010.

PETERLÍK, Igor, Luděk MATYSKA and Jiří FILIPOVIČ. Haptic Interaction with Complex Models Based on Precomputations. Online. In Advances in Haptics. Vukovar (Croatia): IN-TECH, 2010, p. 333-356. ISBN 978-953-307-093-3.

HOLUB, Petr. H.323 for Medical Application and Virtual Laboratories. In 3rd E2EWorkshop on Provisioning E2E Services. 2010.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK and David ANTOŠ. MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS s.r.o., 2010, 213 pp. ISBN 978-80-87342-10-7.

KŘENKOVÁ, Ivana, David ANTOŠ and Luděk MATYSKA. MetaCentrum Yearbook 2009. first. Prague: CESNET, z. s. p. o., 2010, 172 pp. ISBN 978-80-904173-7-3.

KMUNÍČEK, Jan, Martin KUBA, Ivana KŘENKOVÁ and David ANTOŠ. MetaCentrum—e-Infrastructure for Computational and Data Challenges. Nové Hrady, 2010.

BARTOŠEK, Miroslav, Petr KOVÁŘ and Michal RŮŽIČKA. Metadata Editor EuDML. 2010.

HOLUB, Petr. Network-Based Collaborative Environments. In Informatics Colloquium FI MU. 2010.

KREJČÍŘ, Vlastimil and Ľuboš KOHÚT. Programování v systému DSpace (API, Manakin/XMLUI) (Developing in DSpace system (API, Manakin/XMLUI)). 2010.

ANTOŠ, David, Martin OSOVSKÝ, Marek SAITL and Václav LORENC. Ráno Eduroamisto, večer takisto. 2010, 6 pp. Zpravodaj ÚVT MU, roč. XXI, č. 2. ISSN 1212-0901.

COLLING, David, Janusz MARTYNIAK, Andrew MCGOUGH, Aleš KŘENEK, Jiří SITERA, Miloš MULAČ and František DVOŘÁK. Real Time Monitor of Grid job executions. Journal of Physics: Conference Series. 2010, vol. 219, No 6, 9 pp. ISSN 1742-6596.

PETERLÍK, Igor, Mert SEDEF, Cagatay BASDOGAN and Luděk MATYSKA. Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Computers & Graphics. Elsevier, 2010, vol. 34, No 1, p. 43-54. ISSN 0097-8493.

BOUCHE, Thierry, Hugo MANGUINHAS, Claude GOUTORBE, Nicolas HOUILLON, Rosa DE LA VIESCA, Helena FERNANDEZ, Jean-Paul JORDA, Marie-Louise CHAIX, Katarzyna ZAMLYNSKA, Wojtek SYLWESTRZAK, Michael JOST, Radoslav PAVLOV, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Petr SOJKA, Ioannis KARYDIS and Thomas FISCHER. Report on available collections and metadata: Deliverable 3.1 of project EuDML. 1.6 as of 5th August 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 40 pp. Deliverable D3.1.

KREJČÍŘ, Vlastimil. Shibboleth v systému DSpace (Shibboleth in DSpace System). In Shibboleth v praxi. 2010.

ŠUSTR, Zdeněk, Jiří SITERA, František DVOŘÁK, Jiří FILIPOVIČ, Daniel KOUŘIL, Aleš KŘENEK, Luděk MATYSKA, Miloš MULAČ, Jan POSPÍŠIL, Miroslav RUDA, Zdeněk SALVET and Michal VOCŮ. Something you may have wanted to know about L&B. Journal of Physics: Conference Series. 2010, vol. 219, No 6, 10 pp. ISSN 1742-6596.

SAMEC, Martin, Jaromír LEBEDA and Petr KOVÁCS. Technologický pasport MU (Technology documentation system). 2010.

HRBATÝ, Dušan, Jakub MAREČEK, Michal VÁVRA, Tomáš REBOK, Eva HLADKÁ, Jan DOLEČEK, Martin JANTOŠOVIČ, František KOBZÍK, Michal KOHUT, Vít RUSŇÁK, Martin SKALA, Daniel STIBOR and Jiří ŠKROBÁK. Testy softwarových VoIP klientů (Evaluation of Software VoIP clients). Brno: Laboratoř pokročilých síťových technologií FI MU, 2010.

JOST, Michael, Thierry BOUCHE, Claude GOUTORBE, Jean-Paul JORDA, Miroslav BARTOŠEK, Peter STANCHEV and Michał POLITOWSKI. The EuDML metadata schema: Deliverable D3.2 of project EuDML. 1.6 as of 15th December 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 31 pp. Deliverable D3.2.

HOLUB, Petr. Unassisted Lecture Recording at Masaryk University. In 3rd TF-Media task force meeting. 2010.

PROCHÁZKA, Michal, Daniel KOUŘIL and Luděk MATYSKA. User Centric Authentication for Web Applications. In Proceedings of the 2010 International Symposium on Collaborative Technologies and Systems. Chicago, USA: IEEE, 2010, p. 67-74. ISBN 978-1-4244-6620-7.

RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK and Petr HOLUB. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI. In Cracow Grid Workshop '09. Krakow: Academic Computer Centre CYFRONET AGH, 2010, p. 64-71. ISBN 978-83-61433-01-9.

HOLUB, Petr and Eva HLADKÁ. Virtual Multicast. In Trends in Telecommunications Technologies. 1st ed. Vukovar, Croatia: IN-TECH, 2010, p. 63-85. ISBN 978-953-307-072-8.

LIŠKA, Miloš and Petr HOLUB. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In The Eighth International Conference on Networks ICN 2009. Cancún, Mexico: IARIA, 2009, p. 259-265. ISBN 978-0-7695-3552-4.

SOJKA, Petr, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Martin LHOTÁK and Jiří VESELÝ. Czech Digital Mathematics Library -- DML-CZ. 2009.

RÁKOSNÍK, Jiří, Martin LHOTÁK, Miroslav BARTOŠEK, Petr SOJKA and Oldřich ULRYCH. Česká digitální matematická knihovna - DML-CZ (Czech Digital Mathematics Library - DML-CZ). 2009.

REBOK, Tomáš. DiProNN: Distributed Programmable Network Node. Brno: Faculty of Informatics, Masaryk University, 2009, 200 pp. Ph.D. Thesis.

HEJTMÁNEK, Lukáš and Josef FEIT. Distribuované zpracování obrazu pro virtuální mikroskop (Distributed Workflow for Virtual Microscope). Brno: Masarykova univerzita, 2009. Mefanet 2009. ISBN 978-80-7392-118-7.

HOLUB, Petr and David ANTOŠ. e-Infrastruktury - komplexní nástroje pro podporu vědy, výzkumu i výuky (e-Infrastructures--tools for science and education support). Masarykova univerzita, 2009, 7 pp. Zpravodaj ÚVT MU, 19, 4, 1-6. ISSN 1212-0901.

PÚDELKA, Ivan and Tomáš REBOK. Enhanced UDP Packet Reflector -- Erum. 2009.

SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl : A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Human-Computer Interaction – INTERACT 2009, Lecture Notes in Computer Science Volume 5727. 2009th ed. Uppsala, Sweden: Springer Berlin / Heidelberg, 2009, p. 165-168. ISBN 978-3-642-03657-6. Available from: https://dx.doi.org/10.1007/978-3-642-03658-3_22.

TROUBIL, Pavel, Petr SLOVÁK, Milan KABÁT and Petr HOLUB. GColl - group-to-group videoconferencing environment. 2009.

SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2009. ISBN 978-80-87342-04-6.

SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl Group-to-group Videoconferencing System: Design and First Experiences. In The 5th International ICST Conference on Collaborative Computing: Networking, Applications and Worksharing. Neuveden: Neuveden, 2009, 9 pp. ISBN 978-963-9799-76-9.

STŘELCOVÁ, Zora, Petr KULHÁNEK, Jan KMUNÍČEK, Jaroslav KOČA and Luděk MATYSKA. Implementation and Testing of Multiple Walkers Approach Based Free Energy Calculations in the Grid Environment. In GCCP Proceedings. Bratislava, Slovakia: Institute of Informatics SAS, 2009, p. 29-36, 7 pp. ISBN 978-80-970145-1-3.

HOLUB, Petr, Miloš LIŠKA, Andrew LAKE, Chris TRACY, Tom LEHMAN, John VOLLBRECHT and Brian CASHMAN. Interfacing CoUniverse & Internet2 DCN. In Internet2 Spring Member Meeting 2009. 2009.

HOLUB, Petr, Miloš LIŠKA, Andrew LAKE and John VOLLBRECHT. Interfacing CoUniverse & Internet2 DCN. In Internet2 Joint Tech Meeting 2009. 2009.

PROCHÁZKA, Michal, Petr HOLUB and Eva HLADKÁ. jSon: Network of Active Elements with Peer-to-Peer Control Plane. In The Eighth International Conference on Networks ICN 2009. Cancun, Mexico: IARIA, 2009, 8 pp. ISBN 978-0-7695-3552-4.

KREJČÍŘ, Vlastimil. Konfigurace OAI-PMH v DSpace (OAI-PMH configuration in DSpace system). In 2. setkání českých uživatelů systému DSpace. 2009.

STŘELCOVÁ, Zora, Petr KULHÁNEK, Jan KMUNÍČEK, Jaroslav KOČA and Luděk MATYSKA. Large-Scale Free Energy Calculations as Showcase of Worldwide Grid Usability. In 4th EGEE User Forum/OGF 25 and OGF Europe's 2nd International Event. 2009.

VOJNAR, Tomáš, Petr HLINĚNÝ, Václav MATYÁŠ and David ANTOŠ. MEMICS 2009, Fifth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. first. Brno: NOVPRESS s.r.o., nám. Republiky 725/15, 614 00 Brno, 2009, 258 pp. ISBN 978-80-87342-04-6.

ANTOŠ, David, Jiří SITERA, Luděk MATYSKA and Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. Cracow, Poland: Cyfronet AGH, Kraków, Poland, 2009, p. 86-93. ISBN 978-83-61433-00-2.

ŠUSTR, Zdeněk, Jiří SITERA, Miloš MULAČ, Miroslav RUDA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB, Zdeněk SALVET and Luděk MATYSKA. MetaCentrum, the Czech Virtualized NGI. 2009.

BARTOŠEK, Miroslav, Petr KOVÁŘ and Martin ŠÁRFY. Metadatový editor (Metadata Editor). 2009.

FILIPOVIČ, Jiří, Igor PETERLÍK and Luděk MATYSKA. On-Line Precomputation Algorithm for Real-Time Haptic Interaction with Non-Linear Deformable Bodies. In Third Joint EuroHaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems. Salt Lake City, Utah, USA: The Institute of Electrical and Electronics Engineers, 2009, p. 24 - 29. ISBN 978-1-4244-3858-7.

BARTOŠEK, Miroslav, Vlastimil KREJČÍŘ and Martin ŠÁRFY. Prezentační systém digitální knihovny DML-CZ (Digital Library Presentation System DML-CZ). 2009.

ČEŠKA, Milan, Zdeněk KOTÁSEK, Mojmír KŘETÍNSKÝ, Luděk MATYSKA and Tomáš VOJNAR. Proceedings of the International Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2008) - selected papers. Electronic Notes in Theoretical Computer Science. Amsterdam, The Netherlands: Elsevier B.V., 2009, vol. 251, 96 pp. ISSN 1571-0661.

REBOK, Tomáš, Martin BENEŠ and Milan KABÁT. Robust Audio Tool (RAT) Supporting Separate Recording and Playback Audio Devices Selection. 2009.

ANTOŠ, David, Lukáš HEJTMÁNEK, Jiří CHUDOBA, Daniel KOUŘIL, Luděk MATYSKA and Michal PROCHÁZKA. Správa dat v gridových systémech (Data Management in Grid Systems). In Proceedings of the Annual Database Conference DATAKON 2009. 1st ed. Praha: Oeconomica, Praha, 2009, p. 251-265. ISBN 978-80-245-1568-7.

LIŠKA, Miloš, Jiří MATELA and Lukáš HEJTMÁNEK. UltraGrid2K. 2009.

HOLUB, Petr, Miloš LIŠKA, Jiří MATELA, Martin BENEŠ and Ian N. WESLEY-SMITH. UltraGrid-20090105. 2009.

ANTOŠ, David, Luděk MATYSKA, Petr HOLUB and Jiří SITERA. VirtCloud: Virtual Network for User-controlled Virtual Clusters. 2009.

ANTOŠ, David, Luděk MATYSKA, Petr HOLUB and Jiří SITERA. VirtCloud: Virtualising Network for Grid Environments--First Experiences. In The 23rd IEEE International Conference on Advanced Information Networking and Applications AINA 2009. Bradford, UK: IEEE Comp. Soc., 2009, p. 876-883. ISBN 978-1-4244-4000-9.

RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB and Miloš MULAČ. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI; CESNET technical report 17/2009. 2009.

ANTOŠ, David. Virtualizace v gridových infrastrukturách. 2009.

SITERA, Jiří and David ANTOŠ. Virtuální grid: virtualizace krátí cestu do MetaCentra (Virtual Grid). Brno: CPress Media, a. s., 2009, 2 pp. Connect! 7-8/2009, roč. XIV. ISSN 1211-3085.

VOJTĚCH, Josef, Miloslav HŮLA, Jan RADIL, Miroslav KARÁSEK, Stanislav ŠÍMA, Jan NEJMAN and Petr HOLUB. Zařízení pro skupinové vysílání optických signálů v Internetu a jiných sítích (Device for group multicasting of optical signals in Internet and other networks). 2009.

PROCHÁZKA, Michal, Daniel KOUŘIL, Luděk MATYSKA, Tomáš KUBINA and Lukáš SPURNÝ. A Federated Framework for Secure Collaborative Systems. In EUNIS 2008 VISION IT, Visions for IT in Higher Education. Aarhus, Denmark: University of Aarhus, 2008, 9 pp. ISBN 978-87-91234-56-9.

KLUSÁČEK, Dalibor, Hana RUDOVÁ and Luděk MATYSKA. Alea - Grid Scheduling Simulation Environment. 2008.

KLUSÁČEK, Dalibor, Luděk MATYSKA and Hana RUDOVÁ. Alea - Grid Scheduling Simulation Environment. In Parallel Processing and Applied Mathematics. Heidelberg, Germany: Springer-Verlag, Lecture Notes in Computer Science 4967, 2008, p. 1029-1038. ISBN 978-3-540-68105-2.

KREJČÍŘ, Vlastimil. Building the Czech Digital Mathematics Library upon DSpace System. In Petr Sojka. DML 2008 : Towards Digital Mathematics Library. Brno: Masaryk University, 2008, p. 117-126, 9 pp. ISBN 978-80-210-4658-0.

HOLUB, Petr and Miloš LIŠKA. CoUniverse. 2008.

LIŠKA, Miloš and Petr HOLUB. CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In Lecture Notes in Computer Science vol. 5415 Euro-Par 2008 Workshops - Parallel Processing. Las Palmas de Gran Canaria, Spain: Springer Berlin / Heidelberg, 2008, p. 339-351, 12 pp. ISBN 978-3-642-00954-9.

BARTOŠEK, Miroslav. Česká digitální matematická knihovna (Czech digital mathematics library). In INFORUM 2008: 14. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2008, 11 pp. ISSN 1801-2213.

REBOK, Tomáš and Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. In Networking Studies II : Selected Technical Reports. Praha: CESNET z.s.p.o., 2008, p. 147-169. ISBN 978-80-254-2151-2.

BARTOŠEK, Miroslav, Petr KOVÁŘ and Martin ŠÁRFY. DML-CZ Metadata Editor. In Towards Digital Mathematics Library. Brno: Masaryk University, 2008, p. 139-151. ISBN 978-80-210-4658-0.

BARTOŠEK, Miroslav, Martin LHOTÁK, Jiří RÁKOSNÍK, Petr SOJKA and Martin ŠÁRFY. DML-CZ: The Objectives and the First Steps. In Communicating Mathematics in the Digital Era. London: A.K. Peters Ltd., Transatlantic Publishers Group, 2008, p. 75-86, 11 pp. Sv. 1. ISBN 9781568814100.

KREJČÍŘ, Vlastimil. DML-CZ v systému DSpace (DML-CZ in DSpace System). In 1. setkání českých uživatelů systému DSpace. 2008.

ANTOŠ, David, Jiří DENEMARK and Jan FOUSEK. Effects of Virtualisation on Behaviour and Performance Characteristics of Network Processing. 2008.

HOLUB, Petr, Michael ANGASTINIOTIS, Christos SHAMMAS, John OLD, Fotis GEORGATOS and Carsten LEDERER. Evaluation of the Introduction of the Use of e-Infrastructure Tools in the Research of Thalassaemia and Other Haemoglobinopathies. In 2nd Ithanet Scientific Workshop, Singapore 2008. 2008.

SCHOVANCOVÁ, Jaroslava, Jiří CHUDOBA, František DVOŘÁK, Jiří FILIPOVIČ, Jan KMUNÍČEK, Aleš KŘENEK, Luděk MATYSKA, Miloš MILAČ, Miroslav RUDA, Zdeněk SALVET, Jiří SITERA, Zdeněk ŠUSTR and Petr TRÁVNÍČEK. Experience with Large Scale Simulations on the EGEE Grid for the AUGER collaboration. In Proceedings of the Third Conference of the EELA Project. Catania, Itálie: CIEMAT, 2008, p. 283-291, 8 pp. ISBN 978-84-7834-565-6.

KŘENEK, Aleš, Jiří SITERA, Jiří CHUDOBA, František DVOŘÁK, Jiří FILIPOVIČ, Jan KMUNÍČEK, Luděk MATYSKA, Miloš MULAČ, Miroslav RUDA, Zdeněk ŠUSTR, Simone CAMPANA, Elizabetta MOLINARI and David REBATTO. Experimental evaluation of job provenance in ATLAS environment. In Journal of Physics: Conference Series. Bristol, Great Britain, 2008, p. 1-9.

KŘENEK, Aleš, Jiri SITERA, Luděk MATYSKA, Frantisek DVORAK, Miloš MULAČ, Miroslav RUDA and Zdeněk SALVET. gLite Job Provenance - a job-centric view. Concurrency and Computation: Practice and Experience. John Wiley & Sons, Inc, 2008, vol. 20, No 5, p. 453-462. ISSN 1532-0626. Available from: https://dx.doi.org/10.1002/cpe.1252.

PETERLÍK, Igor and Luděk MATYSKA. Haptic Interaction with Soft Tissues Based on State-Space Approximation. In LNCS Haptics: Perception, Devices and Scenarios. Berlin / Heidelberg: Springer, 2008, p. 886-895. ISBN 978-3-540-69056-6.

MATYSKA, Luděk, Eva HLADKÁ, Petr HOLUB and Miloš LIŠKA. High Quality Large Scale Virtual Classroom. In Proceedings of the 14th International Conference of European University Information Systems (EUNIS 2008). Århus, Denmark: Aarhus University, 2008, 4 pp. ISBN 978-87-91234-58-3.

KMUNÍČEK, Jan, Martin KUBA, Vítězslav PLŠEK and Luděk MATYSKA. Charon GUI: Feature Rich Interface to Distinct Grid Niches. In 3rd EGEE User Forum, Clermont-Ferrand, France. 2008.

WESLEY-SMITH, Ian N., Miloš LIŠKA and Petr HOLUB. Implementation of DXT Compression for UltraGrid. CESNET, 2008. Technical report 4/2008.

KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Integrovaná správa pověření pro e-learningové systémy. In SCO 2008. Brno: Masarykova univerzita, 2008, p. 117-122. ISBN 9788021046139.

ANTOŠ, David, Jiří SITERA and Daniel KOUŘIL. IPv6 in METACenter. 2008.

RUDA, Miroslav, Jiri SITERA, Aleš KŘENEK, Luděk MATYSKA, Zdenek SUSTR and Michal VOCŮ. Job Centric Monitoring on the Grid 7 years of experience with L&B and JP services. In CESNET CONFERENCE 2008-SECURITY, MIDDLEWARE, AND VIRTUALIZATION-GLUE OF FUTURE NETWORKS. Praha: CESNET, 2008, p. 3-12. ISBN 978-80-904173-0-4.

KŘENEK, Aleš, Luděk MATYSKA, Jiří SITERA, Miroslav RUDA, František DVOŘÁK, Jiří FILIPOVIČ, Zdeněk ŠUSTR and Zdeněk SALVET. Job Provenance - Insight into Very Large Provenance Datasets. In Provenance and Annotation of Data and Processes. Second International Provenance and Annotation Workshop, IPAW 2008; LNCS. Berlin: Springer Berlin / Heidelberg, 2008, p. 144-151. ISBN 978-3-540-89964-8.

ČEŠKA, Milan, Zdeněk KOTÁSEK, Mojmír KŘETÍNSKÝ, Luděk MATYSKA, Tomáš VOJNAR and David ANTOŠ. MEMICS 2008, Fourth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2008.

ČEŠKA, Milan, Zdeněk KOTÁSEK, Mojmír KŘETÍNSKÝ, Luděk MATYSKA, Tomáš VOJNAR and David ANTOŠ. MEMICS 2008, Fourth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 1st ed. Brno: Ing. Zdeněk Novotný CSc., Ondráčkova 105, 628 00 Brno, 2008, p. 1-286. ISBN 978-80-7355-082-0.

ANTOŠ, David, Jiří SITERA, Luděk MATYSKA and Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. 2008.

HEJTMÁNEK, Lukáš. Secure and Fault Tolerant Distributed Framework with Mobility Support. In Grid Middleware and Services - Challenges and Solutions. New York, NY, USA: Springer Science + Business Media, 2008, p. 289-304. ISBN 978-0-387-78445-8.

ANTOŠ, David. Služby ÚVT pro vědu a výzkum (ICS Services for Science and Research). Brno: Masarykova univerzita, 2008. ISSN 1212-0901.

VOCHOZKOVÁ, Hana. Souborný katalog ČR. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 2008, roč. 19, č. 2, p. 11-12. ISSN 1212-0901.